chr12 : 72,610,887 – 72,611,312

425 bp 89 TFs 1 linked gene

This 425 bp open chromatin element is linked to CHCHD3P2 and is bound by 89 transcription factors.

Linked Genes

1 gene

Gene	Expression	Dist. to TSS	Distance	Link type
CHCHD3P2		210 bp	At TSS	Proximity

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

89 transcription factors

ATF2 1 dataset

ChIP WA01 ENCSR000BQU.ATF2.WA01 225 bp overlap

Ascl2 1 dataset

Motif DE_12h DE_12h-Ascl2_MA0816.1 10 bp overlap

BCL6B 1 dataset

Motif DE_12h DE_12h-BCL6B_MA0731.1 17 bp overlap

BHLHE22 1 dataset

Motif DE_12h DE_12h-BHLHE22_MA1635.2 6 bp overlap

BRD4 2 datasets

ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 230 bp overlap

ChIP hESC GSE33281.BRD4.hESC 61 bp overlap

CBFA2T3 1 dataset

ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 187 bp overlap

CTCF 2 datasets

ChIP erythroid GSE67783.CTCF.erythroid 258 bp overlap

ChIP hepatocyte ERP000395.CTCF.hepatocyte 212 bp overlap

E2F6 1 dataset

ChIP WA01 ENCSR000BSI.E2F6.WA01 122 bp overlap

ERF::NHLH1 1 dataset

Motif DE_12h DE_12h-ERFNHLH1_MA1938.2 16 bp overlap

ESRRG 1 dataset

ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 243 bp overlap

ETV2::DRGX 1 dataset

Motif DE_12h DE_12h-ETV2DRGX_MA1940.2 12 bp overlap

ETV2::FOXI1 1 dataset

Motif DE_12h DE_12h-ETV2FOXI1_MA1942.2 11 bp overlap

ETV5::DRGX 1 dataset

Motif DE_12h DE_12h-ETV5DRGX_MA1944.2 12 bp overlap

ETV5::FOXI1 1 dataset

Motif DE_12h DE_12h-ETV5FOXI1_MA1946.2 12 bp overlap

EWSR1-FLI1 1 dataset

Motif DE_12h DE_12h-EWSR1-FLI1_MA0149.1 18 bp overlap

FIGLA 2 datasets

Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap

FLI1::DRGX 1 dataset

Motif DE_12h DE_12h-FLI1DRGX_MA1949.2 14 bp overlap

FOXH1 1 dataset

Motif DE_12h DE_12h-FOXH1_MA0479.2 8 bp overlap

FOXO1::ELK1 1 dataset

Motif DE_12h DE_12h-FOXO1ELK1_MA1954.2 13 bp overlap

GATA2 1 dataset

ChIP hiPSC_SLC9ebs GSE107639.GATA2.hiPSC_SLC9ebs 189 bp overlap

HDAC2 1 dataset

ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 204 bp overlap

HNF4A 1 dataset

Motif DE_12h DE_12h-HNF4A_MA0114.5 9 bp overlap

HNF4G 1 dataset

Motif DE_12h DE_12h-HNF4G_MA0484.3 9 bp overlap

IKZF2 1 dataset

Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap

Irf1 1 dataset

Motif DE_12h DE_12h-Irf1_MA0050.4 11 bp overlap

MED26 1 dataset

ChIP HEK293T GSE121024.MED26.HEK293T 179 bp overlap

MEIS1 1 dataset

Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap

MORC2 1 dataset

ChIP H9 GSE95374.MORC2.H9 319 bp overlap

MSC 1 dataset

Motif DE_12h DE_12h-MSC_MA0665.1 10 bp overlap

MYOD1 1 dataset

ChIP RH4 GSE83726.MYOD1.RH4 279 bp overlap

MYOG 1 dataset

Motif DE_12h DE_12h-MYOG_MA0500.3 8 bp overlap

Mecom 1 dataset

Motif DE_12h DE_12h-Mecom_MA0029.2 11 bp overlap

NANOG 6 datasets

ChIP GM23338 ENCFF065NZG 311 bp overlap

ChIP GM23338 ENCSR061DGF.NANOG.GM23338 176 bp overlap

ChIP HUES-8 GSE109524.NANOG.HUES-8 425 bp overlap

ChIP WA01 ENCSR000BMT.NANOG.WA01 138 bp overlap

ChIP WA01 ERP004238.NANOG.WA01 313 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 252 bp overlap

