chr13 : 45,332,996 – 45,333,477
481 bp 85 TFs 3 linked genes
This 481 bp open chromatin element is linked to TPT1, ENSG00000273149, and TPT1-AS1 and is bound by 85 transcription factors.
Linked Genes
3 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
TPT1 6.1 kb Proximal Proximity
ENSG00000273149 6.6 kb Proximal Proximity
TPT1-AS1 7.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:45,327,996 – 45,338,477
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
85 transcription factors
Source
Cell type
AGO1 2 datasets
ChIP K-562 GSE120104.AGO1.K-562 155 bp overlap
ChIP K-562 ENCSR641BSL.AGO1.K-562 50 bp overlap
AGO2 3 datasets
ChIP HepG2 ENCFF252VFI 353 bp overlap
ChIP HepG2 ENCFF773YDL 353 bp overlap
ChIP HepG2 ENCFF773YDL 424 bp overlap
ARID1A 1 dataset
ChIP endometrial-epithelial-cells GSE106660.ARID1A.endometrial-epithelial-cells 81 bp overlap
BCL3 1 dataset
ChIP GM12878 ENCSR000BNQ.BCL3.GM12878 77 bp overlap
BRD4 3 datasets
ChIP MDA-MB-231_DMSO GSE116879.BRD4.MDA-MB-231_DMSO 148 bp overlap
ChIP MDA-MB-231_DMSO_rDNA GSE116879.BRD4.MDA-MB-231_DMSO_rDNA 148 bp overlap
ChIP THP-1_iBET-BD1-PMA GSE138084.BRD4.THP-1_iBET-BD1-PMA 481 bp overlap
CDK8 1 dataset
ChIP HCT-116_NOMO GSE38258.CDK8.HCT-116_NOMO 121 bp overlap
CTBP2 1 dataset
ChIP LNCaP_DHT24H GSE58428.CTBP2.LNCaP_DHT24H 79 bp overlap
DPF2 1 dataset
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.DPF2.BIN-67_lentivirus-SMARCA4-K785R 274 bp overlap
Ddit3::Cebpa 1 dataset
Motif ES_0h ES_0h-Ddit3Cebpa_MA0019.2 10 bp overlap
ESR1_pS118 1 dataset
ChIP MCF-7_E2_sc GSE117569.ESR1_pS118.MCF-7_E2_sc 206 bp overlap
ETS1 1 dataset
ChIP OVCAR-8 GSE101832.ETS1.OVCAR-8 159 bp overlap
EWSR1 1 dataset
ChIP K562 ENCFF361XQZ 85 bp overlap
EZH2 1 dataset
ChIP hepatocyte ENCSR384LYW.EZH2.hepatocyte 342 bp overlap
FEZF2 1 dataset
Motif ES_0h ES_0h-FEZF2_MA2341.1 8 bp overlap
FOSB 2 datasets
ChIP A549 ENCFF029EEU 143 bp overlap
ChIP A549 ENCFF029EEU 341 bp overlap
FOXA1 1 dataset
ChIP primary-prostate-cancer_G2_DSG GSE114737.FOXA1.primary-prostate-cancer_G2_DSG 158 bp overlap
GATA4 1 dataset
ChIP DE DE-GATA4-2 133 bp overlap
GATA6 3 datasets
ChIP DE DE-GATA6-2 154 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 134 bp overlap
ChIP OACP4-C GSE132680.GATA6.OACP4-C 86 bp overlap
GFI1B 1 dataset
ChIP HEK293 ENCFF264FBS 92 bp overlap
HMBOX1 3 datasets
ChIP K-562 ENCSR757IIU.HMBOX1.K-562 481 bp overlap
ChIP K562 ENCFF055GAZ 240 bp overlap
ChIP K562 ENCFF317JJX 238 bp overlap
HMGXB4 1 dataset
ChIP A549 ENCFF261MIW 123 bp overlap
HOXA7 2 datasets
ChIP A549 ENCFF746ZBJ 262 bp overlap
ChIP A549 ENCFF746ZBJ 62 bp overlap
HOXA9 1 dataset
ChIP HEK293-FT GSE62586.HOXA9.HEK293-FT 65 bp overlap
HOXC6 1 dataset
ChIP 22Rv1 GSE129951.HOXC6.22Rv1 293 bp overlap
INO80 1 dataset
ChIP Huh-7 GSE97411.INO80.Huh-7 281 bp overlap
Isl1 1 dataset
Motif ES_0h ES_0h-Isl1_MA1608.2 7 bp overlap
JUN 1 dataset
ChIP Karpas-299 GSE151413.JUN.Karpas-299 239 bp overlap
JUND 2 datasets
ChIP A-549 ENCSR000BRF.JUND.A-549 74 bp overlap
ChIP SK-N-SH ENCSR000BSK.JUND.SK-N-SH 162 bp overlap
KMT2A 1 dataset
ChIP L826 GSE83671.KMT2A.L826 202 bp overlap
KMT2D 1 dataset
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.KMT2D.BIN-67_lentivirus-SMARCA4-T910M 221 bp overlap
LHX2 1 dataset
ChIP retina_pigment GSE60024.LHX2.retina_pigment 162 bp overlap
MAFF 2 datasets
ChIP HeLa-S3 ENCSR140DSL.MAFF.HeLa-S3 55 bp overlap
ChIP HepG2 ENCFF452YUT 97 bp overlap
MAFK 4 datasets
ChIP A549 ENCFF371EPR 88 bp overlap
ChIP HepG2 ENCFF743ZOF 84 bp overlap
ChIP HepG2 ENCFF767LDG 88 bp overlap
ChIP IMR-90 ENCFF336DHZ 104 bp overlap
MSX2 1 dataset
ChIP MCF-7 ENCSR604WXQ.MSX2.MCF-7 146 bp overlap
MYC 1 dataset
ChIP CC-LP-1 GSE124430.MYC.CC-LP-1 481 bp overlap
MYNN 1 dataset
ChIP K-562 ENCSR737LTZ.MYNN.K-562 194 bp overlap
NCAPH2 2 datasets
ChIP IMR-90_Bethyl275_OIS GSE118494.NCAPH2.IMR-90_Bethyl275_OIS 224 bp overlap
ChIP IMR-90_FLAG_G GSE118494.NCAPH2.IMR-90_FLAG_G 52 bp overlap
NEUROD1 3 datasets
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 279 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 111 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 211 bp overlap
NKX6-3 1 dataset
Motif ES_0h ES_0h-NKX6-3_MA1530.2 8 bp overlap
NOTCH1 1 dataset
ChIP pulmonary-artery_endothelial-cell_siCtrl GSE89786.NOTCH1.pulmonary-artery_endothelial-cell_siCtrl 155 bp overlap
NR3C1 1 dataset
ChIP BEAS-2B_TNF-DEX_IA1 GSE125623.NR3C1.BEAS-2B_TNF-DEX_IA1 119 bp overlap
OSR2 1 dataset
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 132 bp overlap
OVOL1 2 datasets
ChIP MCF-7 ENCFF537GWI 104 bp overlap
ChIP MCF-7 ENCSR829WBA.OVOL1.MCF-7 176 bp overlap
PBX1-2-3 1 dataset
ChIP 697 GSE138031.PBX1-2-3.697 68 bp overlap
PBX3 1 dataset
ChIP A-549 ENCSR000BTN.PBX3.A-549 134 bp overlap
PHIP 1 dataset
ChIP HCT-116_ab834 GSE101646.PHIP.HCT-116_ab834 481 bp overlap
PML 2 datasets
ChIP GM12878 ENCSR000BQM.PML.GM12878 218 bp overlap
ChIP K-562 ENCSR000BQY.PML.K-562 335 bp overlap
POLR2A 32 datasets
ChIP GM12878 ENCFF412KAE 347 bp overlap
ChIP GM12878 ENCFF412KAE 432 bp overlap
ChIP GM12891 ENCFF012SUT 343 bp overlap
ChIP GM12891 ENCFF379FCI 290 bp overlap
ChIP GM12892 ENCFF245LYF 261 bp overlap
ChIP GM12892 ENCFF506PGQ 394 bp overlap
ChIP GM12892 ENCFF542ZFO 311 bp overlap
ChIP GM12892 ENCFF542ZFO 320 bp overlap
