chr1 : 209,386,864 209,387,549
685 bp 66 TFs 0 linked genes
This 685 bp open chromatin element has no linked target genes and is bound by 66 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:209,381,864 – 209,392,549
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
66 transcription factors
Source
Cell type
AR 1 dataset
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 105 bp overlap
ARID1A 2 datasets
ChIP LNCaP_r1881 GSE94682.ARID1A.LNCaP_r1881 148 bp overlap
ChIP RMG-I GSE104545.ARID1A.RMG-I 96 bp overlap
ARNTL 1 dataset
ChIP U2OS_DMOG GSE85096.ARNTL.U2OS_DMOG 290 bp overlap
ATF3 1 dataset
ChIP HCT-116_CAMP GSE74355.ATF3.HCT-116_CAMP 177 bp overlap
BRD2 9 datasets
ChIP HCC1806_BAZ2BsiRNA GSE116879.BRD2.HCC1806_BAZ2BsiRNA 194 bp overlap
ChIP HCC1806_NTsiRNA GSE116879.BRD2.HCC1806_NTsiRNA 143 bp overlap
ChIP MDA-MB-231_DMSO GSE116879.BRD2.MDA-MB-231_DMSO 326 bp overlap
ChIP MDA-MB-231_DMSO_rDNA GSE116879.BRD2.MDA-MB-231_DMSO_rDNA 326 bp overlap
ChIP MDA-MB-231_NTsiRNA GSE116879.BRD2.MDA-MB-231_NTsiRNA 352 bp overlap
ChIP SUM149PT_DMSO GSE131097.BRD2.SUM149PT_DMSO 353 bp overlap
ChIP SUM149PT_JQ1 GSE131097.BRD2.SUM149PT_JQ1 173 bp overlap
ChIP SUM149PT_R_DMSO GSE131097.BRD2.SUM149PT_R_DMSO 316 bp overlap
ChIP SUM149PT_R_JQ1 GSE131097.BRD2.SUM149PT_R_JQ1 275 bp overlap
BRD3 1 dataset
ChIP H-1_DE GSE126661.BRD3.H-1_DE 207 bp overlap
BRD4 14 datasets
ChIP HCC1395 GSE63581.BRD4.HCC1395 237 bp overlap
ChIP HCC1806_100nMtrametinib_24h GSE87418.BRD4.HCC1806_100nMtrametinib_24h 409 bp overlap
ChIP HCC1806_300nMJQ1_24h GSE87418.BRD4.HCC1806_300nMJQ1_24h 257 bp overlap
ChIP HCC1937 GSE124748.BRD4.HCC1937 230 bp overlap
ChIP MDA-MB-231_JQ1-neg_L GSE136151.BRD4.MDA-MB-231_JQ1-neg_L 252 bp overlap
ChIP PC-3_GDC-R GSE137207.BRD4.PC-3_GDC-R 630 bp overlap
ChIP SUM149PT_DMSO GSE131097.BRD4.SUM149PT_DMSO 184 bp overlap
ChIP SUM149_DMSO GSE63581.BRD4.SUM149_DMSO 357 bp overlap
ChIP SUM159PT_100nMtrametinib_1h GSE87418.BRD4.SUM159PT_100nMtrametinib_1h 224 bp overlap
ChIP SUM159PT_DMSO GSE131097.BRD4.SUM159PT_DMSO 472 bp overlap
ChIP SUM159PT_KO GSE131097.BRD4.SUM159PT_KO 98 bp overlap
ChIP SUM159PT_scramble GSE131097.BRD4.SUM159PT_scramble 566 bp overlap
ChIP SUM229PE_pos_30nMtrametinib_24h GSE87418.BRD4.SUM229PE_pos_30nMtrametinib_24h 541 bp overlap
ChIP SUM229PE_pos_DMSO_24h GSE87418.BRD4.SUM229PE_pos_DMSO_24h 456 bp overlap
BRD9 1 dataset
ChIP MDA-MB-231_DMSO GSE116879.BRD9.MDA-MB-231_DMSO 311 bp overlap
CBX3 1 dataset
ChIP HCT116 ENCFF947BOL 240 bp overlap
CREBBP 2 datasets
ChIP keratinocyte GSE140991.CREBBP.keratinocyte 404 bp overlap
ChIP keratinocyte_KLF3i GSE140991.CREBBP.keratinocyte_KLF3i 370 bp overlap
CRY1 2 datasets
ChIP U2OS GSE130602.CRY1.U2OS 326 bp overlap
ChIP U2OS_DMSO GSE130506.CRY1.U2OS_DMSO 326 bp overlap
CTCF 1 dataset
ChIP islet GSE23784.CTCF.islet 60 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF896HSY 251 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 93 bp overlap
EHF 1 dataset
ChIP RWPE-1 GSE114241.EHF.RWPE-1 284 bp overlap
ELF3 3 datasets
ChIP PDAC GSE64557.ELF3.PDAC 375 bp overlap
ChIP PDAC_KOKLF5 GSE64557.ELF3.PDAC_KOKLF5 431 bp overlap
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 430 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 198 bp overlap
ESR1 1 dataset
ChIP breast_tumor_BADOUTCOME GSE40867.ESR1.breast_tumor_BADOUTCOME 69 bp overlap
FOS 1 dataset
ChIP MCF-10A ENCSR000DON.FOS.MCF-10A 242 bp overlap
FOSL1 2 datasets
ChIP HCT-116 ENCSR000BTE.FOSL1.HCT-116 158 bp overlap
ChIP HCT116 ENCFF540ZXN 274 bp overlap
FOXA1 4 datasets
ChIP PDAC GSE64557.FOXA1.PDAC 475 bp overlap
ChIP PDAC_KOKLF5 GSE64557.FOXA1.PDAC_KOKLF5 433 bp overlap
ChIP PDAC_SHCTR GSE64557.FOXA1.PDAC_SHCTR 446 bp overlap
ChIP breast_tumor_Male_14 GSE104399.FOXA1.breast_tumor_Male_14 276 bp overlap
FOXA2 3 datasets
ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 317 bp overlap
ChIP DE DE-FOXA2-1 632 bp overlap
ChIP DE DE-FOXA2-2 685 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 607 bp overlap
ChIP DE DE-GATA4-2 685 bp overlap
ChIP foregut GSE117136.GATA4.foregut 532 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 431 bp overlap
GATA6 11 datasets
ChIP DE DE-GATA6-1 536 bp overlap
ChIP DE DE-GATA6-2 685 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 606 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 685 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 314 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 675 bp overlap
ChIP OACP4-C GSE132680.GATA6.OACP4-C 261 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 412 bp overlap
ChIP foregut GSE117136.GATA6.foregut 565 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 336 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 419 bp overlap
GRHL2 1 dataset
ChIP OVCA429 GSE71018.GRHL2.OVCA429 171 bp overlap
HNF4A 1 dataset
ChIP IM95 GSE114018.HNF4A.IM95 289 bp overlap
IRF1 1 dataset
ChIP PDAC GSE64557.IRF1.PDAC 424 bp overlap
IRF2 1 dataset
ChIP keratinocyte_DOX GSE135677.IRF2.keratinocyte_DOX 367 bp overlap
JUN 2 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 237 bp overlap
ChIP MCF10A-Er-Src_EtOH GSE115597.JUN.MCF10A-Er-Src_EtOH 181 bp overlap
JUNB 3 datasets
ChIP CFPAC-1 GSE119930.JUNB.CFPAC-1 224 bp overlap
ChIP MCF10A-Er-Src_EtOH GSE115597.JUNB.MCF10A-Er-Src_EtOH 203 bp overlap
ChIP keratinocyte_CTR GSE139685.JUNB.keratinocyte_CTR 132 bp overlap
JUND 2 datasets
ChIP Calu-3 GSE85401.JUND.Calu-3 137 bp overlap
ChIP PC-3 GSE29808.JUND.PC-3 203 bp overlap
KDM1A 1 dataset
ChIP keratinocyte_diff GSE57702.KDM1A.keratinocyte_diff 194 bp overlap
KLF4 1 dataset
ChIP PDAC GSE64557.KLF4.PDAC 227 bp overlap
KLF6 1 dataset
ChIP PDAC GSE64557.KLF6.PDAC 208 bp overlap
MAML1 1 dataset
ChIP SCC_4h GSE156486.MAML1.SCC_4h 378 bp overlap
MED1 2 datasets
ChIP RH4 GSE83726.MED1.RH4 173 bp overlap
ChIP SUM159PT_300nMJQ1_24h GSE87418.MED1.SUM159PT_300nMJQ1_24h 215 bp overlap
MYC 2 datasets
ChIP MCF-10A ENCSR000DOS.MYC.MCF-10A 147 bp overlap
ChIP MCF-10A ENCSR000DOM.MYC.MCF-10A 105 bp overlap
NFKB1 1 dataset
ChIP MCF10A-Er-Src_TAM GSE115597.NFKB1.MCF10A-Er-Src_TAM 200 bp overlap
NR1H2 2 datasets
ChIP HT29_GW3965_2H GSE77039.NR1H2.HT29_GW3965_2H 208 bp overlap
ChIP HT29_GW3965_48H GSE77039.NR1H2.HT29_GW3965_48H 148 bp overlap
NR3C1 1 dataset
ChIP breast_tumor_Male_1 GSE104399.NR3C1.breast_tumor_Male_1 152 bp overlap
NUTM1 1 dataset
ChIP NMC24335 GSE96775.NUTM1.NMC24335 326 bp overlap
PHIP 1 dataset
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 285 bp overlap
POLR2A 3 datasets
ChIP breast epithelium ENCFF045XXN 132 bp overlap
ChIP breast epithelium ENCFF065JSZ 238 bp overlap
ChIP vagina ENCFF305NWS 120 bp overlap
PPARG 3 datasets
ChIP HT29_ROSIG_2H GSE77039.PPARG.HT29_ROSIG_2H 333 bp overlap
ChIP HT29_ROSIG_48H GSE77039.PPARG.HT29_ROSIG_48H 353 bp overlap
ChIP OE33 GSE143195.PPARG.OE33 241 bp overlap
RBPJ 2 datasets
ChIP SCC_0h GSE156486.RBPJ.SCC_0h 338 bp overlap
ChIP SCC_4h GSE156486.RBPJ.SCC_4h 263 bp overlap
RELA 7 datasets
ChIP Detroit-562_LPS GSE91018.RELA.Detroit-562_LPS 335 bp overlap
ChIP Detroit-562_Pam2CSK4 GSE91018.RELA.Detroit-562_Pam2CSK4 199 bp overlap
ChIP Detroit-562_Poly-I GSE91018.RELA.Detroit-562_Poly-I 310 bp overlap
ChIP Detroit-562_TNFa GSE91018.RELA.Detroit-562_TNFa 275 bp overlap
ChIP Detroit-562_tri-DAP GSE91018.RELA.Detroit-562_tri-DAP 194 bp overlap
ChIP FaDu_LPS GSE132018.RELA.FaDu_LPS 374 bp overlap
ChIP LNCaP_SIFOXA1_TNFA GSE83860.RELA.LNCaP_SIFOXA1_TNFA 235 bp overlap
RUNX1 1 dataset
ChIP epididymis_HEE GSE109061.RUNX1.epididymis_HEE 187 bp overlap
RUVBL2 1 dataset
ChIP U2OS_DMSO GSE130507.RUVBL2.U2OS_DMSO 168 bp overlap
SCRT2 1 dataset
ChIP HEK293 ENCFF711QQB 289 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 470 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 152 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 415 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 457 bp overlap
SMAD3 4 datasets
ChIP HCC1954 GSE104760.SMAD3.HCC1954 318 bp overlap
ChIP HMLE_Doxycicline_TGFb GSE104760.SMAD3.HMLE_Doxycicline_TGFb 193 bp overlap
ChIP NCI-H441 GSE51509.SMAD3.NCI-H441 437 bp overlap
ChIP NCI-H441_SIITTF1 GSE51509.SMAD3.NCI-H441_SIITTF1 502 bp overlap
SMC1 1 dataset
ChIP HMEC-1 GSE101921.SMC1.HMEC-1 251 bp overlap
SMC1A 1 dataset
ChIP primary-epidermal-keratinocyte GSE85526.SMC1A.primary-epidermal-keratinocyte 222 bp overlap
SNAI2 1 dataset
ChIP keratinocyte_LacZ GSE55421.SNAI2.keratinocyte_LacZ 190 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 561 bp overlap
SOX2 1 dataset
ChIP TT GSE46837.SOX2.TT 133 bp overlap
SPI1 2 datasets
ChIP K-562 GSE70482.SPI1.K-562 151 bp overlap
ChIP primary-neutrophil_donorF GSE128834.SPI1.primary-neutrophil_donorF 145 bp overlap
STAG2 1 dataset
ChIP HMEC-1 GSE101921.STAG2.HMEC-1 222 bp overlap
STAT3 13 datasets
ChIP A-137 GSE85579.STAT3.A-137 194 bp overlap
ChIP FaDu_DMSO GSE78212.STAT3.FaDu_DMSO 225 bp overlap
ChIP HCC1143_EtOH GSE85579.STAT3.HCC1143_EtOH 330 bp overlap
ChIP HCC1187 GSE152203.STAT3.HCC1187 175 bp overlap
ChIP HCC70 GSE152203.STAT3.HCC70 203 bp overlap
ChIP HCC70_EtOH GSE85579.STAT3.HCC70_EtOH 300 bp overlap
ChIP MCF-10A ENCSR000DOQ.STAT3.MCF-10A 351 bp overlap
ChIP MCF-10A ENCSR000DOZ.STAT3.MCF-10A 299 bp overlap
ChIP MCF10A-Er-Src_EtOH GSE115597.STAT3.MCF10A-Er-Src_EtOH 297 bp overlap
ChIP MCF10A-Er-Src_TAM GSE115597.STAT3.MCF10A-Er-Src_TAM 228 bp overlap
ChIP MDA-MB-231_EtOH GSE85579.STAT3.MDA-MB-231_EtOH 254 bp overlap
ChIP MDA-MB-468_EtOH GSE85579.STAT3.MDA-MB-468_EtOH 339 bp overlap
ChIP NCI-H358 GSE79707.STAT3.NCI-H358 222 bp overlap
TEAD1 1 dataset
ChIP keratinocyte GSE138727.TEAD1.keratinocyte 532 bp overlap
TP53 1 dataset
ChIP MCF-10A_Nutlin3A GSE111009.TP53.MCF-10A_Nutlin3A 238 bp overlap
TP63 8 datasets
ChIP JHU-029 GSE88859.TP63.JHU-029 212 bp overlap
ChIP MCF-10A_DCIS GSE72009.TP63.MCF-10A_DCIS 178 bp overlap
ChIP MCF-10A_Nutlin3A GSE111009.TP63.MCF-10A_Nutlin3A 380 bp overlap
ChIP SUIT-2 GSE115461.TP63.SUIT-2 211 bp overlap
ChIP keratinocyte GSE56674.TP63.keratinocyte 163 bp overlap
ChIP keratinocyte_CISP GSE56674.TP63.keratinocyte_CISP 141 bp overlap
ChIP keratinocyte_D0 GSE59824.TP63.keratinocyte_D0 218 bp overlap
ChIP keratinocyte_epidermal GSE67382.TP63.keratinocyte_epidermal 178 bp overlap
YY1 2 datasets
ChIP HCT-116 ENCSR000BNX.YY1.HCT-116 181 bp overlap
ChIP HCT116 ENCFF497ZQZ 214 bp overlap