NFIA 2 datasets

Motif DE_12h DE_12h-NFIA_MA0670.2 6 bp overlap

NFIX 2 datasets

Motif DE_12h DE_12h-NFIX_MA0671.2 6 bp overlap

NFYA 1 dataset

Motif DE_12h DE_12h-NFYA_MA0060.4 8 bp overlap

NFYB 1 dataset

Motif DE_12h DE_12h-NFYB_MA0502.3 9 bp overlap

NR1H2::RXRA 1 dataset

Motif DE_12h DE_12h-NR1H2RXRA_MA0115.1 17 bp overlap

NR1H4::RXRA 1 dataset

Motif DE_12h DE_12h-NR1H4RXRA_MA1146.2 13 bp overlap

NR1I3 1 dataset

Motif DE_12h DE_12h-NR1I3_MA1534.2 8 bp overlap

NR2F1 1 dataset

Motif DE_12h DE_12h-NR2F1_MA1538.1 15 bp overlap

NR2F6 1 dataset

Motif DE_12h DE_12h-NR2F6_MA1539.1 15 bp overlap

NR4A2::RXRA 1 dataset

Motif DE_12h DE_12h-NR4A2RXRA_MA1147.2 13 bp overlap

NRIP1 1 dataset

ChIP MCF-7_E2 ERP005838.NRIP1.MCF-7_E2 131 bp overlap

Neurod2 1 dataset

Motif DE_12h DE_12h-Neurod2_MA1993.2 6 bp overlap

OTX2 1 dataset

ChIP WTC11 ENCFF634NAO 245 bp overlap

Olig2 1 dataset

Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap

PBX3 1 dataset

Motif DE_12h DE_12h-PBX3_MA1114.2 11 bp overlap

PKNOX1 1 dataset

Motif DE_12h DE_12h-PKNOX1_MA0782.3 10 bp overlap

POU4F2 1 dataset

Motif DE_12h DE_12h-POU4F2_MA0683.2 15 bp overlap

POU5F1 1 dataset

ChIP HUES-8 GSE109524.POU5F1.HUES-8 425 bp overlap

PRDM1 1 dataset

Motif DE_12h DE_12h-PRDM1_MA0508.4 7 bp overlap

Ptf1A 1 dataset

Motif DE_12h DE_12h-Ptf1A_MA1620.2 8 bp overlap

RAD21 2 datasets

ChIP GM12878 ENCSR000BMY.RAD21.GM12878 104 bp overlap

ChIP H1 ENCFF698EWO 241 bp overlap

Rarg 1 dataset

Motif DE_12h DE_12h-Rarg_MA0860.1 17 bp overlap

SIN3A 2 datasets

ChIP H1 ENCFF042ZSL 425 bp overlap

ChIP WA01 ENCSR000EBO.SIN3A.WA01 128 bp overlap

SMAD2-3 1 dataset

ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 336 bp overlap

SMAD3 2 datasets

ChIP BG03 GSE21614.SMAD3.BG03 259 bp overlap

Motif DE_12h DE_12h-SMAD3_MA0795.1 10 bp overlap

SMAD5 1 dataset

Motif DE_12h DE_12h-SMAD5_MA1557.1 10 bp overlap

SNAI2 1 dataset

ChIP SMS-CTR_D48 GSE137168.SNAI2.SMS-CTR_D48 186 bp overlap

SOX10 1 dataset

Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap

SOX8 1 dataset

ChIP RH4_Entinostat-6H GSE116344.SOX8.RH4_Entinostat-6H 201 bp overlap

SPIC 1 dataset

Motif DE_12h DE_12h-SPIC_MA0687.2 13 bp overlap

STAG1 1 dataset

ChIP erythroid GSE67783.STAG1.erythroid 180 bp overlap

Six3 1 dataset

Motif DE_12h DE_12h-Six3_MA0631.2 11 bp overlap

Stat2 1 dataset

Motif DE_12h DE_12h-Stat2_MA1623.2 10 bp overlap

TAL1 4 datasets

ChIP K-562_dCas9-LSD1 GSE132212.TAL1.K-562_dCas9-LSD1 187 bp overlap

ChIP K-562_enCRISPRi-KL GSE132212.TAL1.K-562_enCRISPRi-KL 173 bp overlap

ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 200 bp overlap

ChIP ProEs GSE59087.TAL1.ProEs 117 bp overlap

TCF12 2 datasets

ChIP H1 ENCFF203EBH 251 bp overlap

ChIP WA01 ENCSR000BIT.TCF12.WA01 252 bp overlap

TCF3 1 dataset

ChIP NPC GSE154479.TCF3.NPC 341 bp overlap

TCF4 1 dataset

Motif DE_12h DE_12h-TCF4_MA0830.3 8 bp overlap

TRIM28 1 dataset

ChIP hESC GSE115387.TRIM28.hESC 235 bp overlap

Tcf12 1 dataset

Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap

Twist2 1 dataset

Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap

ZBTB18 1 dataset

Motif DE_12h DE_12h-ZBTB18_MA0698.2 11 bp overlap

ZBTB7A 1 dataset

ChIP HUDEP-2 GSE103445.ZBTB7A.HUDEP-2 244 bp overlap

ZEB1 2 datasets

Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap

ZIM3 1 dataset

Motif DE_12h DE_12h-ZIM3_MA1709.2 11 bp overlap

ZKSCAN5 1 dataset

Motif DE_12h DE_12h-ZKSCAN5_MA1652.2 9 bp overlap

ZNF114 1 dataset

ChIP GM23338 ENCFF631OSW 65 bp overlap

ZNF140 1 dataset

Motif DE_12h DE_12h-ZNF140_MA1589.2 19 bp overlap

ZNF143 1 dataset

ChIP FLP143HA_T4 GSE39263.ZNF143.FLP143HA_T4 145 bp overlap

ZNF189 1 dataset

Motif DE_12h DE_12h-ZNF189_MA1725.2 9 bp overlap

ZNF257 1 dataset

Motif DE_12h DE_12h-ZNF257_MA1710.2 10 bp overlap

ZNF462 1 dataset

ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 256 bp overlap

ZNF549 1 dataset

Motif DE_12h DE_12h-ZNF549_MA1728.2 8 bp overlap

ZNF701 1 dataset

Motif DE_12h DE_12h-ZNF701_MA1987.2 17 bp overlap

ZNF768 1 dataset

Motif DE_12h DE_12h-ZNF768_MA1731.2 9 bp overlap

Zic1::Zic2 1 dataset

Motif DE_12h DE_12h-Zic1Zic2_MA1628.2 7 bp overlap

Zic3 1 dataset

Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap