chr1 : 219,543,184 219,543,638
454 bp 55 TFs 0 linked genes
This 454 bp open chromatin element has no linked target genes and is bound by 55 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:219,538,184 – 219,548,638
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
55 transcription factors
Source
Cell type
ARID1A 2 datasets
ChIP 12Z GSE129781.ARID1A.12Z 363 bp overlap
ChIP endometrial-epithelial-cells GSE106660.ARID1A.endometrial-epithelial-cells 165 bp overlap
BRD4 9 datasets
ChIP HCC1395 GSE63581.BRD4.HCC1395 454 bp overlap
ChIP HCC1395_JQ1 GSE63581.BRD4.HCC1395_JQ1 374 bp overlap
ChIP MDA-MB-231_JQ1 GSE116879.BRD4.MDA-MB-231_JQ1 354 bp overlap
ChIP MDA-MB-231_JQ1_MGSK2801 GSE116879.BRD4.MDA-MB-231_JQ1_MGSK2801 257 bp overlap
ChIP MDA-MB-231_JQ1_MGSK2801_rDNA GSE116879.BRD4.MDA-MB-231_JQ1_MGSK2801_rDNA 257 bp overlap
ChIP MDA-MB-231_JQ1_rDNA GSE116879.BRD4.MDA-MB-231_JQ1_rDNA 354 bp overlap
ChIP MPNST_PDJQ GSE62499.BRD4.MPNST_PDJQ 202 bp overlap
ChIP SUM159PT_100nMtrametinib_72h GSE87418.BRD4.SUM159PT_100nMtrametinib_72h 183 bp overlap
ChIP SUM159PT_DMSO_8h GSE87418.BRD4.SUM159PT_DMSO_8h 246 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_neural-crest-cell GSE108506.CHD7.hiPSC_derived_neural-crest-cell 194 bp overlap
CREB1 3 datasets
ChIP MCF-7 ENCFF341ZEM 146 bp overlap
ChIP MCF-7 ENCFF867SAS 137 bp overlap
ChIP MCF-7 ENCSR897JAS.CREB1.MCF-7 98 bp overlap
CSDC2 2 datasets
ChIP SK-N-SH ENCFF868MXA 351 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR474KBG.CSDC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 284 bp overlap
DAXX 1 dataset
ChIP PC-3 GSE68647.DAXX.PC-3 336 bp overlap
DPF2 2 datasets
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.DPF2.BIN-67_lentivirus-SMARCA4-K785R 294 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.DPF2.BIN-67_lentivirus-SMARCA4-T910M 215 bp overlap
DUX4 1 dataset
ChIP WA01 GSE94322.DUX4.WA01 275 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 317 bp overlap
EP300 2 datasets
ChIP SK-N-SH ENCFF451CNG 259 bp overlap
ChIP SK-N-SH ENCSR000BUA.EP300.SK-N-SH 393 bp overlap
EPAS1 1 dataset
ChIP PC-3_hypoxia GSE106305.EPAS1.PC-3_hypoxia 107 bp overlap
FOS 4 datasets
ChIP CFPAC-1 GSE119930.FOS.CFPAC-1 54 bp overlap
ChIP CFPAC-1 GSE119930.FOS.CFPAC-1 291 bp overlap
ChIP endothelial cell of umbilical vein ENCFF415XBG 363 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EVU.FOS.endothelial_umbilical-vein 303 bp overlap
FOSL2 3 datasets
ChIP NPC_K755R-pos GSE122631.FOSL2.NPC_K755R-pos 312 bp overlap
ChIP SK-N-SH ENCFF127ZDW 226 bp overlap
ChIP SK-N-SH ENCSR000BVB.FOSL2.SK-N-SH 298 bp overlap
FOXA1 2 datasets
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 435 bp overlap
ChIP CFPAC-1_FOXA2-KO GSE119930.FOXA1.CFPAC-1_FOXA2-KO 419 bp overlap
FOXA2 5 datasets
ChIP CFPAC-1 GSE119930.FOXA2.CFPAC-1 453 bp overlap
