chr12 : 100,372,760 – 100,373,189

429 bp 85 TFs 0 linked genes

This 429 bp open chromatin element has no linked target genes and is bound by 85 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

85 transcription factors

ARID1A 1 dataset

ChIP HAP1 GSE108387.ARID1A.HAP1 374 bp overlap

BARX1 1 dataset

Motif DE_12h DE_12h-BARX1_MA0875.2 6 bp overlap

BCOR 3 datasets

ChIP WA01 GSE104690.BCOR.WA01 290 bp overlap

ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 308 bp overlap

ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 334 bp overlap

BRD4 2 datasets

ChIP cortical-interneuron GSE117508.BRD4.cortical-interneuron 172 bp overlap

ChIP cortical-interneuron_KCl-pos GSE117508.BRD4.cortical-interneuron_KCl-pos 219 bp overlap

BSX 1 dataset

Motif DE_12h DE_12h-BSX_MA0876.2 6 bp overlap

CBFA2T2 1 dataset

ChIP NCCIT GSE71675.CBFA2T2.NCCIT 281 bp overlap

CEBPB 1 dataset

ChIP WA01 ENCSR000EBV.CEBPB.WA01 125 bp overlap

CHD7 3 datasets

ChIP H1 ENCFF126NLU 156 bp overlap

ChIP WA01 ENCSR000AVA.CHD7.WA01 218 bp overlap

ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 257 bp overlap

CTCF 2 datasets

ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 295 bp overlap

ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 144 bp overlap

DLX1 1 dataset

Motif DE_12h DE_12h-DLX1_MA0879.3 6 bp overlap

DLX6 1 dataset

Motif DE_12h DE_12h-DLX6_MA0882.2 6 bp overlap

Dlx2 1 dataset

Motif DE_12h DE_12h-Dlx2_MA0885.3 8 bp overlap

Dlx3 1 dataset

Motif DE_12h DE_12h-Dlx3_MA0880.2 6 bp overlap

Dlx4 1 dataset

Motif DE_12h DE_12h-Dlx4_MA0881.2 6 bp overlap

Dlx5 1 dataset

Motif DE_12h DE_12h-Dlx5_MA1476.3 8 bp overlap

EBF1 1 dataset

Motif DE_12h DE_12h-EBF1_MA0154.5 11 bp overlap

EBF3 1 dataset

Motif DE_12h DE_12h-EBF3_MA1637.2 9 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 219 bp overlap

EZH2 2 datasets

ChIP THP-1 GSE135024.EZH2.THP-1 208 bp overlap

ChIP astrocyte ENCSR000ARR.EZH2.astrocyte 126 bp overlap

Ebf4 1 dataset

Motif DE_12h DE_12h-Ebf4_MA2122.1 11 bp overlap

FLI1 1 dataset

ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 175 bp overlap

FOXP1 1 dataset

ChIP H9 GSE31006.FOXP1.H9 253 bp overlap

GATA6 7 datasets

ChIP DE DE-GATA6-2 301 bp overlap

ChIP DE_D1 S09-DE-d1-GATA6-exp1 422 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 429 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 421 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 429 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 429 bp overlap

