chr13 : 65,292,391 65,292,860
469 bp 84 TFs 0 linked genes
This 469 bp open chromatin element has no linked target genes and is bound by 84 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:65,287,391 – 65,297,860
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
84 transcription factors
Source
Cell type
ATRX 2 datasets
ChIP metastatic-neuroblastoma_CHLA90 GSE100148.ATRX.metastatic-neuroblastoma_CHLA90 441 bp overlap
ChIP metastatic-neuroblastoma_SKNFI GSE100148.ATRX.metastatic-neuroblastoma_SKNFI 266 bp overlap
BCL6B 1 dataset
Motif DE_60h DE_60h-BCL6B_MA0731.1 17 bp overlap
BCOR 1 dataset
ChIP B-cell_GERMINAL_CENTER GSE43350.BCOR.B-cell_GERMINAL_CENTER 181 bp overlap
BRD4 9 datasets
ChIP BE2C GSE80151.BRD4.BE2C 216 bp overlap
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 305 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 190 bp overlap
ChIP SK-N-BE2-C GSE80151.BRD4.SK-N-BE2-C 216 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 469 bp overlap
ChIP SK-N-BE2-C_Resistant-veh GSE107706.BRD4.SK-N-BE2-C_Resistant-veh 56 bp overlap
ChIP SK-N-BE2-C_Resistant-veh GSE107706.BRD4.SK-N-BE2-C_Resistant-veh 281 bp overlap
ChIP cortical-interneuron_KCl-pos GSE117508.BRD4.cortical-interneuron_KCl-pos 152 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 183 bp overlap
CDK6 1 dataset
ChIP KB_IL GSE52469.CDK6.KB_IL 105 bp overlap
CHD2 3 datasets
ChIP SK-N-SH ENCFF669KMB 361 bp overlap
ChIP SK-N-SH ENCFF669KMB 238 bp overlap
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 445 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 469 bp overlap
CTCF 23 datasets
ChIP AG04449 ENCFF248MBD 181 bp overlap
ChIP AG04450 ENCFF116DJL 263 bp overlap
ChIP BE2C ENCFF757SRF 281 bp overlap
ChIP BJ ENCFF434HEC 260 bp overlap
ChIP BJ ENCSR000DQI.CTCF.BJ 189 bp overlap
ChIP IMR-90 ENCSR000EFI.CTCF.IMR-90 184 bp overlap
ChIP IMR-90_Ctrl GSE125639.CTCF.IMR-90_Ctrl 193 bp overlap
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 173 bp overlap
ChIP SK-N-SH ENCFF731NJX 234 bp overlap
ChIP SK-N-SH ENCSR541AMF.CTCF.SK-N-SH 262 bp overlap
ChIP SK-N-SH ENCSR000EIC.CTCF.SK-N-SH 124 bp overlap
ChIP SK-N-SH ENCSR000DXQ.CTCF.SK-N-SH 105 bp overlap
ChIP brain microvascular endothelial cell ENCFF526VHE 231 bp overlap
ChIP chondrocyte ENCFF134ORZ 200 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-neg 125 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-pos 136 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF038KTR 279 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF442YDO 281 bp overlap
ChIP endothelial_brain-microvascular ENCSR000DTA.CTCF.endothelial_brain-microvascular 151 bp overlap
ChIP fibroblast_LUNG ENCSR000DPM.CTCF.fibroblast_LUNG 197 bp overlap
ChIP fibroblast_SKIN_LEG ENCSR000DPG.CTCF.fibroblast_SKIN_LEG 106 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 121 bp overlap
ChIP osteocyte ENCFF929FPD 354 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 405 bp overlap
EP300 3 datasets
ChIP SK-N-SH ENCFF829RWA 377 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 334 bp overlap
ChIP SK-N-SH ENCSR000BUA.EP300.SK-N-SH 189 bp overlap
ESR1 4 datasets
Motif DE_60h DE_60h-ESR1_MA0112.4 15 bp overlap
ChIP Ishikawa ENCSR000BQR.ESR1.Ishikawa 109 bp overlap
ChIP MCF-7_E2-5min-ERalpha GSE94023.ESR1.MCF-7_E2-5min-ERalpha 147 bp overlap
ChIP MCF-7_E2-80min-ERalpha GSE94023.ESR1.MCF-7_E2-80min-ERalpha 155 bp overlap
Elf5 1 dataset
Motif DE_60h DE_60h-Elf5_MA0136.4 8 bp overlap
FOS 5 datasets
ChIP IMR-90 ENCFF179EDA 236 bp overlap
ChIP IMR-90 ENCSR124AIG.FOS.IMR-90 182 bp overlap
ChIP endothelial cell of umbilical vein ENCFF415XBG 225 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EVU.FOS.endothelial_umbilical-vein 157 bp overlap
ChIP myometrium_PT916 GSE128230.FOS.myometrium_PT916 52 bp overlap
FOSL2 5 datasets
ChIP NPC_K755R-pos GSE122631.FOSL2.NPC_K755R-pos 330 bp overlap
ChIP NPC_R1159Q GSE122631.FOSL2.NPC_R1159Q 322 bp overlap
ChIP SK-N-SH ENCFF127ZDW 198 bp overlap
ChIP SK-N-SH ENCSR000BVB.FOSL2.SK-N-SH 134 bp overlap
ChIP hESC GSE69539.FOSL2.hESC 119 bp overlap
FOXJ3 1 dataset
ChIP SK-N-SH ENCFF124KVL 440 bp overlap
GATA2 7 datasets
Motif DE_60h DE_60h-GATA2_MA0036.4 7 bp overlap