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 407 bp overlap
ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 404 bp overlap
ChIP DE DE-FOXA2-1 411 bp overlap
ChIP DE DE-FOXA2-2 454 bp overlap
FOXL2 3 datasets
ChIP KGN_1512 GSE138496.FOXL2.KGN_1512 228 bp overlap
ChIP KGN_1513 GSE138496.FOXL2.KGN_1513 294 bp overlap
ChIP SVOG-3e_DOX-WT GSE126171.FOXL2.SVOG-3e_DOX-WT 324 bp overlap
FOXM1 2 datasets
ChIP SK-N-SH ENCFF404RGX 363 bp overlap
ChIP SK-N-SH ENCSR000BTB.FOXM1.SK-N-SH 306 bp overlap
GATA2 3 datasets
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 130 bp overlap
ChIP primary-endometrial-stromal-cell_IVD_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P2 197 bp overlap
ChIP primary-endometrial-stromal-cell_Veh_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_Veh_P2 414 bp overlap
GATA3 1 dataset
ChIP SK-N-SH ENCFF040SSB 356 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 454 bp overlap
ChIP DE DE-GATA4-2 440 bp overlap
GATA6 5 datasets
ChIP DE DE-GATA6-1 389 bp overlap
ChIP DE DE-GATA6-2 454 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 410 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 427 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 436 bp overlap
HNF4A 1 dataset
ChIP IM95 GSE114018.HNF4A.IM95 130 bp overlap
JUN 2 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 247 bp overlap
ChIP Karpas-299 GSE151413.JUN.Karpas-299 237 bp overlap
JUNB 2 datasets
ChIP CFPAC-1 GSE119930.JUNB.CFPAC-1 348 bp overlap
ChIP Karpas-299 GSE151413.JUNB.Karpas-299 113 bp overlap
JUND 3 datasets
ChIP SK-N-SH ENCFF551NEQ 118 bp overlap
ChIP SK-N-SH ENCFF971JKN 243 bp overlap
ChIP SK-N-SH ENCSR000BSK.JUND.SK-N-SH 311 bp overlap
LHX2 1 dataset
ChIP retina_pigment GSE60024.LHX2.retina_pigment 292 bp overlap
MAX 2 datasets
ChIP SK-N-SH ENCFF285LXR 117 bp overlap
ChIP SK-N-SH ENCSR000BVD.MAX.SK-N-SH 294 bp overlap
MED1 1 dataset
ChIP hMSC-TERT4_4h GSE104537.MED1.hMSC-TERT4_4h 211 bp overlap
MEF2A 1 dataset
ChIP SK-N-SH ENCSR000BVC.MEF2A.SK-N-SH 131 bp overlap
MYCN 1 dataset
ChIP MYCN-3_low GSE83317.MYCN.MYCN-3_low 143 bp overlap
NFIC 2 datasets
ChIP SK-N-SH ENCFF965AKM 244 bp overlap
ChIP SK-N-SH ENCSR000BSV.NFIC.SK-N-SH 385 bp overlap
NR3C1 1 dataset
ChIP MDA-MB-231 GSE152203.NR3C1.MDA-MB-231 208 bp overlap
PBX3 1 dataset
ChIP SK-N-SH ENCFF876BMC 220 bp overlap
POLR2A 1 dataset
ChIP SK-N-SH ENCFF683PFH 205 bp overlap
RELA 8 datasets
ChIP aortic-endothelial-cell_IL1B_D14 GSE139377.RELA.aortic-endothelial-cell_IL1B_D14 238 bp overlap
ChIP aortic-endothelial-cell_IL1B_D21 GSE139377.RELA.aortic-endothelial-cell_IL1B_D21 229 bp overlap
ChIP aortic-endothelial-cell_IL1B_D26 GSE139377.RELA.aortic-endothelial-cell_IL1B_D26 210 bp overlap
ChIP aortic-endothelial-cell_IL1B_D38 GSE139377.RELA.aortic-endothelial-cell_IL1B_D38 233 bp overlap