ChIP GM18505 ENCFF311CYB 284 bp overlap
ChIP GM23338 ENCFF450WCS 205 bp overlap
ChIP H1 ENCFF770YBQ 358 bp overlap
ChIP HeLa-S3 ENCFF224LWS 481 bp overlap
ChIP HeLa-S3 ENCFF773DNG 319 bp overlap
ChIP HepG2 ENCFF252NAR 419 bp overlap
ChIP HepG2 ENCFF252NAR 481 bp overlap
ChIP HepG2 ENCFF718XAJ 345 bp overlap
ChIP HepG2 ENCFF736SLT 240 bp overlap
ChIP IMR-90 ENCFF672YWV 254 bp overlap
ChIP K562 ENCFF137JSF 274 bp overlap
ChIP K562 ENCFF215CWW 481 bp overlap
ChIP K562 ENCFF262YXJ 75 bp overlap
ChIP K562 ENCFF757TUO 153 bp overlap
ChIP K562 ENCFF757TUO 357 bp overlap
ChIP K562 ENCFF757TUO 260 bp overlap
ChIP NB4 ENCFF780KAX 235 bp overlap
ChIP PFSK-1 ENCFF576NIT 328 bp overlap
ChIP PFSK-1 ENCFF576NIT 304 bp overlap
ChIP endothelial cell of umbilical vein ENCFF091YHT 384 bp overlap
ChIP endothelial cell of umbilical vein ENCFF131DWO 189 bp overlap
ChIP endothelial cell of umbilical vein ENCFF303XUJ 283 bp overlap
ChIP endothelial cell of umbilical vein ENCFF467WJF 313 bp overlap
ChIP erythroblast ENCFF498VMR 481 bp overlap
POLR2G 6 datasets
ChIP HepG2 ENCFF241AEG 282 bp overlap
ChIP HepG2 ENCFF508UTS 299 bp overlap
ChIP K562 ENCFF047BLG 431 bp overlap
ChIP K562 ENCFF047BLG 144 bp overlap
ChIP K562 ENCFF648YPL 431 bp overlap
ChIP K562 ENCFF648YPL 144 bp overlap
PRDM6 1 dataset
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 133 bp overlap
RARB 1 dataset
ChIP A549 ENCFF837HCQ 59 bp overlap
RBFOX2 3 datasets
ChIP HepG2 ENCFF554DMZ 471 bp overlap
ChIP HepG2 ENCFF939HTZ 468 bp overlap
ChIP K562 ENCFF196WTG 481 bp overlap
RBM22 2 datasets
ChIP HepG2 ENCFF292RVQ 225 bp overlap
ChIP HepG2 ENCFF561IAJ 215 bp overlap
REL 1 dataset
ChIP Ramos GSE139810.REL.Ramos 212 bp overlap
RELA 1 dataset
ChIP aortic-endothelial-cell_IL1B_D47 GSE139377.RELA.aortic-endothelial-cell_IL1B_D47 167 bp overlap
REST 2 datasets
ChIP A-549 ENCSR892DRK.REST.A-549 481 bp overlap
ChIP colorectal-cancer_shCTRL_dissociated GSE112555.REST.colorectal-cancer_shCTRL_dissociated 344 bp overlap
RFX5 2 datasets
ChIP H1 ENCFF605EGG 371 bp overlap
ChIP H1 ENCFF605EGG 179 bp overlap
RPA2_phospho 3 datasets
ChIP HeLa GSE108172.RPA2_phospho.HeLa 160 bp overlap
ChIP HeLa GSE108172.RPA2_phospho.HeLa 133 bp overlap
ChIP HeLa_shASF GSE108172.RPA2_phospho.HeLa_shASF 210 bp overlap
SCRT1 1 dataset
ChIP HEK293 ENCSR605MGM.SCRT1.HEK293 54 bp overlap
SIN3A 1 dataset
ChIP SK-N-SH ENCSR000BPB.SIN3A.SK-N-SH 230 bp overlap
SMAD3 1 dataset
ChIP NCI-H441_SIITTF1 GSE51509.SMAD3.NCI-H441_SIITTF1 68 bp overlap
SMAD5 1 dataset
ChIP GM12878 ENCSR251OVJ.SMAD5.GM12878 85 bp overlap
SMARCA2 1 dataset
ChIP NPC_AM GSE122631.SMARCA2.NPC_AM 102 bp overlap