ChIP ESF GSE108408.GATA2.ESF 197 bp overlap
ChIP SH-SY5Y ENCFF485YIB 203 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 469 bp overlap
ChIP SK-N-SH ENCFF764OZD 417 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 391 bp overlap
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 324 bp overlap
GATA3 6 datasets
ChIP CLB-Ga GSE90683.GATA3.CLB-Ga 249 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 280 bp overlap
ChIP SH-SY5Y ENCFF475HYF 433 bp overlap
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 429 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 351 bp overlap
ChIP SK-N-SH ENCFF040SSB 248 bp overlap
GATA4 7 datasets
ChIP DE DE-GATA4-1 434 bp overlap
ChIP DE DE-GATA4-2 385 bp overlap
Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 341 bp overlap
ChIP foregut GSE117136.GATA4.foregut 462 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 395 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 427 bp overlap
GATA5 1 dataset
Motif DE_60h DE_60h-GATA5_MA0766.3 8 bp overlap
GATA6 15 datasets
ChIP DE DE-GATA6-1 382 bp overlap
ChIP DE DE-GATA6-2 376 bp overlap
Motif DE_60h DE_60h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 469 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 462 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 456 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 469 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 469 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 469 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 469 bp overlap
ChIP foregut GSE117136.GATA6.foregut 469 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 324 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 374 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 418 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 313 bp overlap
Gata3 1 dataset
Motif DE_60h DE_60h-Gata3_MA0037.5 8 bp overlap
HAND2 2 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 364 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 411 bp overlap
IKZF2 1 dataset
Motif DE_60h DE_60h-IKZF2_MA2326.1 6 bp overlap
ISL1 2 datasets
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 246 bp overlap
ChIP SK-N-SH ENCFF285GEQ 427 bp overlap
Irf1 1 dataset
Motif DE_60h DE_60h-Irf1_MA0050.4 11 bp overlap
JUN 4 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 264 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 356 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 469 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 340 bp overlap
JUND 5 datasets
ChIP H1 ENCFF010YXS 203 bp overlap
ChIP SK-N-SH ENCFF551NEQ 196 bp overlap
ChIP SK-N-SH ENCFF971JKN 175 bp overlap
ChIP SK-N-SH ENCSR000EIB.JUND.SK-N-SH 202 bp overlap
ChIP SK-N-SH ENCSR000BSK.JUND.SK-N-SH 153 bp overlap
KDM1A 5 datasets
ChIP K-562_Wnt GSE117944.KDM1A.K-562_Wnt 231 bp overlap
ChIP SH-SY5Y_B0 GSE58258.KDM1A.SH-SY5Y_B0 294 bp overlap
ChIP SH-SY5Y_B0_SHLSD18A GSE58258.KDM1A.SH-SY5Y_B0_SHLSD18A 207 bp overlap
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 332 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 268 bp overlap
MAFB 1 dataset
ChIP islet ERP004003.MAFB.islet 128 bp overlap
MAML3 1 dataset
ChIP SK-N-SH GSE69119.MAML3.SK-N-SH 256 bp overlap
MED26 1 dataset
ChIP HEK293T GSE121024.MED26.HEK293T 269 bp overlap
MEF2A 2 datasets
ChIP SK-N-SH ENCFF053MLP 186 bp overlap
ChIP SK-N-SH ENCSR000BVC.MEF2A.SK-N-SH 100 bp overlap
MXI1 2 datasets
ChIP SK-N-SH ENCFF746HVJ 371 bp overlap
ChIP SK-N-SH ENCSR000EIA.MXI1.SK-N-SH 423 bp overlap
MYCN 3 datasets
ChIP Kelly GSE94822.MYCN.Kelly 410 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 269 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 218 bp overlap
Mecom 1 dataset
Motif DE_60h DE_60h-Mecom_MA0029.2 11 bp overlap
NANOG 1 dataset
ChIP hESC GSE18292.NANOG.hESC 93 bp overlap
PBX3 1 dataset
ChIP SK-N-SH ENCFF876BMC 311 bp overlap
PDX1 1 dataset
ChIP hiPSC GSE125768.PDX1.hiPSC 278 bp overlap
RAD21 6 datasets
ChIP IMR-90 ENCSR000EFJ.RAD21.IMR-90 200 bp overlap
ChIP SK-N-SH ENCFF747MAS 249 bp overlap
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 381 bp overlap
ChIP neural ENCSR198ZYJ.RAD21.neural 454 bp overlap
ChIP neural cell ENCFF564MOT 437 bp overlap
ChIP neuroblastoma GSE115862.RAD21.neuroblastoma 233 bp overlap
RCOR1 2 datasets
ChIP IMR-90 ENCSR000EFG.RCOR1.IMR-90 138 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 378 bp overlap
REST 2 datasets
ChIP neural ENCSR000BTV.REST.neural 420 bp overlap
ChIP neural cell ENCFF882LXX 402 bp overlap
RFX1 3 datasets
Motif DE_60h DE_60h-RFX1_MA0509.3 16 bp overlap
ChIP MCF-7 ENCFF782EZS 309 bp overlap
ChIP MCF-7 ENCSR066TET.RFX1.MCF-7 273 bp overlap
RFX2 1 dataset
Motif DE_60h DE_60h-RFX2_MA0600.3 14 bp overlap
RFX3 1 dataset
Motif DE_60h DE_60h-RFX3_MA0798.3 16 bp overlap
RFX5 2 datasets
Motif DE_60h DE_60h-RFX5_MA0510.3 14 bp overlap
ChIP SK-N-SH ENCSR000EHY.RFX5.SK-N-SH 156 bp overlap
Rfx6 1 dataset
Motif DE_60h DE_60h-Rfx6_MA1724.2 9 bp overlap
SMAD2 1 dataset
Motif DE_60h DE_60h-SMAD2_MA1964.2 6 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 397 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 373 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 295 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 392 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 370 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 319 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 327 bp overlap
SMARCA2 2 datasets
ChIP NPC_K755R-pos GSE122631.SMARCA2.NPC_K755R-pos 105 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA2.NPC_K755R-siCT 112 bp overlap
SMARCA4 13 datasets
ChIP A-549_AG15677 GSE132290.SMARCA4.A-549_AG15677 92 bp overlap
ChIP A-549_AG15722 GSE132290.SMARCA4.A-549_AG15722 136 bp overlap
ChIP A-549_AG15725 GSE132290.SMARCA4.A-549_AG15725 87 bp overlap
ChIP NGP GSE134626.SMARCA4.NGP 308 bp overlap
ChIP NGP_ARID1A-het GSE134626.SMARCA4.NGP_ARID1A-het 347 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 404 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 188 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA4.NPC_K755R-siCT 182 bp overlap
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 290 bp overlap
ChIP TTC-1240 GSE124903.SMARCA4.TTC-1240 204 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCA4.TTC-1240_R377H 253 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCA4.TTC-1240_delC 212 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 462 bp overlap
SMARCC1 3 datasets
ChIP TTC-1240 GSE124903.SMARCC1.TTC-1240 112 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCC1.TTC-1240_R377H 224 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 160 bp overlap
SMC3 2 datasets
ChIP IMR-90 ENCSR000HPG.SMC3.IMR-90 147 bp overlap
ChIP neural ENCSR404BPV.SMC3.neural 349 bp overlap
SOX10 1 dataset
Motif DE_60h DE_60h-SOX10_MA0442.3 6 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 469 bp overlap
SS18-SSX 1 dataset
ChIP fibroblast_7aa GSE139053.SS18-SSX.fibroblast_7aa 210 bp overlap
Sox11 1 dataset
Motif DE_60h DE_60h-Sox11_MA0869.3 8 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 360 bp overlap
TBX2 1 dataset
ChIP Kelly GSE94822.TBX2.Kelly 151 bp overlap
TCF12 1 dataset
ChIP SK-N-SH ENCFF147AHB 109 bp overlap
TCF4 2 datasets
ChIP SH-SY5Y GSE96915.TCF4.SH-SY5Y 224 bp overlap
ChIP SK-N-SH ENCFF270OWF 346 bp overlap
TEAD4 3 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 171 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 171 bp overlap
ChIP SNU-216 GSE44416.TEAD4.SNU-216 174 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 177 bp overlap
TOX2 1 dataset
ChIP SK-N-SH ENCFF415OYE 297 bp overlap
TRPS1 1 dataset
Motif DE_60h DE_60h-TRPS1_MA1970.2 8 bp overlap
TSHZ2 1 dataset
ChIP SK-N-SH ENCFF182EBB 379 bp overlap
TWIST1 2 datasets
ChIP SHEP-21N GSE80151.TWIST1.SHEP-21N 211 bp overlap
ChIP SHEP-21N_24h GSE80151.TWIST1.SHEP-21N_24h 151 bp overlap
ZBTB24 1 dataset
Motif DE_60h DE_60h-ZBTB24_MA2330.1 10 bp overlap
ZNF528 1 dataset
Motif DE_60h DE_60h-ZNF528_MA1597.1 17 bp overlap
ZNF582 1 dataset
Motif DE_60h DE_60h-ZNF582_MA1983.2 19 bp overlap
ZNF85 1 dataset
Motif DE_60h DE_60h-ZNF85_MA1720.2 12 bp overlap
Zfp809 1 dataset
Motif DE_60h DE_60h-Zfp809_MA2125.1 9 bp overlap
Zic2 1 dataset
Motif DE_60h DE_60h-Zic2_MA1629.2 9 bp overlap
Zic3 1 dataset
Motif DE_60h DE_60h-Zic3_MA0697.3 7 bp overlap