chr11 : 48,127,687 48,128,434
747 bp 97 TFs 2 linked genes
This 747 bp open chromatin element is linked to PTPRJ and NUP160 and is bound by 97 transcription factors.
Linked Genes
2 genes
Link type
Gene Expression Dist. to TSS Distance Link type
PTPRJ 147.5 kb Distal Multiome+HiCAR
NUP160 279.9 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr11:48,122,687 – 48,133,434
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
97 transcription factors
Source
Cell type
ARID1A 2 datasets
ChIP RMG-I GSE104545.ARID1A.RMG-I 137 bp overlap
ChIP RMG-I GSE120058.ARID1A.RMG-I 89 bp overlap
ARNT 1 dataset
ChIP MCF-7_aza GSE85352.ARNT.MCF-7_aza 112 bp overlap
Ar 2 datasets
Motif DE_48h DE_48h-Ar_MA0007.4 16 bp overlap
Motif DE_60h DE_60h-Ar_MA0007.4 16 bp overlap
BCL3 1 dataset
ChIP GM12878 ENCSR000BNQ.BCL3.GM12878 134 bp overlap
BHLHE22 3 datasets
Motif DE_36h DE_36h-BHLHE22_MA1635.2 6 bp overlap
Motif DE_48h DE_48h-BHLHE22_MA1635.2 6 bp overlap
Motif DE_60h DE_60h-BHLHE22_MA1635.2 6 bp overlap
Bcl11B 3 datasets
Motif DE_36h DE_36h-Bcl11B_MA1989.2 9 bp overlap
Motif DE_48h DE_48h-Bcl11B_MA1989.2 9 bp overlap
Motif DE_60h DE_60h-Bcl11B_MA1989.2 9 bp overlap
Bhlha15 3 datasets
Motif DE_36h DE_36h-Bhlha15_MA1472.3 8 bp overlap
Motif DE_48h DE_48h-Bhlha15_MA1472.3 8 bp overlap
Motif DE_60h DE_60h-Bhlha15_MA1472.3 8 bp overlap
CDKN1B 1 dataset
ChIP MDA-MB-231 GSE112444.CDKN1B.MDA-MB-231 173 bp overlap
CHD4 1 dataset
ChIP pre-B-cell GSE107886.CHD4.pre-B-cell 141 bp overlap
CREB1 1 dataset
ChIP Hep-G2 ENCSR112ALD.CREB1.Hep-G2 198 bp overlap
CTCF 2 datasets
ChIP T-47D_NaCl-triptolide GSE111923.CTCF.T-47D_NaCl-triptolide 318 bp overlap
ChIP erythroid GSE67783.CTCF.erythroid 162 bp overlap
DMRT3 1 dataset
Motif DE_48h DE_48h-DMRT3_MA0610.2 7 bp overlap
DMRTA2 2 datasets
Motif DE_48h DE_48h-DMRTA2_MA1478.2 6 bp overlap
Motif DE_60h DE_60h-DMRTA2_MA1478.2 6 bp overlap
DMRTC2 1 dataset
Motif DE_48h DE_48h-DMRTC2_MA1479.2 11 bp overlap
DNMT3B 1 dataset
ChIP HUES-8_TripleKO-TET1-2-3 GSE99346.DNMT3B.HUES-8_TripleKO-TET1-2-3 313 bp overlap
Dmrt1 2 datasets
Motif DE_48h DE_48h-Dmrt1_MA1603.2 9 bp overlap
Motif DE_60h DE_60h-Dmrt1_MA1603.2 9 bp overlap
EOMES 3 datasets
Motif DE_48h DE_48h-EOMES_MA0800.2 9 bp overlap
Motif DE_60h DE_60h-EOMES_MA0800.2 9 bp overlap
ChIP hESC GSE26097.EOMES.hESC 270 bp overlap
EP300 1 dataset
ChIP 697 GSE138031.EP300.697 51 bp overlap
ERF::FIGLA 2 datasets
Motif DE_48h DE_48h-ERFFIGLA_MA1934.2 13 bp overlap
Motif DE_60h DE_60h-ERFFIGLA_MA1934.2 13 bp overlap
ESR1 19 datasets
ChIP Ishikawa_C1-5 GSE147141.ESR1.Ishikawa_C1-5 128 bp overlap
ChIP Ishikawa_Dex_E2 GSE109891.ESR1.Ishikawa_Dex_E2 92 bp overlap
ChIP Ishikawa_E2 GSE132426.ESR1.Ishikawa_E2 141 bp overlap
ChIP Ishikawa_E2 GSE109891.ESR1.Ishikawa_E2 107 bp overlap
ChIP Ishikawa_E2 GSE132426.ESR1.Ishikawa_E2 204 bp overlap
ChIP Ishikawa_E2-1h GSE129803.ESR1.Ishikawa_E2-1h 211 bp overlap
ChIP Ishikawa_E2_D538G_clone2 GSE132426.ESR1.Ishikawa_E2_D538G_clone2 229 bp overlap
ChIP Ishikawa_ETV4-KO1 GSE129803.ESR1.Ishikawa_ETV4-KO1 130 bp overlap
ChIP Ishikawa_ETV4-KO1_Mili GSE129803.ESR1.Ishikawa_ETV4-KO1_Mili 162 bp overlap
ChIP Ishikawa_ETV4-KO2_Mili GSE129803.ESR1.Ishikawa_ETV4-KO2_Mili 119 bp overlap
ChIP Ishikawa_ETV4-OE GSE129803.ESR1.Ishikawa_ETV4-OE 182 bp overlap
ChIP Ishikawa_M1-9-1 GSE147141.ESR1.Ishikawa_M1-9-1 65 bp overlap
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 146 bp overlap
ChIP Ishikawa_siNTC-72h GSE129803.ESR1.Ishikawa_siNTC-72h 142 bp overlap
ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 336 bp overlap
ChIP MCF-7_PaPE-1 GSE93510.ESR1.MCF-7_PaPE-1 312 bp overlap
ChIP U2OS_100nM-E2 GSE151039.ESR1.U2OS_100nM-E2 486 bp overlap
ChIP U2OS_10nM-E2 GSE151039.ESR1.U2OS_10nM-E2 497 bp overlap
ChIP U2OS_10nM-E2-B GSE151039.ESR1.U2OS_10nM-E2-B 515 bp overlap
ETV2::FIGLA 2 datasets
Motif DE_48h DE_48h-ETV2FIGLA_MA1941.2 13 bp overlap
Motif DE_60h DE_60h-ETV2FIGLA_MA1941.2 13 bp overlap
ETV5::FIGLA 2 datasets
Motif DE_48h DE_48h-ETV5FIGLA_MA1945.2 14 bp overlap
Motif DE_60h DE_60h-ETV5FIGLA_MA1945.2 14 bp overlap
ETV5::FOXI1 2 datasets
Motif DE_48h DE_48h-ETV5FOXI1_MA1946.2 12 bp overlap
Motif DE_60h DE_60h-ETV5FOXI1_MA1946.2 12 bp overlap
FEZF2 3 datasets
Motif DE_36h DE_36h-FEZF2_MA2341.1 8 bp overlap
Motif DE_48h DE_48h-FEZF2_MA2341.1 8 bp overlap
Motif DE_60h DE_60h-FEZF2_MA2341.1 8 bp overlap
FIGLA 2 datasets
Motif DE_48h DE_48h-FIGLA_MA0820.2 6 bp overlap
Motif DE_60h DE_60h-FIGLA_MA0820.2 6 bp overlap
FOS 1 dataset
ChIP K-562 ENCSR000DKB.FOS.K-562 117 bp overlap
FOXO1::ELF1 2 datasets
Motif DE_48h DE_48h-FOXO1ELF1_MA1953.2 13 bp overlap
Motif DE_60h DE_60h-FOXO1ELF1_MA1953.2 13 bp overlap
FOXO1::ELK1 2 datasets
Motif DE_48h DE_48h-FOXO1ELK1_MA1954.2 13 bp overlap
Motif DE_60h DE_60h-FOXO1ELK1_MA1954.2 13 bp overlap
FOXO1::ELK3 2 datasets
Motif DE_48h DE_48h-FOXO1ELK3_MA1955.2 13 bp overlap
Motif DE_60h DE_60h-FOXO1ELK3_MA1955.2 13 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 379 bp overlap
ChIP DE DE-GATA4-2 441 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 573 bp overlap
ChIP DE DE-GATA6-2 494 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 271 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 262 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 340 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 413 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 348 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 499 bp overlap
HDAC2 1 dataset
ChIP pre-B-cell GSE107886.HDAC2.pre-B-cell 83 bp overlap
HOXB13 3 datasets
Motif DE_36h DE_36h-HOXB13_MA0901.3 9 bp overlap
Motif DE_48h DE_48h-HOXB13_MA0901.3 9 bp overlap
Motif DE_60h DE_60h-HOXB13_MA0901.3 9 bp overlap
Hnf1A 3 datasets
Motif DE_36h DE_36h-Hnf1A_MA1991.2 10 bp overlap
Motif DE_48h DE_48h-Hnf1A_MA1991.2 10 bp overlap
Motif DE_60h DE_60h-Hnf1A_MA1991.2 10 bp overlap
IKZF1 1 dataset
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 397 bp overlap
IKZF2 3 datasets
Motif DE_36h DE_36h-IKZF2_MA2326.1 6 bp overlap
Motif DE_48h DE_48h-IKZF2_MA2326.1 6 bp overlap
Motif DE_60h DE_60h-IKZF2_MA2326.1 6 bp overlap
IKZF3 1 dataset
ChIP pre-B-cell GSE107886.IKZF3.pre-B-cell 221 bp overlap
JUN 1 dataset
ChIP MDA-BoM-1833 GSE112444.JUN.MDA-BoM-1833 181 bp overlap
MTA2 1 dataset
ChIP pre-B-cell GSE107886.MTA2.pre-B-cell 171 bp overlap
MYF5 3 datasets
Motif DE_36h DE_36h-MYF5_MA1641.2 8 bp overlap
Motif DE_48h DE_48h-MYF5_MA1641.2 8 bp overlap
Motif DE_60h DE_60h-MYF5_MA1641.2 8 bp overlap
NEUROD1 3 datasets
Motif DE_36h DE_36h-NEUROD1_MA1109.2 8 bp overlap
Motif DE_48h DE_48h-NEUROD1_MA1109.2 8 bp overlap
Motif DE_60h DE_60h-NEUROD1_MA1109.2 8 bp overlap
NFATC3 5 datasets
Motif DE_36h DE_36h-NFATC3_MA0625.3 6 bp overlap
Motif DE_48h DE_48h-NFATC3_MA0625.3 6 bp overlap
Motif DE_48h DE_48h-NFATC3_MA0625.3 6 bp overlap
Motif DE_60h DE_60h-NFATC3_MA0625.3 6 bp overlap
Motif DE_60h DE_60h-NFATC3_MA0625.3 6 bp overlap
NR2C2 3 datasets
Motif DE_36h DE_36h-NR2C2_MA0504.2 14 bp overlap
Motif DE_48h DE_48h-NR2C2_MA0504.2 14 bp overlap
Motif DE_60h DE_60h-NR2C2_MA0504.2 14 bp overlap
NR3C1 5 datasets
ChIP A-549 ENCSR000BJR.NR3C1.A-549 193 bp overlap
ChIP ALL_DEX GSE109946.NR3C1.ALL_DEX 203 bp overlap
ChIP ALL_DEX GSE109946.NR3C1.ALL_DEX 187 bp overlap
ChIP NALM-6 GSE67046.NR3C1.NALM-6 339 bp overlap
ChIP SUP-B15_DEX GSE107584.NR3C1.SUP-B15_DEX 197 bp overlap
Neurod2 6 datasets
Motif DE_36h DE_36h-Neurod2_MA0668.3 8 bp overlap
Motif DE_36h DE_36h-Neurod2_MA1993.2 6 bp overlap
Motif DE_48h DE_48h-Neurod2_MA0668.3 8 bp overlap
Motif DE_48h DE_48h-Neurod2_MA1993.2 6 bp overlap
Motif DE_60h DE_60h-Neurod2_MA0668.3 8 bp overlap
Motif DE_60h DE_60h-Neurod2_MA1993.2 6 bp overlap
Nfatc1 5 datasets
Motif DE_36h DE_36h-Nfatc1_MA0624.3 6 bp overlap
Motif DE_48h DE_48h-Nfatc1_MA0624.3 6 bp overlap
Motif DE_48h DE_48h-Nfatc1_MA0624.3 6 bp overlap
Motif DE_60h DE_60h-Nfatc1_MA0624.3 6 bp overlap
Motif DE_60h DE_60h-Nfatc1_MA0624.3 6 bp overlap
Nfatc2 2 datasets
Motif DE_48h DE_48h-Nfatc2_MA0152.3 8 bp overlap
Motif DE_60h DE_60h-Nfatc2_MA0152.3 8 bp overlap
Olig2 3 datasets
Motif DE_36h DE_36h-Olig2_MA1997.2 6 bp overlap
Motif DE_48h DE_48h-Olig2_MA1997.2 6 bp overlap
Motif DE_60h DE_60h-Olig2_MA1997.2 6 bp overlap
PAX5 1 dataset
ChIP NALM-6 GSE126300.PAX5.NALM-6 127 bp overlap
PKNOX2 3 datasets
Motif DE_36h DE_36h-PKNOX2_MA0783.1 12 bp overlap
Motif DE_48h DE_48h-PKNOX2_MA0783.1 12 bp overlap
Motif DE_60h DE_60h-PKNOX2_MA0783.1 12 bp overlap
POLR2A 1 dataset
ChIP spleen ENCFF706IUS 235 bp overlap
POU5F1 2 datasets
ChIP BG03 GSE21614.POU5F1.BG03 217 bp overlap
ChIP SKM-1 GSE93706.POU5F1.SKM-1 183 bp overlap
Pparg::Rxra 3 datasets
Motif DE_36h DE_36h-PpargRxra_MA0065.3 13 bp overlap
Motif DE_48h DE_48h-PpargRxra_MA0065.3 13 bp overlap
Motif DE_60h DE_60h-PpargRxra_MA0065.3 13 bp overlap
Ptf1A 3 datasets
Motif DE_36h DE_36h-Ptf1A_MA1619.2 8 bp overlap
Motif DE_48h DE_48h-Ptf1A_MA1619.2 8 bp overlap
Motif DE_60h DE_60h-Ptf1A_MA1619.2 8 bp overlap
RUNX1 1 dataset
ChIP NALM-6 GSE126300.RUNX1.NALM-6 177 bp overlap
SIX2 2 datasets
ChIP HEK GSE73865.SIX2.HEK 70 bp overlap
ChIP kidney_fetal_16w GSE75948.SIX2.kidney_fetal_16w 107 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 198 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 636 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 467 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 425 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 324 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 451 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 304 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 574 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 413 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 178 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 354 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 435 bp overlap
Smad4 3 datasets
Motif DE_36h DE_36h-Smad4_MA1153.2 7 bp overlap
Motif DE_48h DE_48h-Smad4_MA1153.2 7 bp overlap
Motif DE_60h DE_60h-Smad4_MA1153.2 7 bp overlap
TBL1X 1 dataset
ChIP HEK293T GSE35197.TBL1X.HEK293T 189 bp overlap
TBP 3 datasets
Motif DE_36h DE_36h-TBP_MA0108.3 7 bp overlap
Motif DE_48h DE_48h-TBP_MA0108.3 7 bp overlap
Motif DE_60h DE_60h-TBP_MA0108.3 7 bp overlap
TBR1 2 datasets
Motif DE_48h DE_48h-TBR1_MA0802.2 9 bp overlap
Motif DE_60h DE_60h-TBR1_MA0802.2 9 bp overlap
TBX18 2 datasets
Motif DE_48h DE_48h-TBX18_MA1565.2 9 bp overlap
Motif DE_60h DE_60h-TBX18_MA1565.2 9 bp overlap
TBX2 2 datasets
Motif DE_48h DE_48h-TBX2_MA0688.2 9 bp overlap
Motif DE_60h DE_60h-TBX2_MA0688.2 9 bp overlap
TBX3 2 datasets
Motif DE_48h DE_48h-TBX3_MA1566.3 9 bp overlap
Motif DE_60h DE_60h-TBX3_MA1566.3 9 bp overlap
TCF12 1 dataset
ChIP Hep-G2 ENCSR000BJG.TCF12.Hep-G2 149 bp overlap
TCF3 1 dataset
ChIP RCH-ACV GSE85988.TCF3.RCH-ACV 162 bp overlap
TCF7L2 2 datasets
ChIP HeLa-S3 ENCFF673QAB 492 bp overlap
ChIP HeLa-S3 ENCFF673QAB 501 bp overlap
TEAD4 1 dataset
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 205 bp overlap
TGIF1 3 datasets
Motif DE_36h DE_36h-TGIF1_MA0796.1 12 bp overlap
Motif DE_48h DE_48h-TGIF1_MA0796.1 12 bp overlap
Motif DE_60h DE_60h-TGIF1_MA0796.1 12 bp overlap
TGIF2 3 datasets
Motif DE_36h DE_36h-TGIF2_MA0797.1 12 bp overlap
Motif DE_48h DE_48h-TGIF2_MA0797.1 12 bp overlap
Motif DE_60h DE_60h-TGIF2_MA0797.1 12 bp overlap
TGIF2LX 3 datasets
Motif DE_36h DE_36h-TGIF2LX_MA1571.1 12 bp overlap
Motif DE_48h DE_48h-TGIF2LX_MA1571.1 12 bp overlap
Motif DE_60h DE_60h-TGIF2LX_MA1571.1 12 bp overlap
TGIF2LY 3 datasets
Motif DE_36h DE_36h-TGIF2LY_MA1572.1 12 bp overlap
Motif DE_48h DE_48h-TGIF2LY_MA1572.1 12 bp overlap
Motif DE_60h DE_60h-TGIF2LY_MA1572.1 12 bp overlap
TP53 1 dataset
ChIP IMR-90_APO GSE53491.TP53.IMR-90_APO 198 bp overlap
Tbx6 2 datasets
Motif DE_48h DE_48h-Tbx6_MA1567.3 9 bp overlap
Motif DE_60h DE_60h-Tbx6_MA1567.3 9 bp overlap
Tcf12 3 datasets
Motif DE_36h DE_36h-Tcf12_MA0521.3 6 bp overlap
Motif DE_48h DE_48h-Tcf12_MA0521.3 6 bp overlap
Motif DE_60h DE_60h-Tcf12_MA0521.3 6 bp overlap
Twist2 3 datasets
Motif DE_36h DE_36h-Twist2_MA0633.3 6 bp overlap
Motif DE_48h DE_48h-Twist2_MA0633.3 6 bp overlap
Motif DE_60h DE_60h-Twist2_MA0633.3 6 bp overlap
Wt1 2 datasets
Motif DE_48h DE_48h-Wt1_MA1627.2 10 bp overlap
Motif DE_60h DE_60h-Wt1_MA1627.2 10 bp overlap
ZBTB18 3 datasets
Motif DE_36h DE_36h-ZBTB18_MA0698.2 11 bp overlap
Motif DE_48h DE_48h-ZBTB18_MA0698.2 11 bp overlap
Motif DE_60h DE_60h-ZBTB18_MA0698.2 11 bp overlap
ZBTB48 1 dataset
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 407 bp overlap
ZBTB6 2 datasets
Motif DE_48h DE_48h-ZBTB6_MA1581.2 9 bp overlap
Motif DE_60h DE_60h-ZBTB6_MA1581.2 9 bp overlap
ZEB1 2 datasets
Motif DE_48h DE_48h-ZEB1_MA0103.4 6 bp overlap
Motif DE_60h DE_60h-ZEB1_MA0103.4 6 bp overlap
ZKSCAN5 3 datasets
Motif DE_36h DE_36h-ZKSCAN5_MA1652.2 9 bp overlap
Motif DE_48h DE_48h-ZKSCAN5_MA1652.2 9 bp overlap
Motif DE_60h DE_60h-ZKSCAN5_MA1652.2 9 bp overlap
ZNF184 3 datasets
Motif DE_36h DE_36h-ZNF184_MA2120.1 13 bp overlap
Motif DE_48h DE_48h-ZNF184_MA2120.1 13 bp overlap
Motif DE_60h DE_60h-ZNF184_MA2120.1 13 bp overlap
ZNF257 3 datasets
Motif DE_36h DE_36h-ZNF257_MA1710.2 10 bp overlap
Motif DE_48h DE_48h-ZNF257_MA1710.2 10 bp overlap
Motif DE_60h DE_60h-ZNF257_MA1710.2 10 bp overlap
ZNF3 1 dataset
ChIP K-562 ENCSR195QFV.ZNF3.K-562 184 bp overlap
ZNF341 2 datasets
Motif DE_48h DE_48h-ZNF341_MA1655.2 8 bp overlap
Motif DE_60h DE_60h-ZNF341_MA1655.2 8 bp overlap
ZNF675 1 dataset
Motif DE_48h DE_48h-ZNF675_MA1714.2 19 bp overlap
ZNF90 1 dataset
ChIP HEK293T GSE78099.ZNF90.HEK293T 380 bp overlap
ZSCAN31 2 datasets
Motif DE_48h DE_48h-ZSCAN31_MA1722.2 18 bp overlap
Motif DE_60h DE_60h-ZSCAN31_MA1722.2 18 bp overlap
Zic2 3 datasets
Motif DE_36h DE_36h-Zic2_MA1629.2 9 bp overlap
Motif DE_48h DE_48h-Zic2_MA1629.2 9 bp overlap
Motif DE_60h DE_60h-Zic2_MA1629.2 9 bp overlap