chr12 : 58,916,902 – 58,917,025
123 bp 66 TFs 2 linked genes
This 123 bp open chromatin element is linked to LRIG3 and LRIG3-DT and is bound by 66 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LRIG3 3.5 kb Proximal Proximity
LRIG3-DT 3.6 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:58,911,902 – 58,922,025
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
66 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP NGP GSE134626.ARID1A.NGP 58 bp overlap
ARNT 2 datasets
ChIP HEK293T ENCFF302BEZ 82 bp overlap
ChIP HEK293T ENCSR760UKJ.ARNT.HEK293T 51 bp overlap
BRD2 2 datasets
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 104 bp overlap
ChIP SK-MEL-147_JQ1 GSE94488.BRD2.SK-MEL-147_JQ1 54 bp overlap
BRD3 1 dataset
ChIP HEK293T GSE39579.BRD3.HEK293T 74 bp overlap
BRD4 5 datasets
ChIP HAP1 GSE108387.BRD4.HAP1 123 bp overlap
ChIP HCC1395 GSE63581.BRD4.HCC1395 123 bp overlap
ChIP MPNST_PDJQ GSE62499.BRD4.MPNST_PDJQ 123 bp overlap
ChIP SGBS_TNF GSE64233.BRD4.SGBS_TNF 123 bp overlap
ChIP T-47D_DMSO GSE63581.BRD4.T-47D_DMSO 106 bp overlap
CDK8 1 dataset
ChIP leiomyoma_PT886 GSE128230.CDK8.leiomyoma_PT886 104 bp overlap
CEBPA 3 datasets
ChIP Hep-G2 ERP000209.CEBPA.Hep-G2 122 bp overlap
ChIP T-47D_progesterone GSE132649.CEBPA.T-47D_progesterone 123 bp overlap
ChIP liver ERP002306.CEBPA.liver 123 bp overlap
CEBPB 4 datasets
ChIP HFOB_DIFF GSE82295.CEBPB.HFOB_DIFF 123 bp overlap
ChIP IMR-90 ENCFF468UGY 123 bp overlap
ChIP WA01 ENCSR000EBV.CEBPB.WA01 123 bp overlap
ChIP hMSC GSE68864.CEBPB.hMSC 123 bp overlap
CEBPD 1 dataset
ChIP HAEC_IL1b_4h GSE89970.CEBPD.HAEC_IL1b_4h 123 bp overlap
CHD7 2 datasets
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 123 bp overlap
ChIP hiPSC_derived_neural-crest-cell GSE108506.CHD7.hiPSC_derived_neural-crest-cell 101 bp overlap
CTBP1 1 dataset
ChIP HEK293T ENCFF003PDY 123 bp overlap
EZH2_phosphoT487 2 datasets
ChIP hepatocyte ENCSR341VYI.EZH2_phosphoT487.hepatocyte 63 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR886KKK.EZH2_phosphoT487.neuron_bipolar_doxy_4d 80 bp overlap
FEZF1 1 dataset
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 111 bp overlap
FLI1 3 datasets
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 123 bp overlap
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 123 bp overlap
ChIP A-673_D17 GSE129155.FLI1.A-673_D17 123 bp overlap
FOS 3 datasets
ChIP IMR-90 ENCSR124AIG.FOS.IMR-90 66 bp overlap
ChIP endothelial cell of umbilical vein ENCFF415XBG 123 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EVU.FOS.endothelial_umbilical-vein 123 bp overlap
FOSL1 1 dataset
ChIP BT-549 GSE46166.FOSL1.BT-549 98 bp overlap
FOSL2 2 datasets
ChIP NPC_K755R-pos GSE122631.FOSL2.NPC_K755R-pos 123 bp overlap
ChIP NPC_R1159Q GSE122631.FOSL2.NPC_R1159Q 115 bp overlap
GFI1B 2 datasets
ChIP HEK293 ENCFF264FBS 123 bp overlap
ChIP HEK293 ENCSR445PDR.GFI1B.HEK293 123 bp overlap
GLIS1 1 dataset
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 75 bp overlap
HNF4A 1 dataset
ChIP liver ENCFF449HPV 94 bp overlap
IKZF3 1 dataset
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 123 bp overlap
INO80 1 dataset
ChIP Huh-7 GSE97411.INO80.Huh-7 111 bp overlap
JUN 2 datasets
ChIP BT-549 GSE46166.JUN.BT-549 87 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 123 bp overlap
KLF10 2 datasets
ChIP HEK293 ENCFF326EGX 123 bp overlap
ChIP HEK293 ENCSR006GAQ.KLF10.HEK293 123 bp overlap
KMT2A 2 datasets
ChIP HEK293T_C-term_C49 GSE90762.KMT2A.HEK293T_C-term_C49 123 bp overlap
ChIP HEK293T_N-term_shCtrl_TASP1-KO GSE90762.KMT2A.HEK293T_N-term_shCtrl_TASP1-KO 79 bp overlap
MAF 1 dataset
ChIP keratinocyte_epidermal_PROLIF GSE52953.MAF.keratinocyte_epidermal_PROLIF 119 bp overlap
MAFB 1 dataset
ChIP islet ERP004003.MAFB.islet 123 bp overlap
MAFK 4 datasets
ChIP H1 ENCFF854XWE 123 bp overlap
ChIP Hep-G2 ENCSR000EDZ.MAFK.Hep-G2 115 bp overlap
ChIP IMR-90 ENCFF336DHZ 123 bp overlap
ChIP WA01 ENCSR000EBS.MAFK.WA01 123 bp overlap
MED1 12 datasets
ChIP SGBS GSE64233.MED1.SGBS 123 bp overlap
ChIP SGBS_TNF GSE64233.MED1.SGBS_TNF 108 bp overlap
ChIP hMSC-TERT4_D14 GSE104537.MED1.hMSC-TERT4_D14 123 bp overlap
ChIP hMSC-TERT4_D3 GSE104537.MED1.hMSC-TERT4_D3 116 bp overlap
ChIP hMSC-TERT4_D7 GSE104537.MED1.hMSC-TERT4_D7 123 bp overlap
ChIP hMSC-TERT4_adipocyte-D1 GSE113253.MED1.hMSC-TERT4_adipocyte-D1 95 bp overlap
ChIP hMSC-TERT4_adipocyte-D14 GSE113253.MED1.hMSC-TERT4_adipocyte-D14 123 bp overlap
ChIP hMSC-TERT4_adipocyte-D3 GSE113253.MED1.hMSC-TERT4_adipocyte-D3 123 bp overlap
ChIP hMSC-TERT4_adipocyte-D7 GSE113253.MED1.hMSC-TERT4_adipocyte-D7 123 bp overlap
ChIP hMSC-TERT4_osteoblast-4H GSE113253.MED1.hMSC-TERT4_osteoblast-4H 103 bp overlap
ChIP hMSC-TERT4_osteoblast-D3 GSE113253.MED1.hMSC-TERT4_osteoblast-D3 55 bp overlap
ChIP hMSC-TERT4_osteoblast-D7 GSE113253.MED1.hMSC-TERT4_osteoblast-D7 115 bp overlap
MED12 2 datasets
ChIP leiomyoma_PT886 GSE128230.MED12.leiomyoma_PT886 123 bp overlap
ChIP leiomyoma_PT967 GSE128230.MED12.leiomyoma_PT967 56 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 123 bp overlap
MYOD1 2 datasets
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 123 bp overlap
ChIP myoblast GSE50413.MYOD1.myoblast 54 bp overlap
MYOG 2 datasets
ChIP RH4 GSE83726.MYOG.RH4 87 bp overlap
ChIP RH4_Entinostat-6H GSE116344.MYOG.RH4_Entinostat-6H 123 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 123 bp overlap
NCOR2 1 dataset
ChIP LS180_125 GSE39277.NCOR2.LS180_125 87 bp overlap
NEUROD1 3 datasets
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 123 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 123 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 123 bp overlap
NEUROG2 1 dataset
ChIP MRC-5_NFD_1DPT GSE75910.NEUROG2.MRC-5_NFD_1DPT 123 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 83 bp overlap
PKNOX1 2 datasets
ChIP HEK293T ENCFF174WDB 74 bp overlap
ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 123 bp overlap
POLR2A 2 datasets
ChIP PFSK-1 ENCFF576NIT 123 bp overlap
ChIP SK-N-MC ENCFF088IVG 123 bp overlap
PRDM10 1 dataset
ChIP HEK293 ENCFF145WQQ 123 bp overlap
PRDM4 1 dataset
ChIP HEK293 ENCSR443MVV.PRDM4.HEK293 58 bp overlap
PRDM6 2 datasets
ChIP HEK293 ENCFF283AJL 123 bp overlap
ChIP HEK293 GSE76494.PRDM6.HEK293 72 bp overlap
RAD21 1 dataset
ChIP liver ENCFF522JHE 123 bp overlap
RARA 1 dataset
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 123 bp overlap
RELA 6 datasets
ChIP SGBS GSE64233.RELA.SGBS 119 bp overlap
ChIP SGBS_TNF GSE64233.RELA.SGBS_TNF 123 bp overlap
ChIP aortic-endothelial-cell_IL1B_D13 GSE139377.RELA.aortic-endothelial-cell_IL1B_D13 69 bp overlap
ChIP aortic-endothelial-cell_IL1B_D2 GSE139377.RELA.aortic-endothelial-cell_IL1B_D2 123 bp overlap
ChIP aortic-endothelial-cell_IL1B_D25 GSE139377.RELA.aortic-endothelial-cell_IL1B_D25 97 bp overlap
ChIP aortic-endothelial-cell_IL1B_D38 GSE139377.RELA.aortic-endothelial-cell_IL1B_D38 79 bp overlap
SMARCA2 5 datasets
ChIP NPC_AM GSE122631.SMARCA2.NPC_AM 92 bp overlap
ChIP NPC_K755R-pos_ab GSE122631.SMARCA2.NPC_K755R-pos_ab 123 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA2.NPC_K755R-siAP 123 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA2.NPC_K755R-siCT 123 bp overlap
ChIP NPC_R1159Q_AM GSE122631.SMARCA2.NPC_R1159Q_AM 123 bp overlap
SMARCA4 7 datasets
ChIP Aska-SS_shSSX GSE108025.SMARCA4.Aska-SS_shSSX 123 bp overlap
ChIP NPC_K755R-pos GSE122631.SMARCA4.NPC_K755R-pos 123 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 123 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA4.NPC_K755R-siCT 123 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 123 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 123 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 123 bp overlap
SMARCB1 1 dataset
ChIP hiPSC GSE124903.SMARCB1.hiPSC 123 bp overlap
SMARCC1 8 datasets
ChIP Aska-SS_shSSX GSE108025.SMARCC1.Aska-SS_shSSX 123 bp overlap
ChIP DE_D1 S10-DE-d1-BAF155-exp1 123 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 123 bp overlap
ChIP SK-N-MC GSE94275.SMARCC1.SK-N-MC 123 bp overlap
ChIP SYO-1 GSE108025.SMARCC1.SYO-1 123 bp overlap
ChIP SYO-1_shCt GSE139053.SMARCC1.SYO-1_shCt 123 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 123 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 123 bp overlap
SP5_Zebrafish 1 dataset
ChIP HEK293_Zebrafish_dDBD GSE121316.SP5_Zebrafish.HEK293_Zebrafish_dDBD 88 bp overlap
STAT3 1 dataset
ChIP MDA-MB-157_EtOH GSE85579.STAT3.MDA-MB-157_EtOH 84 bp overlap
TWIST1 4 datasets
ChIP SHEP-21N GSE80151.TWIST1.SHEP-21N 123 bp overlap
ChIP SHEP-21N GSE80151.TWIST1.SHEP-21N 80 bp overlap
ChIP SHEP-21N_24h GSE80151.TWIST1.SHEP-21N_24h 123 bp overlap
ChIP SHEP-21N_DOX_0H GSE80151.TWIST1.SHEP-21N_DOX_0H 123 bp overlap
UBN1 1 dataset
ChIP HeLa GSE45024.UBN1.HeLa 123 bp overlap
YY1 2 datasets
ChIP Hep-G2_NC GSE120104.YY1.Hep-G2_NC 123 bp overlap
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 123 bp overlap
ZBTB44 1 dataset
ChIP HEK293 ENCSR076STQ.ZBTB44.HEK293 123 bp overlap
ZFP69B 1 dataset
ChIP HEK293 ENCSR381VYR.ZFP69B.HEK293 123 bp overlap
ZKSCAN2 1 dataset
ChIP HEK293T GSE78099.ZKSCAN2.HEK293T 123 bp overlap
ZNF18 2 datasets
ChIP HEK293 ENCFF066NGR 89 bp overlap
ChIP HEK293 ENCSR977HTH.ZNF18.HEK293 109 bp overlap
ZNF182 1 dataset
ChIP HEK293T GSE78099.ZNF182.HEK293T 123 bp overlap
ZNF335 1 dataset
ChIP HEK293 ENCFF784SLD 123 bp overlap
ZNF449 1 dataset
ChIP HEK293 ENCSR738SLS.ZNF449.HEK293 123 bp overlap
ZNF561 1 dataset
ChIP HEK293 ENCSR125ULS.ZNF561.HEK293 109 bp overlap
ZNF600 1 dataset
ChIP HEK293 ENCFF785JSX 87 bp overlap
ZNF692 3 datasets
ChIP HEK293 ENCFF040AZE 123 bp overlap
ChIP HEK293 ENCFF040AZE 109 bp overlap
ChIP HEK293 ENCSR418MKG.ZNF692.HEK293 123 bp overlap
ZXDB 1 dataset
ChIP HEK293 ENCSR559IOZ.ZXDB.HEK293 63 bp overlap
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