chr12 : 38,544,415 – 38,544,963
548 bp 58 TFs 0 linked genes
This 548 bp open chromatin element has no linked target genes and is bound by 58 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:38,539,415 – 38,549,963
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
58 transcription factors
Source
Cell type
ASH2L 3 datasets
ChIP H1 ENCFF399KAM 548 bp overlap
ChIP H1 ENCFF399KAM 494 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 494 bp overlap
BRD2 2 datasets
ChIP MM1-S GSE43743.BRD2.MM1-S 225 bp overlap
ChIP SUM159PT_MGSK2801 GSE116879.BRD2.SUM159PT_MGSK2801 191 bp overlap
BRD3 2 datasets
ChIP H-1_DE GSE126661.BRD3.H-1_DE 387 bp overlap
ChIP MM1-S GSE43743.BRD3.MM1-S 111 bp overlap
BRD4 12 datasets
ChIP MM1-S GSE45984.BRD4.MM1-S 548 bp overlap
ChIP MM1-S_DMSO GSE42161.BRD4.MM1-S_DMSO 175 bp overlap
ChIP MM1-S_JQ1_150NM GSE49224.BRD4.MM1-S_JQ1_150NM 313 bp overlap
ChIP MM1-S_JQ1_500NM GSE42355.BRD4.MM1-S_JQ1_500NM 174 bp overlap
ChIP MM1-S_JQ1_50NM GSE42355.BRD4.MM1-S_JQ1_50NM 151 bp overlap
ChIP MM1-S_JQ1_5NM GSE42355.BRD4.MM1-S_JQ1_5NM 165 bp overlap
ChIP MM1-S_JQ1_5NM GSE42355.BRD4.MM1-S_JQ1_5NM 228 bp overlap
ChIP MM1-S_JQ1_5UM GSE42355.BRD4.MM1-S_JQ1_5UM 121 bp overlap
ChIP MV4-11_IBET_SGC GSE71776.BRD4.MV4-11_IBET_SGC 187 bp overlap
ChIP MV4-11_SGC GSE71776.BRD4.MV4-11_SGC 178 bp overlap
ChIP SUM159PT_KO GSE131097.BRD4.SUM159PT_KO 343 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 429 bp overlap
CDK9 2 datasets
ChIP MM1-S_JQ1_5000NM GSE49224.CDK9.MM1-S_JQ1_5000NM 76 bp overlap
ChIP MM1-S_JQ1_500NM GSE42355.CDK9.MM1-S_JQ1_500NM 131 bp overlap
CEBPB 1 dataset
ChIP THP-1_eGFP-Pam3csk-4h GSE103477.CEBPB.THP-1_eGFP-Pam3csk-4h 112 bp overlap
CTCF 320 datasets
ChIP 22Rv1 ENCFF466OXN 190 bp overlap
ChIP 22Rv1 ENCSR857PBV.CTCF.22Rv1 362 bp overlap
ChIP 22Rv1_hydroxy_10nM_4h ENCSR847XGE.CTCF.22Rv1_hydroxy_10nM_4h 398 bp overlap
ChIP 786-O_NORMOXIA GSE78113.CTCF.786-O_NORMOXIA 256 bp overlap
ChIP 81-3 ERP002246.CTCF.81-3 116 bp overlap
ChIP A-549 ENCSR000AUF.CTCF.A-549 345 bp overlap
ChIP A-549 ENCSR000AUE.CTCF.A-549 308 bp overlap
ChIP A-549 ENCSR000DPF.CTCF.A-549 253 bp overlap
ChIP A-549 ENCSR000DNA.CTCF.A-549 194 bp overlap
ChIP A-673 ENCSR611JJS.CTCF.A-673 243 bp overlap
ChIP A549 ENCFF182TCQ 205 bp overlap
ChIP A549 ENCFF434LUY 211 bp overlap
ChIP A549 ENCFF669BWC 393 bp overlap
ChIP A673 ENCFF123WOM 295 bp overlap
ChIP BC-3 GSE135740.CTCF.BC-3 225 bp overlap
ChIP BE2C ENCFF757SRF 152 bp overlap
ChIP BE2C ENCSR000DQD.CTCF.BE2C 269 bp overlap
ChIP C4-2B ENCFF821XVN 337 bp overlap
ChIP C4-2B ENCFF821XVN 264 bp overlap
ChIP CHRF28811 ERP008568.CTCF.CHRF28811 129 bp overlap
ChIP COLO-829 GSE81945.CTCF.COLO-829 263 bp overlap
ChIP Caco-2 ENCFF934QYS 171 bp overlap
ChIP Caco-2 ENCSR000DQN.CTCF.Caco-2 102 bp overlap
ChIP D54 ENCSR000DKN.CTCF.D54 224 bp overlap
ChIP D721Med ENCFF513FYD 158 bp overlap
Motif DE_12h DE_12h-CTCF_MA0139.2 15 bp overlap
ChIP DOHH2 ENCSR084RDK.CTCF.DOHH2 304 bp overlap
ChIP DU145 GSE121021.CTCF.DU145 184 bp overlap
ChIP FT282 GSE131931.CTCF.FT282 184 bp overlap
ChIP FT282_EV GSE131931.CTCF.FT282_EV 195 bp overlap
ChIP GM04025_B-lymphocytes GSE111170.CTCF.GM04025_B-lymphocytes 225 bp overlap
ChIP GM04604 GSE148179.CTCF.GM04604 250 bp overlap
ChIP GM04648 GSE148179.CTCF.GM04648 415 bp overlap
ChIP GM06077 GSE148179.CTCF.GM06077 219 bp overlap
ChIP GM06990 ENCFF471OQT 248 bp overlap
ChIP GM06990 ENCSR000DQW.CTCF.GM06990 190 bp overlap
ChIP GM09236__B-lymphocytes GSE111170.CTCF.GM09236__B-lymphocytes 138 bp overlap
ChIP GM09237_B-lymphocytes GSE111170.CTCF.GM09237_B-lymphocytes 290 bp overlap
ChIP GM12865 ENCFF067GFI 237 bp overlap
ChIP GM12866 ENCSR000DRF.CTCF.GM12866 133 bp overlap
ChIP GM12867 ENCSR000DRH.CTCF.GM12867 98 bp overlap
ChIP GM12868 ENCSR000DRI.CTCF.GM12868 115 bp overlap
ChIP GM12869 ENCSR000DRJ.CTCF.GM12869 168 bp overlap
ChIP GM12871 ENCSR000DRL.CTCF.GM12871 135 bp overlap
ChIP GM12872 ENCFF697BYI 214 bp overlap
ChIP GM12872 ENCSR000DRN.CTCF.GM12872 126 bp overlap
ChIP GM12873 ENCSR000DRP.CTCF.GM12873 195 bp overlap
ChIP GM12874 ENCFF942MTD 248 bp overlap
ChIP GM12874 ENCSR000DRR.CTCF.GM12874 156 bp overlap
ChIP GM12875 ENCFF081UCQ 184 bp overlap
ChIP GM12875 ENCSR000DRU.CTCF.GM12875 140 bp overlap
ChIP GM12878 ENCFF485TGR 202 bp overlap
ChIP GM12878 ENCFF511URZ 174 bp overlap
ChIP GM12878 ENCFF635MMB 207 bp overlap
ChIP GM12878 GSE76922.CTCF.GM12878 283 bp overlap
ChIP GM12878 ENCSR000DKV.CTCF.GM12878 159 bp overlap
ChIP GM12878 ENCSR000DZN.CTCF.GM12878 123 bp overlap
ChIP GM13976 ENCFF896BYT 150 bp overlap
ChIP GM17942 GSE76922.CTCF.GM17942 266 bp overlap
ChIP GM23338 ENCFF531QOI 241 bp overlap
ChIP GM23338 ENCFF772DML 181 bp overlap
ChIP H1 ENCFF230QSV 165 bp overlap
ChIP H1 ENCFF414GZI 203 bp overlap
ChIP H1 ENCFF764RHO 188 bp overlap
ChIP H54 ENCFF255TVO 219 bp overlap
ChIP H9 ENCFF152GTF 272 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 261 bp overlap
ChIP HAP1 GSE94992.CTCF.HAP1 213 bp overlap
ChIP HAP1_2kb GSE152721.CTCF.HAP1_2kb 275 bp overlap
ChIP HAP1_SCC4KO GSE94992.CTCF.HAP1_SCC4KO 262 bp overlap
ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 252 bp overlap
ChIP HAP1_WaplKO-33 GSE94992.CTCF.HAP1_WaplKO-33 225 bp overlap
ChIP HAP1_WaplKO-33_SCC4KO GSE94992.CTCF.HAP1_WaplKO-33_SCC4KO 242 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 284 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 414 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 256 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 360 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 379 bp overlap
ChIP HAP1_clone25 GSE152721.CTCF.HAP1_clone25 263 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 548 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 357 bp overlap
ChIP HCT-116 ENCSR000DTO.CTCF.HCT-116 228 bp overlap
ChIP HCT-116 GSE92879.CTCF.HCT-116 221 bp overlap
ChIP HCT-116 ENCSR000BSE.CTCF.HCT-116 146 bp overlap
ChIP HCT-116_RAD21-mAC GSE104888.CTCF.HCT-116_RAD21-mAC 247 bp overlap
ChIP HCT-116_RAD21-mAC_500uM_auxin GSE104888.CTCF.HCT-116_RAD21-mAC_500uM_auxin 217 bp overlap
ChIP HCT116 ENCFF003KHP 200 bp overlap
ChIP HCT116 ENCFF209YMI 208 bp overlap
ChIP HEC-1-B_F-insertion GSE140868.CTCF.HEC-1-B_F-insertion 75 bp overlap
ChIP HEC-1-B_R1-insertion GSE140868.CTCF.HEC-1-B_R1-insertion 103 bp overlap
ChIP HEC-1-B_RF-insertion GSE140868.CTCF.HEC-1-B_RF-insertion 114 bp overlap
ChIP HEC-1-B_RF-mutation GSE140868.CTCF.HEC-1-B_RF-mutation 188 bp overlap
ChIP HEC-1-B_WT GSE140868.CTCF.HEC-1-B_WT 158 bp overlap
ChIP HEC-1-B_a12-CBS-deletion GSE140868.CTCF.HEC-1-B_a12-CBS-deletion 91 bp overlap
ChIP HEK293 ENCFF498RMM 225 bp overlap
ChIP HEK293 ENCSR000DTW.CTCF.HEK293 212 bp overlap
ChIP HEK293T GSE115862.CTCF.HEK293T 275 bp overlap
ChIP HL-60 GSE131577.CTCF.HL-60 113 bp overlap
ChIP HL-60 GSE131577.CTCF.HL-60 175 bp overlap
ChIP HMS001 GSE143026.CTCF.HMS001 97 bp overlap
ChIP HT-1080 GSE135580.CTCF.HT-1080 423 bp overlap
ChIP HT-1080_CBL0137-6h GSE122462.CTCF.HT-1080_CBL0137-6h 442 bp overlap
ChIP HUDEP-2_30min GSE104676.CTCF.HUDEP-2_30min 63 bp overlap
ChIP HUES-64 GSE97394.CTCF.HUES-64 182 bp overlap
ChIP HUES-64_DNMT-KO GSE97394.CTCF.HUES-64_DNMT-KO 230 bp overlap
ChIP HeLa GSE126990.CTCF.HeLa 236 bp overlap
ChIP HeLa-Kyoto GSE102884.CTCF.HeLa-Kyoto 241 bp overlap
ChIP HeLa-Kyoto GSE138405.CTCF.HeLa-Kyoto 236 bp overlap
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.CTCF.HeLa-Kyoto_PDS5-depleted 267 bp overlap
ChIP HeLa-Kyoto_WAPL-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL-depleted 235 bp overlap
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL_PDS-depleted 268 bp overlap
ChIP HeLa-S3 ENCFF565UFR 161 bp overlap
ChIP HeLa-S3 ENCFF626XQK 227 bp overlap
ChIP HeLa-S3 ENCSR000AOA.CTCF.HeLa-S3 244 bp overlap
ChIP HeLa-S3 ENCSR000DUB.CTCF.HeLa-S3 176 bp overlap
ChIP HeLa-S3 ENCSR000DLO.CTCF.HeLa-S3 136 bp overlap
ChIP HeLa-S3_biotin GSE108869.CTCF.HeLa-S3_biotin 214 bp overlap
ChIP HeLa-S3_shCtrl GSE137848.CTCF.HeLa-S3_shCtrl 239 bp overlap
ChIP HeLa-S3_synchro GSE108173.CTCF.HeLa-S3_synchro 192 bp overlap
ChIP HeLa-S3_unsynchro GSE108173.CTCF.HeLa-S3_unsynchro 243 bp overlap
ChIP HeLa_dC9Sun-D3AMut_MIR152 GSE107607.CTCF.HeLa_dC9Sun-D3AMut_MIR152 121 bp overlap
ChIP HeLa_dC9Sun-D3A_CDCC85C GSE107607.CTCF.HeLa_dC9Sun-D3A_CDCC85C 164 bp overlap
ChIP HeLa_dC9Sun-D3A_MIR152 GSE107607.CTCF.HeLa_dC9Sun-D3A_MIR152 186 bp overlap
ChIP HeLa_dC9Sun-D3A_SHB GSE107607.CTCF.HeLa_dC9Sun-D3A_SHB 185 bp overlap
ChIP Hep-G2 ENCSR000DUG.CTCF.Hep-G2 187 bp overlap
ChIP Hep-G2 ENCSR000AMA.CTCF.Hep-G2 153 bp overlap
ChIP Hep-G2 ERP000209.CTCF.Hep-G2 162 bp overlap
ChIP Hep-G2 ENCSR000DLS.CTCF.Hep-G2 128 bp overlap
ChIP Hep-G2 ENCSR000BIE.CTCF.Hep-G2 115 bp overlap
ChIP HepG2 ENCFF127KUP 191 bp overlap
ChIP HepG2 ENCFF348BUL 177 bp overlap
ChIP HepG2 ENCFF668CTD 145 bp overlap
ChIP ID00014 GSE76922.CTCF.ID00014 289 bp overlap
ChIP ID00016 GSE76922.CTCF.ID00016 250 bp overlap
ChIP Jurkat GSE68976.CTCF.Jurkat 195 bp overlap
ChIP Jurkat GSE130140.CTCF.Jurkat 140 bp overlap
ChIP K-562 GSE70482.CTCF.K-562 202 bp overlap
ChIP K-562_11698 GSE131349.CTCF.K-562_11698 177 bp overlap
ChIP K-562_12040 GSE131349.CTCF.K-562_12040 177 bp overlap
ChIP K-562_13004 GSE131349.CTCF.K-562_13004 195 bp overlap
ChIP K-562_13189 GSE131349.CTCF.K-562_13189 158 bp overlap
ChIP K-562_14259 GSE131349.CTCF.K-562_14259 162 bp overlap
ChIP K-562_14376 GSE131349.CTCF.K-562_14376 169 bp overlap
ChIP K-562_15173 GSE131349.CTCF.K-562_15173 151 bp overlap
ChIP K-562_15776 GSE131349.CTCF.K-562_15776 174 bp overlap
ChIP K-562_7140 GSE131349.CTCF.K-562_7140 182 bp overlap
ChIP K-562_8005 GSE131349.CTCF.K-562_8005 205 bp overlap
ChIP K-562_CRISPRa_N4293 GSE131349.CTCF.K-562_CRISPRa_N4293 182 bp overlap
ChIP K-562_CRISPRk_N4293 GSE131349.CTCF.K-562_CRISPRk_N4293 99 bp overlap
ChIP K-562_MonoC GSE137216.CTCF.K-562_MonoC 313 bp overlap
ChIP K-562_RF2-insertion GSE140868.CTCF.K-562_RF2-insertion 111 bp overlap
ChIP K-562_dCas9-KRAB GSE132212.CTCF.K-562_dCas9-KRAB 251 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.CTCF.K-562_dCas9-LSD1 229 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.CTCF.K-562_enCRISPRi-KL 121 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.CTCF.K-562_enCRISPRi-LK 228 bp overlap
ChIP KARPAS422 ENCSR113REG.CTCF.KARPAS422 183 bp overlap
ChIP KB_5Z GSE134435.CTCF.KB_5Z 101 bp overlap
ChIP KB_IL-1_5Z GSE134435.CTCF.KB_IL-1_5Z 141 bp overlap
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 172 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.CTCF.Kelly_resistant_JQ1 191 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 224 bp overlap
ChIP Kelly_shB4-res GSE115248.CTCF.Kelly_shB4-res 148 bp overlap
ChIP Kelly_shLUC-res GSE115248.CTCF.Kelly_shLUC-res 155 bp overlap
ChIP LNCaP ENCSR315NAC.CTCF.LNCaP 229 bp overlap
ChIP LNCaP clone FGC ENCFF519YVI 174 bp overlap
ChIP LNCaP clone FGC ENCFF957KCI 174 bp overlap
ChIP LNCaP-C4-2B ENCSR460LGH.CTCF.LNCaP-C4-2B 363 bp overlap
ChIP MCF-10A GSE98551.CTCF.MCF-10A 237 bp overlap
ChIP MCF-10AT1 GSE98551.CTCF.MCF-10AT1 260 bp overlap
ChIP MCF-7 ENCFF139NQI 214 bp overlap
ChIP MCF-7 ENCFF198DQX 211 bp overlap
ChIP MCF-7 ENCFF494VXA 211 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 260 bp overlap
ChIP MCF-7 GSE137216.CTCF.MCF-7 243 bp overlap
ChIP MCF-7 ENCSR000DWH.CTCF.MCF-7 205 bp overlap
ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 136 bp overlap
ChIP MCF-7 ENCSR000DMS.CTCF.MCF-7 121 bp overlap
ChIP MCF-7 GSE70764.CTCF.MCF-7 93 bp overlap
ChIP MCF-7L_t0 GSE108787.CTCF.MCF-7L_t0 247 bp overlap
ChIP MCF-7L_t1 GSE108787.CTCF.MCF-7L_t1 242 bp overlap
ChIP MCF-7L_t16 GSE108787.CTCF.MCF-7L_t16 193 bp overlap
ChIP MCF-7L_t24 GSE108787.CTCF.MCF-7L_t24 194 bp overlap
ChIP MCF-7_E2_SHCTCF ERP000209.CTCF.MCF-7_E2_SHCTCF 96 bp overlap
ChIP MCF-7_HYPOXIA GSE78113.CTCF.MCF-7_HYPOXIA 219 bp overlap
ChIP MCF-7_NORMOXIA GSE78113.CTCF.MCF-7_NORMOXIA 237 bp overlap
ChIP MDA-MB-435_Asynchronous GSE102019.CTCF.MDA-MB-435_Asynchronous 298 bp overlap
ChIP MM.1S ENCFF869JMQ 250 bp overlap
ChIP MM1-S ENCSR402IDP.CTCF.MM1-S 519 bp overlap
ChIP MM1-S GSE43743.CTCF.MM1-S 232 bp overlap
ChIP NB4 ENCFF155DNY 206 bp overlap
ChIP NB4 ENCSR000DWN.CTCF.NB4 199 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 174 bp overlap
ChIP NCI-H929 ENCFF305JAB 268 bp overlap
ChIP NCI-H929 ENCSR634OAQ.CTCF.NCI-H929 494 bp overlap
ChIP NPC GSE115407.CTCF.NPC 276 bp overlap
ChIP OCI-LY1 ENCFF455ESK 309 bp overlap
ChIP OCI-LY7 ENCFF086AXQ 337 bp overlap
ChIP OCI-Ly1 ENCSR072EUE.CTCF.OCI-Ly1 293 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 303 bp overlap
ChIP OCI-Ly7 ENCSR027HML.CTCF.OCI-Ly7 205 bp overlap
ChIP OVCAR-8 GSE70764.CTCF.OVCAR-8 191 bp overlap
ChIP PANC-1 ENCSR203QEB.CTCF.PANC-1 308 bp overlap
ChIP PC-3 ENCFF487TUI 147 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 297 bp overlap
ChIP Panc1 ENCFF056JQX 353 bp overlap
ChIP RH4 GSE83726.CTCF.RH4 186 bp overlap
ChIP RWPE-2 ENCSR856JJB.CTCF.RWPE-2 193 bp overlap
ChIP RWPE2 ENCFF911IEE 416 bp overlap
ChIP SH-SY5Y GSE101295.CTCF.SH-SY5Y 143 bp overlap
ChIP SK-MEL-147 GSE94488.CTCF.SK-MEL-147 160 bp overlap
ChIP SK-N-AS GSE101295.CTCF.SK-N-AS 143 bp overlap
ChIP SK-N-SH ENCFF575DMG 213 bp overlap
ChIP SK-N-SH ENCFF575DMG 130 bp overlap
ChIP SK-N-SH ENCFF731NJX 242 bp overlap
ChIP SK-N-SH ENCSR541AMF.CTCF.SK-N-SH 273 bp overlap
ChIP SK-N-SH ENCSR000EIC.CTCF.SK-N-SH 183 bp overlap
ChIP SK-N-SH ENCSR000DXQ.CTCF.SK-N-SH 170 bp overlap
ChIP SK-N-SH GSE76815.CTCF.SK-N-SH 161 bp overlap
ChIP SK-N-SH ENCSR000BLX.CTCF.SK-N-SH 147 bp overlap
ChIP SU-DHL-6 ENCFF116KKR 391 bp overlap
ChIP T-47D GSE111923.CTCF.T-47D 230 bp overlap
ChIP T-47D_NaCl-1h GSE111923.CTCF.T-47D_NaCl-1h 223 bp overlap
ChIP T-47D_NaCl-isotonic-triptolide GSE111923.CTCF.T-47D_NaCl-isotonic-triptolide 483 bp overlap
ChIP THP-1_2D3 GSE69962.CTCF.THP-1_2D3 193 bp overlap
ChIP THP-1_PMA_Dex-0h GSE103477.CTCF.THP-1_PMA_Dex-0h 240 bp overlap
ChIP THP-1_PMA_Dex-6h GSE103477.CTCF.THP-1_PMA_Dex-6h 217 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-000m 280 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-240m 273 bp overlap
ChIP THP-1_Pam3csk-020m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-020m-Flavo-000m 259 bp overlap
ChIP THP-1_Pam3csk-025m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-025m-Flavo-000m 341 bp overlap
ChIP THP-1_Pam3csk-030m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-030m-Flavo-000m 342 bp overlap
ChIP THP-1_Pam3csk-045m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-045m-Flavo-000m 395 bp overlap
ChIP THP-1_Pam3csk-060m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-060m-Flavo-000m 264 bp overlap
ChIP THP-1_Pam3csk-120m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-120m-Flavo-000m 316 bp overlap
ChIP THP-1_Pam3csk-150m-Flavo-030m GSE103477.CTCF.THP-1_Pam3csk-150m-Flavo-030m 303 bp overlap
ChIP THP-1_Pam3csk-180m-Flavo-060m GSE103477.CTCF.THP-1_Pam3csk-180m-Flavo-060m 262 bp overlap
ChIP THP-1_Pam3csk-360m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-360m-Flavo-240m 281 bp overlap
ChIP THP-1_macrophage_PMA GSE96800.CTCF.THP-1_macrophage_PMA 218 bp overlap
ChIP THP-1_siCtrl-NS1-Pam3csk-0h GSE103477.CTCF.THP-1_siCtrl-NS1-Pam3csk-0h 280 bp overlap
ChIP THP-1_siCtrl-NS1-Pam3csk-4h GSE103477.CTCF.THP-1_siCtrl-NS1-Pam3csk-4h 349 bp overlap
ChIP THP-1_siCtrl-NS1-Pam3csk-7h-Flavo-3h GSE103477.CTCF.THP-1_siCtrl-NS1-Pam3csk-7h-Flavo-3h 216 bp overlap
ChIP THP-1_siCtrl-eGFP-Pam3csk-0h GSE103477.CTCF.THP-1_siCtrl-eGFP-Pam3csk-0h 219 bp overlap
ChIP THP-1_siCtrl-eGFP-Pam3csk-4h GSE103477.CTCF.THP-1_siCtrl-eGFP-Pam3csk-4h 241 bp overlap
ChIP THP-1_siNIPBL-NS1-Pam3csk-4h GSE103477.CTCF.THP-1_siNIPBL-NS1-Pam3csk-4h 196 bp overlap
ChIP THP-1_siNIPBL-NS1-Pam3csk-7h-Flavo-3h GSE103477.CTCF.THP-1_siNIPBL-NS1-Pam3csk-7h-Flavo-3h 236 bp overlap
ChIP THP-1_siNIPBL-eGFP-Pam3csk-4h GSE103477.CTCF.THP-1_siNIPBL-eGFP-Pam3csk-4h 183 bp overlap
ChIP THP-1_siWAPL-NS1-Pam3csk-4h GSE103477.CTCF.THP-1_siWAPL-NS1-Pam3csk-4h 261 bp overlap
ChIP THP-1_siWAPL-eGFP-Pam3csk-4h GSE103477.CTCF.THP-1_siWAPL-eGFP-Pam3csk-4h 233 bp overlap
ChIP U2OS_ana-telopphase GSE141081.CTCF.U2OS_ana-telopphase 196 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 171 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 131 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 208 bp overlap
ChIP WERI-Rb-1 ENCFF349QKF 194 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 198 bp overlap
ChIP ZR751 ERP000783.CTCF.ZR751 179 bp overlap
ChIP bonchial_epithelial ENCSR000DXI.CTCF.bonchial_epithelial 205 bp overlap
ChIP bronchial epithelial cell ENCFF500SEA 258 bp overlap
ChIP cardiac-muscle ENCSR713SXF.CTCF.cardiac-muscle 170 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-neg 230 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-pos 171 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-neg 160 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-pos 175 bp overlap
ChIP delta-47 GSE70764.CTCF.delta-47 223 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF282ONV 284 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF835ZSJ 345 bp overlap
ChIP endodermal cell ENCFF471YCZ 262 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 412 bp overlap
ChIP epithelial cell of proximal tubule ENCFF763ZKS 249 bp overlap
ChIP epithelial_kidney ENCSR000DVH.CTCF.epithelial_kidney 170 bp overlap
ChIP epithelial_proximal_tubule ENCSR000DXD.CTCF.epithelial_proximal_tubule 196 bp overlap
ChIP erythroblast_adult_erythroblasts GSE102184.CTCF.erythroblast_adult_erythroblasts 212 bp overlap
ChIP erythroid_Don001 GSE137982.CTCF.erythroid_Don001 246 bp overlap
ChIP esophagus-muscularis-mucosa ENCSR073TPC.CTCF.esophagus-muscularis-mucosa 335 bp overlap
ChIP fetal_erythroblasts GSE102184.CTCF.fetal_erythroblasts 148 bp overlap
ChIP gastroesophageal-sphincter ENCSR298ZPF.CTCF.gastroesophageal-sphincter 190 bp overlap
ChIP hESC GSE20650.CTCF.hESC 109 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 218 bp overlap
ChIP hESC_D15 GSE116862.CTCF.hESC_D15 229 bp overlap
ChIP hESC_D2 GSE116862.CTCF.hESC_D2 216 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 505 bp overlap
ChIP hESC_D7 GSE116862.CTCF.hESC_D7 107 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 296 bp overlap
ChIP hESC_PRIMED GSE69646.CTCF.hESC_PRIMED 276 bp overlap
ChIP hiPSC GSE115407.CTCF.hiPSC 450 bp overlap
ChIP hiPSC_Angelman GSE117283.CTCF.hiPSC_Angelman 203 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 186 bp overlap
ChIP hiPSC_HUES9 GSE106870.CTCF.hiPSC_HUES9 183 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 209 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 188 bp overlap
ChIP hiPSC_IIA11 GSE106870.CTCF.hiPSC_IIA11 219 bp overlap
ChIP hiPSC_IID12 GSE106870.CTCF.hiPSC_IID12 225 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 191 bp overlap
ChIP hiPSC_Prader-Willi GSE117283.CTCF.hiPSC_Prader-Willi 198 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.CTCF.hiPSC_failed-genome-editing 231 bp overlap
ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 228 bp overlap
ChIP islet ERP004003.CTCF.islet 149 bp overlap
ChIP keratinocyte ENCSR000DWX.CTCF.keratinocyte 134 bp overlap
ChIP keratinocyte ENCSR000DNC.CTCF.keratinocyte 116 bp overlap
ChIP leukemia GSE142161.CTCF.leukemia 210 bp overlap
ChIP leukemia_CEBPA-24h GSE142161.CTCF.leukemia_CEBPA-24h 144 bp overlap
ChIP leukemia_CEBPA-96h GSE142161.CTCF.leukemia_CEBPA-96h 250 bp overlap
ChIP mammary epithelial cell ENCFF873ERE 224 bp overlap
ChIP nephron progenitor cell ENCFF455DMI 337 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 271 bp overlap
ChIP neural cell ENCFF335ADI 350 bp overlap
ChIP neural progenitor cell ENCFF420RBO 245 bp overlap
ChIP neural progenitor cell ENCFF581WPG 393 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 310 bp overlap
ChIP neuroblastoma GSE115862.CTCF.neuroblastoma 284 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 164 bp overlap
ChIP placenta ENCFF029PHY 299 bp overlap
ChIP primary-glioblastoma_G523 GSE121601.CTCF.primary-glioblastoma_G523 218 bp overlap
ChIP primary-glioblastoma_G567 GSE121601.CTCF.primary-glioblastoma_G567 164 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 300 bp overlap
ChIP progenitor cell of endocrine pancreas ENCFF492KHV 282 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 234 bp overlap
ChIP smooth-muscle-cell ENCSR261VAS.CTCF.smooth-muscle-cell 126 bp overlap
ChIP testis ENCSR753RME.CTCF.testis 238 bp overlap
ChIP thyroid-gland ENCSR033KMZ.CTCF.thyroid-gland 268 bp overlap
ChIP type B pancreatic cell ENCFF910FNQ 327 bp overlap
CTCFL 5 datasets
Motif DE_12h DE_12h-CTCFL_MA1102.3 8 bp overlap
ChIP Kelly_resistant GSE103030.CTCFL.Kelly_resistant 152 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.CTCFL.Kelly_resistant_JQ1 174 bp overlap
ChIP Kelly_shLUC-res GSE115248.CTCFL.Kelly_shLUC-res 190 bp overlap
ChIP delta-47 GSE70764.CTCFL.delta-47 207 bp overlap
ERG 1 dataset
ChIP VCaP GSE49091.ERG.VCaP 135 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-1 266 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 174 bp overlap
GABPA 1 dataset
ChIP VCaP GSE49091.GABPA.VCaP 145 bp overlap
GATA3 1 dataset
ChIP T-47D GSE51274.GATA3.T-47D 196 bp overlap
GATA3_Nter 2 datasets
ChIP T-47D_CR3flp GSE99479.GATA3_Nter.T-47D_CR3flp 210 bp overlap
ChIP T-47D_flp-ctrl GSE99479.GATA3_Nter.T-47D_flp-ctrl 191 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 207 bp overlap
ChIP DE DE-GATA4-2 289 bp overlap
GATA6 3 datasets
ChIP DE DE-GATA6-1 285 bp overlap
ChIP DE DE-GATA6-2 211 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 380 bp overlap
JUN 1 dataset
ChIP ESC S34-ESC-d0-JUN-exp2 271 bp overlap
KDM4A 1 dataset
ChIP WA01 ENCSR000AVC.KDM4A.WA01 159 bp overlap
KLF13 1 dataset
Motif DE_12h DE_12h-KLF13_MA0657.2 17 bp overlap
MAX 1 dataset
ChIP WA01 ENCSR000EUP.MAX.WA01 138 bp overlap
MED1 4 datasets
ChIP MM1-S_JQ1 GSE42161.MED1.MM1-S_JQ1 548 bp overlap
ChIP MM1-S_JQ1_500NM GSE42355.MED1.MM1-S_JQ1_500NM 130 bp overlap
ChIP MM1-S_JQ1_50NM GSE49224.MED1.MM1-S_JQ1_50NM 109 bp overlap
ChIP MM1-S_JQ1_5NM GSE49224.MED1.MM1-S_JQ1_5NM 155 bp overlap
MYBL2 1 dataset
ChIP Hep-G2 ENCSR581KCO.MYBL2.Hep-G2 125 bp overlap
NANOG 3 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 548 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 548 bp overlap
ChIP hESC GSE18292.NANOG.hESC 167 bp overlap
NCOA1 1 dataset
ChIP MCF-7 ERP000901.NCOA1.MCF-7 128 bp overlap
NR3C1 3 datasets
ChIP A-549 ENCSR000BHF.NR3C1.A-549 116 bp overlap
ChIP A-549 ENCSR000BHE.NR3C1.A-549 127 bp overlap
ChIP SUM159PT GSE152203.NR3C1.SUM159PT 227 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 350 bp overlap
POU2F3 1 dataset
Motif DE_12h DE_12h-POU2F3_MA0627.3 9 bp overlap
POU5F1 5 datasets
Motif DE_12h DE_12h-POU5F1_MA1115.2 7 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 548 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 296 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 506 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 258 bp overlap
RAD21 18 datasets
ChIP GM12878 ENCSR000BMY.RAD21.GM12878 128 bp overlap
ChIP H1 ENCFF698EWO 215 bp overlap
ChIP H1 ENCFF967OJF 198 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 281 bp overlap
ChIP HAP1 GSE126634.RAD21.HAP1 228 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 450 bp overlap
ChIP HCT-116 GSE121355.RAD21.HCT-116 289 bp overlap
ChIP HEC-1-B_RF-insertion GSE140868.RAD21.HEC-1-B_RF-insertion 149 bp overlap
ChIP Ishikawa ENCFF570JVV 221 bp overlap
ChIP Ishikawa ENCSR000BTU.RAD21.Ishikawa 114 bp overlap
ChIP THP-1_Pam3csk-020m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-020m-Flavo-000m 166 bp overlap
ChIP THP-1_Pam3csk-025m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-025m-Flavo-000m 184 bp overlap
ChIP THP-1_Pam3csk-045m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-045m-Flavo-000m 219 bp overlap
ChIP THP-1_eGFP-IFNb GSE103477.RAD21.THP-1_eGFP-IFNb 304 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 193 bp overlap
ChIP hiPSC_IIIB12 GSE106870.RAD21.hiPSC_IIIB12 228 bp overlap
ChIP hiPSC_IV8 GSE106870.RAD21.hiPSC_IV8 175 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 127 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 195 bp overlap
RUNX1 2 datasets
ChIP MV4-11 GSE79899.RUNX1.MV4-11 105 bp overlap
ChIP THP-1 GSE79899.RUNX1.THP-1 249 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 548 bp overlap
SMAD2_3 1 dataset
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 201 bp overlap
SMAD3 2 datasets
ChIP BG03_DIFF_0H GSE36578.SMAD3.BG03_DIFF_0H 160 bp overlap
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 208 bp overlap
SMARCA4 1 dataset
ChIP hiPSC GSE124903.SMARCA4.hiPSC 259 bp overlap
SMARCC1 1 dataset
ChIP hiPSC GSE124903.SMARCC1.hiPSC 227 bp overlap
SMC1 2 datasets
ChIP HAP1_WaplKO-33_SCC4KO GSE94992.SMC1.HAP1_WaplKO-33_SCC4KO 223 bp overlap
ChIP HCT-116_RAD21-mAC GSE104888.SMC1.HCT-116_RAD21-mAC 150 bp overlap
SMC1A 1 dataset
ChIP A-549 GSE76893.SMC1A.A-549 156 bp overlap
SMC3 4 datasets
ChIP HeLa GSE126990.SMC3.HeLa 143 bp overlap
ChIP HeLa-Kyoto GSE102884.SMC3.HeLa-Kyoto 143 bp overlap
ChIP HeLa-Kyoto GSE138405.SMC3.HeLa-Kyoto 143 bp overlap
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.SMC3.HeLa-Kyoto_PDS5-depleted 196 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 369 bp overlap
SOX2 4 datasets
ChIP H9 GSE46837.SOX2.H9 161 bp overlap
ChIP hESC GSE18292.SOX2.hESC 100 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 285 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 191 bp overlap
SP1 1 dataset
Motif DE_12h DE_12h-SP1_MA0079.5 9 bp overlap
STAG1 2 datasets
ChIP HeLa GSE126990.STAG1.HeLa 224 bp overlap
ChIP HeLa-Kyoto GSE138405.STAG1.HeLa-Kyoto 224 bp overlap
STAG2 2 datasets
ChIP OCI-AML-3 GSE111537.STAG2.OCI-AML-3 99 bp overlap
ChIP OCI-AML-3 GSE111537.STAG2.OCI-AML-3 300 bp overlap
TAF1 1 dataset
ChIP WA01 ENCSR000BHO.TAF1.WA01 153 bp overlap
TBP 1 dataset
ChIP H1 ENCFF859IIO 265 bp overlap
TP53 1 dataset
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 239 bp overlap
YY1 3 datasets
ChIP H1 ENCFF524BTL 292 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 215 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 180 bp overlap
ZBTB2 2 datasets
ChIP GM12878 GSE97661.ZBTB2.GM12878 140 bp overlap
ChIP Hep-G2 GSE97661.ZBTB2.Hep-G2 118 bp overlap
ZIC1 1 dataset
Motif DE_12h DE_12h-ZIC1_MA0696.1 14 bp overlap
ZIC4 1 dataset
Motif DE_12h DE_12h-ZIC4_MA0751.2 14 bp overlap
ZIC5 1 dataset
Motif DE_12h DE_12h-ZIC5_MA1584.2 15 bp overlap
ZNF257 1 dataset
Motif DE_12h DE_12h-ZNF257_MA1710.2 10 bp overlap
ZNF462 1 dataset
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 170 bp overlap
ZNF528 1 dataset
ChIP HEK293 GSE76494.ZNF528.HEK293 303 bp overlap
ZNF667 1 dataset
Motif DE_12h DE_12h-ZNF667_MA1984.2 11 bp overlap
ZNF75D 1 dataset
Motif DE_12h DE_12h-ZNF75D_MA1601.2 12 bp overlap
ZNF768 1 dataset
Motif DE_12h DE_12h-ZNF768_MA1731.2 9 bp overlap
Huangfu Lab · Publications · Resources · Contact