chr12 : 88,145,517 88,146,485
968 bp 77 TFs 2 linked genes
This 968 bp open chromatin element is linked to TMTC3 and CEP290 and is bound by 77 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
TMTC3 3.2 kb Proximal Proximity
CEP290 3.7 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:88,140,517 – 88,151,485
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
77 transcription factors
Source
Cell type
ASCL1 1 dataset
Motif ES_0h ES_0h-ASCL1_MA1631.2 9 bp overlap
ASXL3 2 datasets
ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 312 bp overlap
ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 258 bp overlap
ATF7 1 dataset
ChIP GM12878 ENCSR014YCR.ATF7.GM12878 216 bp overlap
BACH1 2 datasets
ChIP H1 ENCFF282VDB 321 bp overlap
ChIP WA01 ENCSR000EBQ.BACH1.WA01 213 bp overlap
BRD3 1 dataset
ChIP HEK293T GSE39579.BRD3.HEK293T 130 bp overlap
BRD4 5 datasets
ChIP HeLa GSE151038.BRD4.HeLa 265 bp overlap
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 214 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 646 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 150 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 467 bp overlap
CHD7 3 datasets
ChIP H1 ENCFF126NLU 583 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 289 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 301 bp overlap
EBF1 1 dataset
ChIP GM12878 ENCFF813OXE 265 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 274 bp overlap
FEZF1 2 datasets
ChIP HEK293 ENCFF528YED 317 bp overlap
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 447 bp overlap
FIGLA 1 dataset
Motif ES_0h ES_0h-FIGLA_MA0820.2 6 bp overlap
FOXA2 3 datasets
ChIP Caco-2 GSE66218.FOXA2.Caco-2 97 bp overlap
ChIP DE DE-FOXA2-1 523 bp overlap
ChIP DE DE-FOXA2-2 507 bp overlap
GATA4 7 datasets
ChIP DE DE-GATA4-1 406 bp overlap
ChIP DE DE-GATA4-2 447 bp overlap
ChIP DE DE-GATA4-2 339 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 240 bp overlap
ChIP foregut GSE117136.GATA4.foregut 257 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 297 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 248 bp overlap
GATA6 13 datasets
ChIP DE DE-GATA6-1 453 bp overlap
ChIP DE DE-GATA6-2 467 bp overlap
ChIP DE DE-GATA6-2 282 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 434 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 327 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 968 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 423 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 497 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 442 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 351 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 342 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 607 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 277 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 117 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 656 bp overlap
HDGF 1 dataset
ChIP K-562 ENCSR197ALX.HDGF.K-562 114 bp overlap
HNF1B 1 dataset
ChIP foregut GSE117136.HNF1B.foregut 191 bp overlap
HNF4A 1 dataset
ChIP KATO-III GSE114018.HNF4A.KATO-III 191 bp overlap
IKZF3 2 datasets
ChIP HEK293 ENCFF518OXG 371 bp overlap
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 289 bp overlap
JUN 7 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 626 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 320 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 526 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 636 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 271 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 346 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 659 bp overlap
KMT2A 10 datasets
ChIP HEK293T_C-term GSE90762.KMT2A.HEK293T_C-term 133 bp overlap
ChIP HEK293T_C-term_C104 GSE90762.KMT2A.HEK293T_C-term_C104 274 bp overlap
ChIP HEK293T_C-term_C104 GSE90762.KMT2A.HEK293T_C-term_C104 336 bp overlap
ChIP HEK293T_C-term_C49 GSE90762.KMT2A.HEK293T_C-term_C49 314 bp overlap
ChIP HEK293T_C-term_C49 GSE90762.KMT2A.HEK293T_C-term_C49 277 bp overlap
ChIP HEK293T_N-term GSE90762.KMT2A.HEK293T_N-term 402 bp overlap
ChIP HEK293T_N-term_shCtrl GSE90762.KMT2A.HEK293T_N-term_shCtrl 336 bp overlap
ChIP HEK293T_N-term_shCtrl GSE90762.KMT2A.HEK293T_N-term_shCtrl 334 bp overlap
ChIP HEK293T_N-term_shCtrl_TASP1-KO GSE90762.KMT2A.HEK293T_N-term_shCtrl_TASP1-KO 169 bp overlap
ChIP HEK293T_N-term_shCtrl_TASP1-KO GSE90762.KMT2A.HEK293T_N-term_shCtrl_TASP1-KO 586 bp overlap
MAFG 1 dataset
ChIP K-562 ENCSR818DQV.MAFG.K-562 277 bp overlap
MAFK 1 dataset
ChIP WA01 ENCSR000EBS.MAFK.WA01 149 bp overlap
MYB 1 dataset
Motif ES_0h ES_0h-MYB_MA0100.4 6 bp overlap
MZF1 1 dataset
ChIP HEK293 ENCSR298QUH.MZF1.HEK293 316 bp overlap
NANOG 6 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 660 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 273 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 701 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 452 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 291 bp overlap
ChIP hESC GSE18292.NANOG.hESC 192 bp overlap
NFE2 4 datasets
ChIP K-562 ENCSR552YGL.NFE2.K-562 242 bp overlap
ChIP K-562 ENCSR000FCC.NFE2.K-562 122 bp overlap
ChIP K562 ENCFF047YKA 405 bp overlap
ChIP K562 ENCFF163BSI 265 bp overlap
NFE2L1 1 dataset
ChIP WTC11 ENCFF644BPU 377 bp overlap
NRF1 1 dataset
ChIP HeLa-S3 GSE108856.NRF1.HeLa-S3 300 bp overlap
PAX5 2 datasets
ChIP NALM-6 GSE126300.PAX5.NALM-6 203 bp overlap
ChIP fetal_testis GSE100639.PAX5.fetal_testis 165 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 792 bp overlap
PRDM10 1 dataset
ChIP HEK293 ENCFF145WQQ 291 bp overlap
PRDM4 2 datasets
ChIP HEK293 ENCFF069PHD 108 bp overlap
ChIP HEK293 ENCSR443MVV.PRDM4.HEK293 284 bp overlap
PRDM6 1 dataset
ChIP HEK293 ENCFF283AJL 233 bp overlap
PSIP1 1 dataset
ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 144 bp overlap
SCRT1 1 dataset
ChIP HEK293 ENCSR605MGM.SCRT1.HEK293 498 bp overlap
SCRT2 1 dataset
ChIP HEK293 ENCFF711QQB 482 bp overlap
SIX1 1 dataset
Motif ES_0h ES_0h-SIX1_MA1118.2 9 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 414 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 353 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 442 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 434 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 306 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 309 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 328 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 416 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 397 bp overlap
SMARCC1 2 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 541 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 323 bp overlap
SNAI1 1 dataset
Motif ES_0h ES_0h-SNAI1_MA1558.2 7 bp overlap
SOX11 1 dataset
ChIP GRANT-A519 GSE52146.SOX11.GRANT-A519 109 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 749 bp overlap
SP7 3 datasets
ChIP HEK293 ENCFF733RBE 481 bp overlap
ChIP HEK293 ENCSR468IJT.SP7.HEK293 232 bp overlap
ChIP HEK293 ENCSR468IJT.SP7.HEK293 256 bp overlap
Sox11 1 dataset
Motif DE_12h DE_12h-Sox11_MA0869.3 8 bp overlap
Sox17 1 dataset
Motif DE_12h DE_12h-Sox17_MA0078.3 10 bp overlap
Sox6 1 dataset
Motif DE_12h DE_12h-Sox6_MA0515.1 10 bp overlap
Sox7 1 dataset
Motif DE_12h DE_12h-Sox7_MA2095.1 10 bp overlap
TCF12 1 dataset
Motif ES_0h ES_0h-TCF12_MA1648.2 7 bp overlap
TCF3 1 dataset
Motif ES_0h ES_0h-TCF3_MA0522.4 7 bp overlap
TCF4 1 dataset
Motif ES_0h ES_0h-TCF4_MA0830.3 8 bp overlap
THRA 1 dataset
Motif ES_0h ES_0h-THRA_MA1969.2 18 bp overlap
THRB 1 dataset
Motif ES_0h ES_0h-THRB_MA1576.2 18 bp overlap
TP63 1 dataset
ChIP SUIT-2 GSE115461.TP63.SUIT-2 83 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 134 bp overlap
ZBTB8A 1 dataset
ChIP HEK293 ENCFF303WRD 571 bp overlap
ZEB1 1 dataset
Motif ES_0h ES_0h-ZEB1_MA0103.4 6 bp overlap
ZIM3 2 datasets
ChIP HEK293 GSE76494.ZIM3.HEK293 279 bp overlap
ChIP HEK293T GSE78099.ZIM3.HEK293T 232 bp overlap
ZNF189 2 datasets
ChIP HEK293 ENCSR163RYW.ZNF189.HEK293 167 bp overlap
ChIP HEK293 ENCSR163RYW.ZNF189.HEK293 305 bp overlap
ZNF316 1 dataset
ChIP K562 ENCFF838QCD 417 bp overlap
ZNF462 1 dataset
ChIP GM23338 ENCFF896CCA 251 bp overlap
ZNF582 1 dataset
Motif ES_0h ES_0h-ZNF582_MA1983.2 19 bp overlap
ZNF600 2 datasets
ChIP HEK293 ENCFF785JSX 501 bp overlap
ChIP HEK293 ENCFF785JSX 377 bp overlap
ZNF667 1 dataset
Motif ES_0h ES_0h-ZNF667_MA1984.2 11 bp overlap
ZNF677 1 dataset
Motif DE_12h DE_12h-ZNF677_MA2101.1 12 bp overlap
ZNF843 2 datasets
ChIP HEK293 ENCFF241QRH 445 bp overlap
ChIP HEK293 ENCSR502KPJ.ZNF843.HEK293 514 bp overlap
ZXDB 1 dataset
ChIP HEK293 ENCSR559IOZ.ZXDB.HEK293 248 bp overlap