ChIP foregut_KO GSE117136.GATA6.foregut_KO 277 bp overlap

GBX2 1 dataset

Motif DE_12h DE_12h-GBX2_MA0890.2 6 bp overlap

HESX1 1 dataset

Motif DE_12h DE_12h-HESX1_MA0894.2 6 bp overlap

HOXA6 1 dataset

Motif DE_12h DE_12h-HOXA6_MA1497.2 7 bp overlap

HOXA7 1 dataset

Motif DE_12h DE_12h-HOXA7_MA1498.3 6 bp overlap

HOXB6 1 dataset

Motif DE_12h DE_12h-HOXB6_MA1500.2 7 bp overlap

HOXB7 1 dataset

Motif DE_12h DE_12h-HOXB7_MA1501.2 7 bp overlap

HOXB8 2 datasets

ChIP CFPAC-1_HOXB8-OE GSE119930.HOXB8.CFPAC-1_HOXB8-OE 369 bp overlap

Motif DE_12h DE_12h-HOXB8_MA1502.2 7 bp overlap

HOXD3 1 dataset

Motif DE_12h DE_12h-HOXD3_MA0912.2 8 bp overlap

HOXD8 1 dataset

Motif DE_12h DE_12h-HOXD8_MA0910.3 7 bp overlap

IKZF3 1 dataset

ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 177 bp overlap

JUN 2 datasets

ChIP DE_D2 S02-DE-d2-JUN-exp1 364 bp overlap

ChIP ESC S34-ESC-d0-JUN-exp2 174 bp overlap

KLF4 2 datasets

ChIP HAP1 GSE130417.KLF4.HAP1 381 bp overlap

ChIP hiPSC GSE56567.KLF4.hiPSC 312 bp overlap

LBX2 1 dataset

Motif DE_12h DE_12h-LBX2_MA0699.2 6 bp overlap

LHX2 1 dataset

Motif DE_12h DE_12h-LHX2_MA0700.3 6 bp overlap

MSX1 1 dataset

Motif DE_12h DE_12h-MSX1_MA0666.3 6 bp overlap

MSX2 1 dataset

Motif DE_12h DE_12h-MSX2_MA0708.3 6 bp overlap

MYB 1 dataset

Motif DE_12h DE_12h-MYB_MA0100.4 6 bp overlap

Msx3 1 dataset

Motif DE_12h DE_12h-Msx3_MA0709.2 6 bp overlap

NANOG 10 datasets

ChIP GM23338 ENCFF065NZG 299 bp overlap

ChIP GM23338 ENCSR061DGF.NANOG.GM23338 187 bp overlap

ChIP H1 ENCFF747ZPQ 225 bp overlap

ChIP HUES-8 GSE109524.NANOG.HUES-8 429 bp overlap

ChIP WA01 ERP004238.NANOG.WA01 311 bp overlap

ChIP WA01 ENCSR000BMT.NANOG.WA01 279 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 429 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 429 bp overlap

ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 363 bp overlap

ChIP hESC GSE18292.NANOG.hESC 186 bp overlap

Nobox 1 dataset

Motif DE_12h DE_12h-Nobox_MA0125.2 6 bp overlap

PHIP 1 dataset

ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 117 bp overlap

POU1F1 1 dataset

Motif DE_12h DE_12h-POU1F1_MA0784.3 14 bp overlap

POU2F2 1 dataset

Motif DE_12h DE_12h-POU2F2_MA0507.3 13 bp overlap

POU2F3 1 dataset

ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 169 bp overlap

POU3F1 1 dataset

Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap

POU3F2 1 dataset

Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap

POU3F3 1 dataset

Motif DE_12h DE_12h-POU3F3_MA0788.1 13 bp overlap

POU3F4 1 dataset

Motif DE_12h DE_12h-POU3F4_MA0789.1 9 bp overlap

POU5F1 12 datasets

ChIP DE_D1 DED1-OCT4_Batch_II 352 bp overlap

ChIP GM23338 ENCFF333SNB 268 bp overlap

ChIP HUES-8 GSE109524.POU5F1.HUES-8 429 bp overlap

ChIP NCCIT GSE36134.POU5F1.NCCIT 429 bp overlap

ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 429 bp overlap

ChIP WA09 GSE105028.POU5F1.WA09 208 bp overlap

ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 244 bp overlap

ChIP hESC ENCSR264RJX.POU5F1.hESC 166 bp overlap

ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 429 bp overlap

ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 429 bp overlap

ChIP hiPSC GSE56567.POU5F1.hiPSC 220 bp overlap

ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 147 bp overlap

POU5F1_M 1 dataset

ChIP DE_D1 DED1-OCT4-M_Batch_II 429 bp overlap

PRDM14 2 datasets

ChIP NCCIT GSE71675.PRDM14.NCCIT 290 bp overlap

ChIP primordial-germ-cell-like-cell GSE138674.PRDM14.primordial-germ-cell-like-cell 396 bp overlap

PRDM6 3 datasets

ChIP HEK293 ENCFF283AJL 211 bp overlap

ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 368 bp overlap

ChIP HEK293 GSE76494.PRDM6.HEK293 221 bp overlap

RAD21 4 datasets

ChIP HAP1 GSE126634.RAD21.HAP1 429 bp overlap

ChIP HAP1 GSE152721.RAD21.HAP1 364 bp overlap

ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 429 bp overlap

ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 306 bp overlap

RAX 1 dataset

Motif DE_12h DE_12h-RAX_MA0718.2 6 bp overlap

RNF2 1 dataset

ChIP WA09 GSE105028.RNF2.WA09 190 bp overlap

SALL3 1 dataset

ChIP hiPSC GSE104863.SALL3.hiPSC 250 bp overlap

SMAD2-3 2 datasets

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 305 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 282 bp overlap

SMAD2_3 1 dataset

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 277 bp overlap

SMAD3 1 dataset

ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 193 bp overlap

SMARCA4 5 datasets

ChIP A-549_AG15685 GSE132290.SMARCA4.A-549_AG15685 66 bp overlap

ChIP NSC GSE125033.SMARCA4.NSC 246 bp overlap

ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 258 bp overlap

ChIP hiPSC GSE124903.SMARCA4.hiPSC 350 bp overlap

ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 415 bp overlap

SMARCB1 2 datasets

ChIP hiPSC GSE124903.SMARCB1.hiPSC 326 bp overlap

ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 390 bp overlap

SMARCC1 2 datasets

ChIP hiPSC GSE124903.SMARCC1.hiPSC 292 bp overlap

ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 350 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 272 bp overlap

SOX2 5 datasets

ChIP HNSC GSE69479.SOX2.HNSC 311 bp overlap

ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 302 bp overlap

ChIP RENVM GSE49404.SOX2.RENVM 169 bp overlap

ChIP hESC GSE18292.SOX2.hESC 98 bp overlap

ChIP hiPSC GSE56567.SOX2.hiPSC 329 bp overlap

SP1 1 dataset

ChIP H1 ENCFF263FUH 321 bp overlap

SP5 1 dataset

Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap

T 2 datasets

ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 284 bp overlap

ChIP H9_MESODERM GSE60606.T.H9_MESODERM 252 bp overlap

TCF7L1 1 dataset

Motif DE_12h DE_12h-TCF7L1_MA1421.1 12 bp overlap

TFAP2A 2 datasets

Motif DE_12h DE_12h-TFAP2A_MA0810.2 11 bp overlap

ChIP WA09 GSE105081.TFAP2A.WA09 224 bp overlap

TFAP2B 1 dataset

Motif DE_12h DE_12h-TFAP2B_MA0811.2 11 bp overlap

TFAP2C 3 datasets

Motif DE_12h DE_12h-TFAP2C_MA0524.3 11 bp overlap

ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 346 bp overlap

ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 265 bp overlap

TFAP2E 1 dataset

Motif DE_12h DE_12h-TFAP2E_MA1569.2 9 bp overlap

TP53 1 dataset

ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 276 bp overlap

TRIM28 2 datasets

ChIP HEK293 ENCSR618HNF.TRIM28.HEK293 236 bp overlap

ChIP U2OS ENCSR000EYC.TRIM28.U2OS 236 bp overlap

WT1 1 dataset

ChIP HEK293 ENCSR966PJJ.WT1.HEK293 233 bp overlap

YY1 1 dataset

ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 289 bp overlap

ZIC2 1 dataset

ChIP HEK293 ENCFF033NQQ 336 bp overlap

ZNF335 2 datasets

ChIP HEK293 ENCFF784SLD 177 bp overlap

ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 357 bp overlap

ZNF574 1 dataset

ChIP HEK293 GSE76494.ZNF574.HEK293 126 bp overlap

ZNF682 1 dataset

Motif DE_12h DE_12h-ZNF682_MA1599.2 11 bp overlap

ZNF708 1 dataset

Motif DE_12h DE_12h-ZNF708_MA1730.2 9 bp overlap

Zfp335 2 datasets

Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap