chr10 : 52,599,574 52,600,035
461 bp 67 TFs 0 linked genes
This 461 bp open chromatin element has no linked target genes and is bound by 67 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr10:52,594,574 – 52,605,035
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
67 transcription factors
Source
Cell type
BNC2 2 datasets
ChIP SK-N-SH ENCFF174EMC 118 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR754GYI.BNC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 126 bp overlap
BRD4 8 datasets
ChIP BE2C GSE80151.BRD4.BE2C 461 bp overlap
ChIP CLB-Ga GSE133453.BRD4.CLB-Ga 339 bp overlap
ChIP CLB-Ga_Dinaciclib GSE133453.BRD4.CLB-Ga_Dinaciclib 322 bp overlap
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 448 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.BRD4.Kelly_resistant_JQ1 379 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 461 bp overlap
ChIP SK-N-BE2-C GSE80151.BRD4.SK-N-BE2-C 461 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 461 bp overlap
CDK9 2 datasets
ChIP Kelly_CYC065 GSE107126.CDK9.Kelly_CYC065 461 bp overlap
ChIP Kelly_DMSO GSE107126.CDK9.Kelly_DMSO 461 bp overlap
CHD2 2 datasets
ChIP SK-N-SH ENCFF669KMB 295 bp overlap
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 435 bp overlap
CREB5 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR758GOA.CREB5.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 78 bp overlap
CSRNP3 1 dataset
ChIP SK-N-SH ENCFF710BXD 79 bp overlap
CTCFL 1 dataset
ChIP Kelly_resistant_JQ1 GSE103030.CTCFL.Kelly_resistant_JQ1 151 bp overlap
DUX4 1 dataset
ChIP HEK293 GSE75791.DUX4.HEK293 57 bp overlap
ELF1 1 dataset
ChIP SK-N-MC_SHFLI_96H GSE61944.ELF1.SK-N-MC_SHFLI_96H 224 bp overlap
EP300 3 datasets
ChIP SK-N-SH ENCFF829RWA 214 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 461 bp overlap
ChIP SK-N-SH ENCSR000BUA.EP300.SK-N-SH 272 bp overlap
ESR1 4 datasets
ChIP MCF-7_E2+4OHT_SRC-3 GSE119702.ESR1.MCF-7_E2+4OHT_SRC-3 166 bp overlap
ChIP MCF-7_SRC3_OHT GSE119702.ESR1.MCF-7_SRC3_OHT 166 bp overlap
ChIP ZR751 ERP000783.ESR1.ZR751 174 bp overlap
ChIP breast-cancer_3487 GSE126004.ESR1.breast-cancer_3487 200 bp overlap
ESRRG 1 dataset
ChIP SK-N-SH ENCFF394HLU 92 bp overlap
FLI1 4 datasets
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 400 bp overlap
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 313 bp overlap
ChIP A-673_D17 GSE129155.FLI1.A-673_D17 316 bp overlap
ChIP SK-N-MC_SHGFP_48H GSE61944.FLI1.SK-N-MC_SHGFP_48H 143 bp overlap
FOXA1 9 datasets
ChIP T-47D_JC4745 GSE126004.FOXA1.T-47D_JC4745 71 bp overlap
ChIP T-47D_JC4747 GSE126004.FOXA1.T-47D_JC4747 128 bp overlap
ChIP ZR-75-1_estrogen_ab2 GSE112969.FOXA1.ZR-75-1_estrogen_ab2 117 bp overlap
ChIP ZR-75-1_vehicle_ab2 GSE112969.FOXA1.ZR-75-1_vehicle_ab2 168 bp overlap
ChIP ZR751 GSE72249.FOXA1.ZR751 192 bp overlap
ChIP ZR751_DEX GSE72249.FOXA1.ZR751_DEX 176 bp overlap
ChIP ZR751_E2 GSE72249.FOXA1.ZR751_E2 152 bp overlap
ChIP ZR751_E2_TAM ERP000380.FOXA1.ZR751_E2_TAM 196 bp overlap
ChIP breast-cancer_3487 GSE126004.FOXA1.breast-cancer_3487 216 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 249 bp overlap
ChIP PANC-1_EV GSE119930.FOXA2.PANC-1_EV 199 bp overlap
FOXJ3 1 dataset
ChIP SK-N-SH ENCFF124KVL 324 bp overlap
GATA2 3 datasets
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 461 bp overlap
ChIP SK-N-SH ENCFF764OZD 288 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 439 bp overlap
GATA3 9 datasets
ChIP BE2C GSE65664.GATA3.BE2C 347 bp overlap
ChIP CLB-Ga GSE90683.GATA3.CLB-Ga 432 bp overlap
ChIP Kelly GSE94822.GATA3.Kelly 407 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 362 bp overlap
ChIP SH-SY5Y ENCFF475HYF 278 bp overlap
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 321 bp overlap
ChIP SH-SY5Y GSE65664.GATA3.SH-SY5Y 285 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 331 bp overlap
ChIP SK-N-SH ENCFF040SSB 152 bp overlap
GATA4 1 dataset
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 59 bp overlap
GATA6 2 datasets
ChIP DE_D1 S41-DE-d1-GATA6-exp2 62 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 313 bp overlap
HAND2 3 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 461 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 461 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 458 bp overlap
HOXB13 1 dataset
ChIP G-401 GSE65381.HOXB13.G-401 426 bp overlap
ISL1 3 datasets
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 461 bp overlap
ChIP SK-N-SH ENCFF285GEQ 325 bp overlap
ChIP SK-N-SH ENCFF285GEQ 125 bp overlap
KDM1A 3 datasets
ChIP SH-SY5Y_B0 GSE58258.KDM1A.SH-SY5Y_B0 294 bp overlap
ChIP SH-SY5Y_B0_SHLSD18A GSE58258.KDM1A.SH-SY5Y_B0_SHLSD18A 351 bp overlap
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 461 bp overlap
MAFB 1 dataset
ChIP islet ERP004003.MAFB.islet 208 bp overlap
MAML3 2 datasets
ChIP SK-N-SH GSE69119.MAML3.SK-N-SH 461 bp overlap
ChIP SK-N-SH_RA GSE69119.MAML3.SK-N-SH_RA 437 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 219 bp overlap
MYC 1 dataset
ChIP NB69 GSE138295.MYC.NB69 327 bp overlap
MYCN 8 datasets
ChIP CHP-134 GSE129588.MYCN.CHP-134 169 bp overlap
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 461 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 461 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 114 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 432 bp overlap
ChIP NB-1643 GSE94782.MYCN.NB-1643 124 bp overlap
ChIP NGP GSE80151.MYCN.NGP 350 bp overlap
ChIP SK-N-BE2-C GSE94822.MYCN.SK-N-BE2-C 363 bp overlap
NEUROD1 1 dataset
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 308 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 422 bp overlap
NUTM1 1 dataset
ChIP NUT_DMSO GSE133122.NUTM1.NUT_DMSO 461 bp overlap
PHOX2B 2 datasets
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 461 bp overlap
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 359 bp overlap
POLR2A 1 dataset
ChIP SK-N-MC ENCFF088IVG 389 bp overlap
POU6F1 1 dataset
ChIP SK-N-SH ENCFF834EMP 118 bp overlap
PPARA 2 datasets
ChIP SK-N-SH ENCFF446HWC 195 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR602QEJ.PPARA.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 105 bp overlap
RAD21 3 datasets
ChIP SK-N-SH ENCFF747MAS 251 bp overlap
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 372 bp overlap
ChIP neuroblastoma GSE115862.RAD21.neuroblastoma 341 bp overlap
RARA 1 dataset
ChIP SK-N-SH GSE69119.RARA.SK-N-SH 306 bp overlap
RCOR1 2 datasets
ChIP SK-N-SH ENCFF518EXB 236 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 461 bp overlap
REST 1 dataset
ChIP PFSK1 ENCSR000BOX.REST.PFSK1 126 bp overlap
RUNX1 1 dataset
ChIP 697 GSE138031.RUNX1.697 245 bp overlap
SETDB1 2 datasets
ChIP HEK293 ENCSR348AGV.SETDB1.HEK293 414 bp overlap
ChIP U2OS ENCSR000EYD.SETDB1.U2OS 409 bp overlap
SMARCA4 4 datasets
ChIP NGP GSE134626.SMARCA4.NGP 461 bp overlap
ChIP NGP_ARID1A-het GSE134626.SMARCA4.NGP_ARID1A-het 172 bp overlap
ChIP NGP_ARID1A-mut1 GSE134626.SMARCA4.NGP_ARID1A-mut1 461 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 461 bp overlap
SMARCC1 2 datasets
ChIP SK-N-MC GSE94275.SMARCC1.SK-N-MC 258 bp overlap
ChIP SK-N-MC_shEWSFLI1 GSE94275.SMARCC1.SK-N-MC_shEWSFLI1 350 bp overlap
SMC1A-B 1 dataset
ChIP Kelly_shLUC-res GSE115248.SMC1A-B.Kelly_shLUC-res 164 bp overlap
SNAI2 3 datasets
ChIP SK-N-SH ENCFF449PID 267 bp overlap
ChIP SK-N-SH ENCFF449PID 67 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR106GVM.SNAI2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 150 bp overlap
STAT3 3 datasets
ChIP MDA-MB-157_EtOH GSE85579.STAT3.MDA-MB-157_EtOH 296 bp overlap
ChIP T-47D_JC5062 GSE126004.STAT3.T-47D_JC5062 104 bp overlap
ChIP breast-cancer_3487 GSE126004.STAT3.breast-cancer_3487 253 bp overlap
TBX2 2 datasets
ChIP Kelly GSE94822.TBX2.Kelly 461 bp overlap
ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 332 bp overlap
TCF12 1 dataset
ChIP SK-N-SH ENCFF147AHB 228 bp overlap
TCF4 1 dataset
ChIP SK-N-SH ENCFF270OWF 205 bp overlap
TEAD4 4 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 461 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 461 bp overlap
ChIP SK-N-SH ENCFF754TJT 253 bp overlap
ChIP SK-N-SH ENCSR000BUQ.TEAD4.SK-N-SH 230 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 381 bp overlap
TOX2 2 datasets
ChIP SK-N-SH ENCFF415OYE 173 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR226NRS.TOX2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 361 bp overlap
TSHZ2 2 datasets
ChIP SK-N-SH ENCFF182EBB 228 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 439 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 422 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 422 bp overlap
USF1 1 dataset
ChIP SK-N-SH ENCSR000BMF.USF1.SK-N-SH 111 bp overlap
YY1 1 dataset
ChIP SK-N-SH ENCSR000BLZ.YY1.SK-N-SH 68 bp overlap
ZBTB7A 1 dataset
ChIP HUDEP-2 GSE103445.ZBTB7A.HUDEP-2 267 bp overlap
ZC3H10 1 dataset
ChIP SK-N-SH ENCFF465WAR 153 bp overlap
ZFP30 1 dataset
ChIP SK-N-SH ENCFF375XBD 281 bp overlap
ZNF565 1 dataset
ChIP SK-N-SH ENCFF372UGG 212 bp overlap
ZNF70 1 dataset
ChIP SK-N-SH ENCFF833ACX 71 bp overlap
ZNF750 1 dataset
ChIP keratinocyte_diff GSE57702.ZNF750.keratinocyte_diff 175 bp overlap
ZNF8 1 dataset
ChIP SK-N-SH ENCFF131SMT 230 bp overlap
ZNF808 1 dataset
ChIP HEK293T GSE78099.ZNF808.HEK293T 200 bp overlap