ChIP aortic-endothelial-cell_IL1B_D39 GSE139377.RELA.aortic-endothelial-cell_IL1B_D39 212 bp overlap
ChIP aortic-endothelial-cell_IL1B_D40 GSE139377.RELA.aortic-endothelial-cell_IL1B_D40 228 bp overlap
ChIP aortic-endothelial-cell_IL1B_D7 GSE139377.RELA.aortic-endothelial-cell_IL1B_D7 158 bp overlap
ChIP aortic-endothelial-cell_IL1B_D9 GSE139377.RELA.aortic-endothelial-cell_IL1B_D9 215 bp overlap
REST 1 dataset
ChIP SK-N-SH ENCFF635KBN 257 bp overlap
RXRA 2 datasets
ChIP SK-N-SH ENCFF893DLM 369 bp overlap
ChIP SK-N-SH ENCSR000BVG.RXRA.SK-N-SH 270 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 308 bp overlap
SMAD3 1 dataset
ChIP PC-3_hypoxia GSE106305.SMAD3.PC-3_hypoxia 271 bp overlap
SMARCA4 7 datasets
ChIP A-549_AG15677 GSE132290.SMARCA4.A-549_AG15677 101 bp overlap
ChIP A-549_AG15720 GSE132290.SMARCA4.A-549_AG15720 86 bp overlap
ChIP A-549_AG15721 GSE132290.SMARCA4.A-549_AG15721 63 bp overlap
ChIP A-549_AG15722 GSE132290.SMARCA4.A-549_AG15722 72 bp overlap
ChIP A-549_AG15725 GSE132290.SMARCA4.A-549_AG15725 216 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 289 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 454 bp overlap
SMARCC1 3 datasets
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-T910M 296 bp overlap
ChIP SYO-1_shCt GSE139053.SMARCC1.SYO-1_shCt 59 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SMARCC1.SYO-1_shRING1A-B 454 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 251 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 222 bp overlap
SS18 5 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SS18.BIN-67_lentivirus-SMARCA4 245 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SS18.BIN-67_lentivirus-SMARCA4-K785R 281 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SS18.BIN-67_lentivirus-SMARCA4-T910M 286 bp overlap
ChIP SYO-1_shCt GSE139053.SS18.SYO-1_shCt 359 bp overlap
ChIP SYO-1_shSSX GSE108025.SS18.SYO-1_shSSX 289 bp overlap
STAT3 2 datasets
ChIP MDA-MB-231 GSE152203.STAT3.MDA-MB-231 213 bp overlap
ChIP MDA-MB-231_EtOH GSE85579.STAT3.MDA-MB-231_EtOH 201 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 183 bp overlap
TAL1 1 dataset
ChIP PRIMA5 GSE33850.TAL1.PRIMA5 209 bp overlap
TCF12 1 dataset
ChIP SK-N-SH ENCFF147AHB 380 bp overlap
TCF21 1 dataset
ChIP HCASMC GSE124011.TCF21.HCASMC 412 bp overlap
TEAD4 2 datasets
ChIP SK-N-SH ENCFF754TJT 310 bp overlap
ChIP SK-N-SH ENCSR000BUQ.TEAD4.SK-N-SH 337 bp overlap
TFAP4 1 dataset
ChIP DLD-1 GSE46935.TFAP4.DLD-1 319 bp overlap
USF1 1 dataset
ChIP SK-N-SH ENCFF967PDP 311 bp overlap
YY1 3 datasets
ChIP SK-N-SH ENCFF087JSD 320 bp overlap
ChIP SK-N-SH ENCSR000BSM.YY1.SK-N-SH 182 bp overlap
ChIP SK-N-SH ENCSR000BLZ.YY1.SK-N-SH 115 bp overlap
ZBTB33 2 datasets
ChIP SK-N-SH ENCFF667JYU 381 bp overlap
ChIP SK-N-SH ENCSR000BTS.ZBTB33.SK-N-SH 122 bp overlap