chr6 : 144,895,936 144,896,252
316 bp 89 TFs 0 linked genes
This 316 bp open chromatin element has no linked target genes and is bound by 89 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:144,890,936 – 144,901,252
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
89 transcription factors
Source
Cell type
ARID2 1 dataset
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-K785R 207 bp overlap
BARX1 1 dataset
Motif DE_12h DE_12h-BARX1_MA0875.2 6 bp overlap
BCOR 1 dataset
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 217 bp overlap
BRD4 5 datasets
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 193 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 173 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 138 bp overlap
ChIP SK-N-BE2-C_Resistant-veh GSE107706.BRD4.SK-N-BE2-C_Resistant-veh 144 bp overlap
ChIP hESC GSE33281.BRD4.hESC 61 bp overlap
BSX 1 dataset
Motif DE_12h DE_12h-BSX_MA0876.2 6 bp overlap
CTCF 8 datasets
ChIP BE2C ENCFF757SRF 265 bp overlap
ChIP BE2C ENCSR000DQD.CTCF.BE2C 191 bp overlap
ChIP GM23338 ENCFF772DML 201 bp overlap
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 126 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 207 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 214 bp overlap
ChIP SH-SY5Y GSE101295.CTCF.SH-SY5Y 134 bp overlap
ChIP SK-N-SH ENCSR000EIC.CTCF.SK-N-SH 119 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF364PUR 310 bp overlap
DLX1 1 dataset
Motif DE_12h DE_12h-DLX1_MA0879.3 6 bp overlap
DLX6 1 dataset
Motif DE_12h DE_12h-DLX6_MA0882.2 6 bp overlap
Dlx2 1 dataset
Motif DE_12h DE_12h-Dlx2_MA0885.3 8 bp overlap
Dlx3 1 dataset
Motif DE_12h DE_12h-Dlx3_MA0880.2 6 bp overlap
Dlx4 1 dataset
Motif DE_12h DE_12h-Dlx4_MA0881.2 6 bp overlap
Dlx5 1 dataset
Motif DE_12h DE_12h-Dlx5_MA1476.3 8 bp overlap
EBF1 1 dataset
ChIP MUTUL GSE75503.EBF1.MUTUL 294 bp overlap
EP300 2 datasets
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 103 bp overlap
ChIP hESC GSE17917.EP300.hESC 255 bp overlap
ESR1 1 dataset
ChIP Ishikawa_ETV4-KO2_Mili GSE129803.ESR1.Ishikawa_ETV4-KO2_Mili 172 bp overlap
FEZF1 3 datasets
ChIP HEK293 ENCFF528YED 272 bp overlap
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 316 bp overlap
ChIP HEK293 GSE76494.FEZF1.HEK293 294 bp overlap
FOXA1 2 datasets
Motif DE_12h DE_12h-FOXA1_MA0148.5 8 bp overlap
ChIP VCaP_DHT24H GSE58428.FOXA1.VCaP_DHT24H 79 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 315 bp overlap
ChIP DE DE-FOXA2-2 236 bp overlap
Motif DE_12h DE_12h-FOXA2_MA0047.4 8 bp overlap
FOXA3 1 dataset
Motif DE_12h DE_12h-FOXA3_MA1683.2 7 bp overlap
FOXC2 1 dataset
Motif DE_12h DE_12h-FOXC2_MA0846.2 11 bp overlap
FOXD1 1 dataset
Motif DE_12h DE_12h-FOXD1_MA0031.2 7 bp overlap
FOXF2 1 dataset
Motif DE_12h DE_12h-FOXF2_MA0030.2 9 bp overlap
FOXG1 1 dataset
Motif DE_12h DE_12h-FOXG1_MA0613.1 8 bp overlap
FOXI1 1 dataset
Motif DE_12h DE_12h-FOXI1_MA0042.2 7 bp overlap
FOXK1 1 dataset
Motif DE_12h DE_12h-FOXK1_MA0852.3 7 bp overlap
FOXK2 1 dataset
Motif DE_12h DE_12h-FOXK2_MA1103.3 7 bp overlap
FOXL1 1 dataset
Motif DE_12h DE_12h-FOXL1_MA0033.2 7 bp overlap
FOXO4 1 dataset
Motif DE_12h DE_12h-FOXO4_MA0848.1 7 bp overlap
FOXO6 1 dataset
Motif DE_12h DE_12h-FOXO6_MA0849.1 7 bp overlap
FOXP1 2 datasets
Motif DE_12h DE_12h-FOXP1_MA0481.4 7 bp overlap
ChIP H9 GSE31006.FOXP1.H9 183 bp overlap
FOXP2 1 dataset
Motif DE_12h DE_12h-FOXP2_MA0593.2 9 bp overlap
FOXP3 1 dataset
Motif DE_12h DE_12h-FOXP3_MA0850.1 7 bp overlap
FOXP4 2 datasets
Motif DE_12h DE_12h-FOXP4_MA2117.1 7 bp overlap
ChIP WTC11 ENCFF708TAF 273 bp overlap
FOXS1 1 dataset
Motif DE_12h DE_12h-FOXS1_MA2118.1 8 bp overlap
Foxf1 1 dataset
Motif DE_12h DE_12h-Foxf1_MA1606.2 7 bp overlap
Foxj2 1 dataset
Motif DE_12h DE_12h-Foxj2_MA0614.1 8 bp overlap
Foxo1 1 dataset
Motif DE_12h DE_12h-Foxo1_MA0480.3 7 bp overlap
Foxo3 1 dataset
Motif DE_12h DE_12h-Foxo3_MA0157.4 7 bp overlap
GATA3 1 dataset
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 106 bp overlap
GBX2 1 dataset
Motif DE_12h DE_12h-GBX2_MA0890.2 6 bp overlap
HAND2 3 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 228 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 316 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 314 bp overlap
HESX1 1 dataset
Motif DE_12h DE_12h-HESX1_MA0894.2 6 bp overlap
HOXA6 1 dataset
Motif DE_12h DE_12h-HOXA6_MA1497.2 7 bp overlap
HOXA7 1 dataset
Motif DE_12h DE_12h-HOXA7_MA1498.3 6 bp overlap
HOXB6 1 dataset
Motif DE_12h DE_12h-HOXB6_MA1500.2 7 bp overlap
HOXB7 1 dataset
Motif DE_12h DE_12h-HOXB7_MA1501.2 7 bp overlap
HOXB8 1 dataset
Motif DE_12h DE_12h-HOXB8_MA1502.2 7 bp overlap
HOXD3 1 dataset
Motif DE_12h DE_12h-HOXD3_MA0912.2 8 bp overlap
HOXD8 1 dataset
Motif DE_12h DE_12h-HOXD8_MA0910.3 7 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 270 bp overlap
LBX2 1 dataset
Motif DE_12h DE_12h-LBX2_MA0699.2 6 bp overlap
LHX2 1 dataset
Motif DE_12h DE_12h-LHX2_MA0700.3 6 bp overlap
MAX 1 dataset
ChIP HCT116 ENCFF810LEN 95 bp overlap
MAZ 1 dataset
ChIP HEK293 GSE76494.MAZ.HEK293 150 bp overlap
MED1 2 datasets
ChIP HCT-116_shLuc GSE121798.MED1.HCT-116_shLuc 267 bp overlap
ChIP HCT-116_thaps GSE121798.MED1.HCT-116_thaps 266 bp overlap
MSX1 1 dataset
Motif DE_12h DE_12h-MSX1_MA0666.3 6 bp overlap
MSX2 1 dataset
Motif DE_12h DE_12h-MSX2_MA0708.3 6 bp overlap
MYCN 4 datasets
ChIP Kelly GSE94822.MYCN.Kelly 182 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 194 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 224 bp overlap
ChIP SK-N-BE2-C GSE94822.MYCN.SK-N-BE2-C 165 bp overlap
Msx3 1 dataset
Motif DE_12h DE_12h-Msx3_MA0709.2 6 bp overlap
NANOG 9 datasets
ChIP GM23338 ENCFF065NZG 242 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 145 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 316 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 205 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 142 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 316 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 236 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 188 bp overlap
ChIP hESC GSE18292.NANOG.hESC 156 bp overlap
NFIC 1 dataset
Motif DE_12h DE_12h-NFIC_MA1527.2 15 bp overlap
NR4A1 1 dataset
Motif DE_12h DE_12h-NR4A1_MA1112.3 8 bp overlap
Nobox 1 dataset
Motif DE_12h DE_12h-Nobox_MA0125.2 6 bp overlap
Nr2e1 1 dataset
Motif DE_12h DE_12h-Nr2e1_MA0676.1 9 bp overlap
PHIP 2 datasets
ChIP HCT-116_MLL4-SET-KO_ab833 GSE101646.PHIP.HCT-116_MLL4-SET-KO_ab833 238 bp overlap
ChIP HCT-116_ab834 GSE101646.PHIP.HCT-116_ab834 316 bp overlap
POU5F1 2 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 241 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 316 bp overlap
PRDM1 1 dataset
Motif DE_12h DE_12h-PRDM1_MA0508.4 7 bp overlap
RAD21 7 datasets
ChIP H1 ENCFF698EWO 241 bp overlap
ChIP H1 ENCFF967OJF 245 bp overlap
ChIP HEK293_siE1A-TAZ GSE130135.RAD21.HEK293_siE1A-TAZ 283 bp overlap
ChIP SK-N-SH ENCFF747MAS 207 bp overlap
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 172 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 176 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.RAD21.hiPSC_failed-genome-editing 128 bp overlap
RAX 1 dataset
Motif DE_12h DE_12h-RAX_MA0718.2 6 bp overlap
RBPJ 1 dataset
ChIP MUTUL GSE75503.RBPJ.MUTUL 138 bp overlap
REST 1 dataset
ChIP K-562 ENCSR137ZMQ.REST.K-562 179 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 223 bp overlap
SMARCA4 3 datasets
ChIP Aska-SS GSE108025.SMARCA4.Aska-SS 95 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 201 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 149 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 178 bp overlap
SMARCC1 3 datasets
ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 289 bp overlap
ChIP HS-SY-2 GSE108025.SMARCC1.HS-SY-2 249 bp overlap
ChIP TTC-549_Dox GSE71504.SMARCC1.TTC-549_Dox 256 bp overlap
SOX2 2 datasets
ChIP hESC GSE18292.SOX2.hESC 95 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 194 bp overlap
SS18 2 datasets
ChIP Aska-SS GSE108025.SS18.Aska-SS 316 bp overlap
ChIP SYO-1 GSE108025.SS18.SYO-1 184 bp overlap
STAT3 1 dataset
ChIP MDA-MB-157_EtOH GSE85579.STAT3.MDA-MB-157_EtOH 125 bp overlap
TBX2 1 dataset
ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 128 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 178 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 178 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 316 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 299 bp overlap
ZNF768 1 dataset
Motif DE_12h DE_12h-ZNF768_MA1731.2 9 bp overlap
ZSCAN31 1 dataset
Motif DE_12h DE_12h-ZSCAN31_MA1722.2 18 bp overlap
Zic2 1 dataset
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap