chr9 : 27,665,167 27,665,693
526 bp 80 TFs 0 linked genes
This 526 bp open chromatin element has no linked target genes and is bound by 80 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:27,660,167 – 27,670,693
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
80 transcription factors
Source
Cell type
AR 2 datasets
ChIP LNCaP_r1881 GSE94682.AR.LNCaP_r1881 178 bp overlap
ChIP prostate-cancer_PDX_58 GSE130408.AR.prostate-cancer_PDX_58 112 bp overlap
Arnt 1 dataset
Motif ES_0h ES_0h-Arnt_MA0004.1 6 bp overlap
CDX1 3 datasets
Motif DE_12h DE_12h-CDX1_MA0878.3 10 bp overlap
Motif ES_0h ES_0h-CDX1_MA0878.3 10 bp overlap
Motif ES_0h ES_0h-CDX1_MA0878.3 10 bp overlap
CDX2 3 datasets
Motif ES_0h ES_0h-CDX2_MA0465.3 8 bp overlap
ChIP LS180 GSE31939.CDX2.LS180 185 bp overlap
ChIP LS180_125 GSE31939.CDX2.LS180_125 182 bp overlap
CDX4 3 datasets
Motif DE_12h DE_12h-CDX4_MA1473.2 9 bp overlap
Motif ES_0h ES_0h-CDX4_MA1473.2 9 bp overlap
Motif ES_0h ES_0h-CDX4_MA1473.2 9 bp overlap
CLOCK 1 dataset
Motif ES_0h ES_0h-CLOCK_MA0819.3 7 bp overlap
CREB1 1 dataset
ChIP LNCaP-abl_SHCTR GSE63034.CREB1.LNCaP-abl_SHCTR 324 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF364PUR 244 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 451 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 166 bp overlap
ERG 1 dataset
ChIP VCaP_ETOH GSE49091.ERG.VCaP_ETOH 371 bp overlap
ESR1 1 dataset
ChIP MCF-7_TAMR_E2 GSE86538.ESR1.MCF-7_TAMR_E2 113 bp overlap
ETV1 1 dataset
ChIP MDA-Pca-2b GSE106624.ETV1.MDA-Pca-2b 84 bp overlap
FOXA1 81 datasets
ChIP 22Rv1 GSE96652.FOXA1.22Rv1 379 bp overlap
ChIP 22Rv1 GSE85558.FOXA1.22Rv1 194 bp overlap
ChIP 22Rv1_CST GSE129951.FOXA1.22Rv1_CST 523 bp overlap
ChIP 22Rv1_CST GSE123618.FOXA1.22Rv1_CST 250 bp overlap
ChIP 22Rv1_CST_Crispr-70 GSE123618.FOXA1.22Rv1_CST_Crispr-70 239 bp overlap
ChIP 22Rv1_CST_Crispr_WT3 GSE123618.FOXA1.22Rv1_CST_Crispr_WT3 361 bp overlap
ChIP 22Rv1_Dox GSE85558.FOXA1.22Rv1_Dox 345 bp overlap
ChIP 22Rv1_EtOH GSE80742.FOXA1.22Rv1_EtOH 287 bp overlap
ChIP 22Rv1_R1881 GSE80742.FOXA1.22Rv1_R1881 363 bp overlap
ChIP 22Rv1_TFS_Crispr_WT3 GSE123618.FOXA1.22Rv1_TFS_Crispr_WT3 352 bp overlap
ChIP 22Rv1_ab GSE129951.FOXA1.22Rv1_ab 421 bp overlap
ChIP 22Rv1_i176m_CST GSE123618.FOXA1.22Rv1_i176m_CST 219 bp overlap
ChIP 22Rv1_r261g_CST GSE123618.FOXA1.22Rv1_r261g_CST 267 bp overlap
ChIP LAPC-4_CST_DHT GSE123618.FOXA1.LAPC-4_CST_DHT 335 bp overlap
ChIP LAPC-4_TFS_p358fs-V5 GSE123618.FOXA1.LAPC-4_TFS_p358fs-V5 209 bp overlap
ChIP LNCaP GSE64656.FOXA1.LNCaP 327 bp overlap
ChIP LNCaP GSE52725.FOXA1.LNCaP 242 bp overlap
ChIP LNCaP-C4-2B_CST GSE123618.FOXA1.LNCaP-C4-2B_CST 290 bp overlap
ChIP LNCaP-abl GSE63034.FOXA1.LNCaP-abl 277 bp overlap
ChIP LNCaP_1F5 GSE30623.FOXA1.LNCaP_1F5 146 bp overlap
ChIP LNCaP_DHT GSE28264.FOXA1.LNCaP_DHT 251 bp overlap
ChIP LNCaP_DHT24H GSE58428.FOXA1.LNCaP_DHT24H 387 bp overlap
ChIP LNCaP_DMSO GSE114274.FOXA1.LNCaP_DMSO 225 bp overlap
ChIP LNCaP_DSG GSE114737.FOXA1.LNCaP_DSG 272 bp overlap
ChIP LNCaP_ETOH24H GSE58428.FOXA1.LNCaP_ETOH24H 486 bp overlap
ChIP LNCaP_F266S_shFOXA1 GSE128883.FOXA1.LNCaP_F266S_shFOXA1 275 bp overlap
ChIP LNCaP_FA GSE114737.FOXA1.LNCaP_FA 234 bp overlap
ChIP LNCaP_G87R_shFOXA1 GSE128883.FOXA1.LNCaP_G87R_shFOXA1 236 bp overlap
ChIP LNCaP_GSK GSE148926.FOXA1.LNCaP_GSK 269 bp overlap
ChIP LNCaP_L388M_shFOXA1 GSE128883.FOXA1.LNCaP_L388M_shFOXA1 165 bp overlap
ChIP LNCaP_S2101-48H GSE114266.FOXA1.LNCaP_S2101-48H 357 bp overlap
ChIP LNCaP_S2101-4H GSE114266.FOXA1.LNCaP_S2101-4H 224 bp overlap
ChIP LNCaP_SHFOXA1_R1881 GSE37345.FOXA1.LNCaP_SHFOXA1_R1881 212 bp overlap
ChIP LNCaP_TFS GSE123618.FOXA1.LNCaP_TFS 249 bp overlap
ChIP LNCaP_UPF1069 GSE114274.FOXA1.LNCaP_UPF1069 241 bp overlap
ChIP LNCaP_VEH GSE114266.FOXA1.LNCaP_VEH 354 bp overlap
ChIP LS180 GSE140533.FOXA1.LS180 522 bp overlap
ChIP MCF-7 ENCFF465LTH 391 bp overlap
ChIP MCF-7 GSE81714.FOXA1.MCF-7 283 bp overlap
ChIP MCF-7 ENCSR126YEB.FOXA1.MCF-7 245 bp overlap
ChIP MCF-7 ERP001226.FOXA1.MCF-7 274 bp overlap
ChIP MCF-7 ERP000380.FOXA1.MCF-7 222 bp overlap
ChIP MCF-7 GSE59530.FOXA1.MCF-7 143 bp overlap
ChIP MCF-7-TAMR-1_4OH-Tam GSE75201.FOXA1.MCF-7-TAMR-1_4OH-Tam 102 bp overlap
ChIP MCF-7_E2 GSE60270.FOXA1.MCF-7_E2 263 bp overlap
ChIP MCF-7_E2 GSE23852.FOXA1.MCF-7_E2 226 bp overlap
ChIP MCF-7_E2_TAM ERP000380.FOXA1.MCF-7_E2_TAM 243 bp overlap
ChIP MCF-7_ETOH GSE23852.FOXA1.MCF-7_ETOH 226 bp overlap
ChIP MCF-7_JC4690 GSE126004.FOXA1.MCF-7_JC4690 241 bp overlap
ChIP MCF-7_JC4691 GSE126004.FOXA1.MCF-7_JC4691 243 bp overlap
ChIP MCF-7_JC4692 GSE126004.FOXA1.MCF-7_JC4692 333 bp overlap
ChIP MCF-7_JC4693 GSE126004.FOXA1.MCF-7_JC4693 294 bp overlap
ChIP MCF-7_JC4695 GSE126004.FOXA1.MCF-7_JC4695 234 bp overlap
ChIP MCF-7_TNF GSE59530.FOXA1.MCF-7_TNF 136 bp overlap
ChIP MCF-7_estrogen_ab1 GSE112969.FOXA1.MCF-7_estrogen_ab1 308 bp overlap
ChIP MCF-7_estrogen_ab2 GSE112969.FOXA1.MCF-7_estrogen_ab2 411 bp overlap
ChIP MCF-7_vehicle_ab1 GSE112969.FOXA1.MCF-7_vehicle_ab1 360 bp overlap
ChIP MCF-7_vehicle_ab2 GSE112969.FOXA1.MCF-7_vehicle_ab2 425 bp overlap
ChIP NCI-H3122 GSE39998.FOXA1.NCI-H3122 218 bp overlap
ChIP T-47D_8h GSE137579.FOXA1.T-47D_8h 225 bp overlap
ChIP T-47D_DMSO GSE84593.FOXA1.T-47D_DMSO 214 bp overlap
ChIP T-47D_E2_TAM ERP000380.FOXA1.T-47D_E2_TAM 177 bp overlap
ChIP T-47D_JC4742 GSE126004.FOXA1.T-47D_JC4742 183 bp overlap
ChIP T-47D_JC4745 GSE126004.FOXA1.T-47D_JC4745 217 bp overlap
ChIP T-47D_JC4747 GSE126004.FOXA1.T-47D_JC4747 374 bp overlap
ChIP T-47D_JC4748 GSE126004.FOXA1.T-47D_JC4748 297 bp overlap
ChIP T-47D_shRNF2 GSE137579.FOXA1.T-47D_shRNF2 164 bp overlap
ChIP T-47D_shRNF2_24h GSE137579.FOXA1.T-47D_shRNF2_24h 235 bp overlap
ChIP T-47D_shRNF2_45min GSE137579.FOXA1.T-47D_shRNF2_45min 223 bp overlap
ChIP T-47D_shRNF2_8h GSE137579.FOXA1.T-47D_shRNF2_8h 215 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 374 bp overlap
ChIP primary-breast-cancer_B2_DSG GSE114737.FOXA1.primary-breast-cancer_B2_DSG 375 bp overlap
ChIP primary-prostate-cancer_G2_DSG GSE114737.FOXA1.primary-prostate-cancer_G2_DSG 299 bp overlap
ChIP primary-prostate-cancer_G2_DSG GSE114737.FOXA1.primary-prostate-cancer_G2_DSG 107 bp overlap
ChIP prostate-cancer_PDX_136 GSE130408.FOXA1.prostate-cancer_PDX_136 233 bp overlap
ChIP prostate-cancer_PDX_189-3 GSE130408.FOXA1.prostate-cancer_PDX_189-3 384 bp overlap
ChIP prostate_2483_T GSE130408.FOXA1.prostate_2483_T 309 bp overlap
ChIP prostate_P23_T GSE130408.FOXA1.prostate_P23_T 193 bp overlap
ChIP prostate_P27_T GSE130408.FOXA1.prostate_P27_T 215 bp overlap
ChIP prostate_P5_T GSE130408.FOXA1.prostate_P5_T 240 bp overlap
ChIP prostate_P7_T GSE130408.FOXA1.prostate_P7_T 157 bp overlap
FOXA2 6 datasets
ChIP Caco-2 GSE66218.FOXA2.Caco-2 100 bp overlap
ChIP DE DE-FOXA2-1 513 bp overlap
ChIP DE DE-FOXA2-2 526 bp overlap
ChIP HepG2 ENCFF533COJ 297 bp overlap
ChIP liver_CARN1618 ERP008682.FOXA2.liver_CARN1618 331 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 526 bp overlap
FOXE1 1 dataset
Motif ES_0h ES_0h-FOXE1_MA1487.3 12 bp overlap
FOXS1 1 dataset
Motif ES_0h ES_0h-FOXS1_MA2118.1 8 bp overlap
GABPA 2 datasets
ChIP VCaP_ETOH GSE49091.GABPA.VCaP_ETOH 215 bp overlap
ChIP VCaP_R1881 GSE49091.GABPA.VCaP_R1881 307 bp overlap
GATA4 2 datasets
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 402 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 334 bp overlap
GATA6 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 225 bp overlap
HES2 1 dataset
Motif ES_0h ES_0h-HES2_MA0616.3 9 bp overlap
HES5 1 dataset
Motif ES_0h ES_0h-HES5_MA0821.2 10 bp overlap
HEY1 1 dataset
Motif ES_0h ES_0h-HEY1_MA0823.1 10 bp overlap
HEY2 1 dataset
Motif ES_0h ES_0h-HEY2_MA0649.2 9 bp overlap
HNF4A 1 dataset
ChIP Caco-2_DIFF GSE23436.HNF4A.Caco-2_DIFF 125 bp overlap
HOXA10 3 datasets
Motif DE_12h DE_12h-HOXA10_MA0899.2 9 bp overlap
Motif ES_0h ES_0h-HOXA10_MA0899.2 9 bp overlap
Motif ES_0h ES_0h-HOXA10_MA0899.2 9 bp overlap
HOXB13 11 datasets
Motif DE_12h DE_12h-HOXB13_MA0901.3 9 bp overlap
Motif ES_0h ES_0h-HOXB13_MA0901.3 9 bp overlap
ChIP prostate-cancer_PDX_170-2 GSE130408.HOXB13.prostate-cancer_PDX_170-2 224 bp overlap
ChIP prostate-cancer_PDX_189-4 GSE130408.HOXB13.prostate-cancer_PDX_189-4 80 bp overlap
ChIP prostate_2483_T GSE130408.HOXB13.prostate_2483_T 278 bp overlap
ChIP prostate_2484 GSE130408.HOXB13.prostate_2484 215 bp overlap
ChIP prostate_P23_T GSE130408.HOXB13.prostate_P23_T 168 bp overlap
ChIP prostate_P27_T GSE130408.HOXB13.prostate_P27_T 241 bp overlap
ChIP prostate_P29_T GSE130408.HOXB13.prostate_P29_T 251 bp overlap
ChIP prostate_P5_T GSE130408.HOXB13.prostate_P5_T 204 bp overlap
ChIP prostate_P7_T GSE130408.HOXB13.prostate_P7_T 191 bp overlap
HOXD9 3 datasets
Motif DE_12h DE_12h-HOXD9_MA0913.3 9 bp overlap
Motif ES_0h ES_0h-HOXD9_MA0913.3 9 bp overlap
Motif ES_0h ES_0h-HOXD9_MA0913.3 9 bp overlap
Hoxa13 1 dataset
Motif ES_0h ES_0h-Hoxa13_MA0650.4 8 bp overlap
Hoxd13 1 dataset
Motif ES_0h ES_0h-Hoxd13_MA0909.4 7 bp overlap
KDM1A 1 dataset
ChIP NCI-H526_DMSO GSE66297.KDM1A.NCI-H526_DMSO 198 bp overlap
KLF1 1 dataset
Motif ES_0h ES_0h-KLF1_MA0493.3 8 bp overlap
KLF2 1 dataset
Motif ES_0h ES_0h-KLF2_MA1515.2 8 bp overlap
KLF4 3 datasets
Motif ES_0h ES_0h-KLF4_MA0039.5 8 bp overlap
ChIP WA09 GSE105028.KLF4.WA09 287 bp overlap
ChIP hiPSC GSE56567.KLF4.hiPSC 221 bp overlap
KLF5 2 datasets
Motif ES_0h ES_0h-KLF5_MA0599.1 10 bp overlap
ChIP KATO-III GSE51705.KLF5.KATO-III 204 bp overlap
MAX 5 datasets
Motif ES_0h ES_0h-MAX_MA0058.4 6 bp overlap
ChIP H1 ENCFF914VQY 300 bp overlap
ChIP MCF-7 ENCSR000BUL.MAX.MCF-7 121 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 201 bp overlap
ChIP WTC11 ENCFF223QFY 416 bp overlap
MNT 1 dataset
Motif ES_0h ES_0h-MNT_MA0825.2 6 bp overlap
MTF1 2 datasets
Motif ES_0h ES_0h-MTF1_MA0863.1 14 bp overlap
Motif ES_0h ES_0h-MTF1_MA0863.1 14 bp overlap
MYC 4 datasets
Motif ES_0h ES_0h-MYC_MA0147.4 8 bp overlap
ChIP H1 ENCFF794ZJT 231 bp overlap
ChIP LNCaP_MYC GSE73994.MYC.LNCaP_MYC 95 bp overlap
ChIP LS174T_BI8622 GSE59223.MYC.LS174T_BI8622 110 bp overlap
MYCN 3 datasets
Motif ES_0h ES_0h-MYCN_MA0104.5 8 bp overlap
ChIP LNCaP_DHT GSE117304.MYCN.LNCaP_DHT 471 bp overlap
ChIP LNCaP_EtOH GSE117304.MYCN.LNCaP_EtOH 360 bp overlap
Mlxip 1 dataset
Motif ES_0h ES_0h-Mlxip_MA0622.2 6 bp overlap
NANOG 2 datasets
ChIP WA01 ERP004238.NANOG.WA01 251 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 181 bp overlap
Npas2 1 dataset
Motif ES_0h ES_0h-Npas2_MA0626.2 8 bp overlap
ONECUT1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 449 bp overlap
POLR2A 2 datasets
ChIP prostate gland ENCFF881OMH 346 bp overlap
ChIP transverse colon ENCFF610RWV 419 bp overlap
POU2F1 3 datasets
ChIP 22Rv1_Veh GSE123565.POU2F1.22Rv1_Veh 250 bp overlap
Motif DE_12h DE_12h-POU2F1_MA0785.2 9 bp overlap
Motif ES_0h ES_0h-POU2F1_MA0785.2 9 bp overlap
POU2F1::SOX2 2 datasets
Motif DE_12h DE_12h-POU2F1SOX2_MA1962.1 17 bp overlap
Motif ES_0h ES_0h-POU2F1SOX2_MA1962.1 17 bp overlap
POU2F3 1 dataset
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 289 bp overlap
POU3F1 2 datasets
Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap
Motif ES_0h ES_0h-POU3F1_MA0786.2 10 bp overlap
POU3F3 2 datasets
Motif DE_12h DE_12h-POU3F3_MA0788.1 13 bp overlap
Motif ES_0h ES_0h-POU3F3_MA0788.1 13 bp overlap
POU4F1 2 datasets
Motif DE_12h DE_12h-POU4F1_MA0790.2 12 bp overlap
Motif ES_0h ES_0h-POU4F1_MA0790.2 12 bp overlap
POU4F2 2 datasets
Motif DE_12h DE_12h-POU4F2_MA0683.2 15 bp overlap
Motif ES_0h ES_0h-POU4F2_MA0683.2 15 bp overlap
POU4F3 2 datasets
Motif DE_12h DE_12h-POU4F3_MA0791.2 12 bp overlap
Motif ES_0h ES_0h-POU4F3_MA0791.2 12 bp overlap
POU5F1 4 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 388 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 113 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 526 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 168 bp overlap
POU5F1B 2 datasets
Motif DE_12h DE_12h-POU5F1B_MA0792.1 9 bp overlap
Motif ES_0h ES_0h-POU5F1B_MA0792.1 9 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 281 bp overlap
Pou5f1::Sox2 2 datasets
Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif ES_0h ES_0h-Pou5f1Sox2_MA0142.1 15 bp overlap
REST 1 dataset
ChIP colorectal-cancer_shCDH1 GSE112555.REST.colorectal-cancer_shCDH1 281 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 300 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 191 bp overlap
SMARCC1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 178 bp overlap
SOX10 1 dataset
Motif ES_0h ES_0h-SOX10_MA0442.3 6 bp overlap
SOX2 2 datasets
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 393 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 243 bp overlap
SOX4 1 dataset
Motif ES_0h ES_0h-SOX4_MA0867.3 8 bp overlap
Sox11 1 dataset
Motif ES_0h ES_0h-Sox11_MA0869.3 8 bp overlap
TAF1 1 dataset
ChIP WA01 ENCSR000BHO.TAF1.WA01 147 bp overlap
TLE3 1 dataset
ChIP LNCaP GSE94682.TLE3.LNCaP 219 bp overlap
TRIM28 1 dataset
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 400 bp overlap
USF1 2 datasets
ChIP H1 ENCFF090WVU 241 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 261 bp overlap
USF2 1 dataset
ChIP WTC11 ENCFF139JAW 352 bp overlap
XBP1 1 dataset
ChIP LNCaP_Tg GSE121880.XBP1.LNCaP_Tg 342 bp overlap
YY1 2 datasets
ChIP H1 ENCFF524BTL 227 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 241 bp overlap
Yy1 1 dataset
Motif ES_0h ES_0h-Yy1_MA0095.4 8 bp overlap
ZNF232 1 dataset
ChIP WTC11 ENCFF901BGD 420 bp overlap
ZNF528 2 datasets
Motif DE_12h DE_12h-ZNF528_MA1597.1 17 bp overlap
Motif ES_0h ES_0h-ZNF528_MA1597.1 17 bp overlap
ZNF549 1 dataset
Motif ES_0h ES_0h-ZNF549_MA1728.2 8 bp overlap
ZSCAN4 1 dataset
Motif ES_0h ES_0h-ZSCAN4_MA1155.1 15 bp overlap