SMARCA4 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 141 bp overlap
SMARCC1 3 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4 112 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-K785R 316 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-T910M 293 bp overlap
SRSF4 4 datasets
ChIP Hep-G2 GSE120104.SRSF4.Hep-G2 280 bp overlap
ChIP Hep-G2 ENCSR696MBC.SRSF4.Hep-G2 262 bp overlap
ChIP HepG2 ENCFF593CLP 221 bp overlap
ChIP HepG2 ENCFF958PYB 239 bp overlap
SS18 1 dataset
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SS18.BIN-67_lentivirus-SMARCA4-T910M 277 bp overlap
SSRP1 1 dataset
ChIP Hep-G2 ENCSR571PDN.SSRP1.Hep-G2 63 bp overlap
STAT1_pS727 1 dataset
ChIP SET-2 GSE100566.STAT1_pS727.SET-2 99 bp overlap
STAT5A 1 dataset
ChIP GM12878 ENCSR000BQZ.STAT5A.GM12878 183 bp overlap
SUPT5H 8 datasets
ChIP DLD-1_NELFE-AID_treated GSE144786.SUPT5H.DLD-1_NELFE-AID_treated 455 bp overlap
ChIP HCT-116_DMSO_pThr806 GSE138548.SUPT5H.HCT-116_DMSO_pThr806 445 bp overlap
ChIP K562 ENCFF902PAW 471 bp overlap
ChIP U2OS_siMYC GSE115365.SUPT5H.U2OS_siMYC 481 bp overlap
ChIP U2OS_siMYC_High GSE115365.SUPT5H.U2OS_siMYC_High 119 bp overlap
ChIP U2OS_siMYC_High GSE115365.SUPT5H.U2OS_siMYC_High 163 bp overlap
ChIP U2OS_siMYC_ON GSE115365.SUPT5H.U2OS_siMYC_ON 201 bp overlap
ChIP U2OS_siMYC_ON GSE115365.SUPT5H.U2OS_siMYC_ON 81 bp overlap
TEAD4 1 dataset
ChIP Hep-G2 ENCSR000BRP.TEAD4.Hep-G2 135 bp overlap
TP53 3 datasets
ChIP MDA-MB-231 GSE95303.TP53.MDA-MB-231 195 bp overlap
ChIP MDA-MB-231 GSE95303.TP53.MDA-MB-231 176 bp overlap
ChIP SW480_0h_TNFa GSE102796.TP53.SW480_0h_TNFa 129 bp overlap
VENTX 1 dataset
Motif ES_0h ES_0h-VENTX_MA0724.1 9 bp overlap
YY1 4 datasets
ChIP Huh-7 GSE97411.YY1.Huh-7 274 bp overlap
ChIP K-562 ENCSR000BMH.YY1.K-562 105 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 153 bp overlap
ChIP liver ENCSR994YLZ.YY1.liver 232 bp overlap
ZEB2 1 dataset
ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 183 bp overlap
ZNF135 1 dataset
Motif ES_0h ES_0h-ZNF135_MA1587.1 14 bp overlap
ZNF18 1 dataset
ChIP HEK293 ENCFF066NGR 96 bp overlap
ZNF2 1 dataset
ChIP HEK293 ENCSR011CKE.ZNF2.HEK293 197 bp overlap
ZNF316 1 dataset
ChIP K562 ENCFF838QCD 53 bp overlap
ZNF366 1 dataset
ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 130 bp overlap
ZNF425 1 dataset
ChIP WTC11 ENCFF359IXT 150 bp overlap
ZNF823 1 dataset
ChIP HEK293T GSE78099.ZNF823.HEK293T 260 bp overlap
ZSCAN31 1 dataset
Motif ES_0h ES_0h-ZSCAN31_MA1722.2 18 bp overlap
ZSCAN5C 1 dataset
ChIP HEK293 ENCSR731AGO.ZSCAN5C.HEK293 217 bp overlap
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