chr6 : 70,291,768 – 70,292,539
771 bp 61 TFs 1 linked gene
This 771 bp open chromatin element is linked to COL9A1 and is bound by 61 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
COL9A1 8.6 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:70,286,768 – 70,297,539
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
61 transcription factors
Source
Cell type
AR 2 datasets
ChIP VCaP_DHT24H GSE58428.AR.VCaP_DHT24H 159 bp overlap
ChIP VCaP_DHT24H_SHFOXP1 GSE58428.AR.VCaP_DHT24H_SHFOXP1 106 bp overlap
BAF155 1 dataset
ChIP VCaP_shARID1A GSE110655.BAF155.VCaP_shARID1A 124 bp overlap
DUXA 2 datasets
Motif DE_36h DE_36h-DUXA_MA0884.2 13 bp overlap
Motif DE_48h DE_48h-DUXA_MA0884.2 13 bp overlap
EOMES 2 datasets
Motif DE_36h DE_36h-EOMES_MA0800.2 9 bp overlap
ChIP hESC GSE26097.EOMES.hESC 610 bp overlap
ESRRA 1 dataset
Motif DE_48h DE_48h-ESRRA_MA0592.4 9 bp overlap
ESRRB 1 dataset
Motif DE_48h DE_48h-ESRRB_MA0141.4 10 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 214 bp overlap
EZH2 1 dataset
ChIP HCT-116 ENCSR046HGP.EZH2.HCT-116 218 bp overlap
Esrrg 1 dataset
Motif DE_48h DE_48h-Esrrg_MA0643.2 9 bp overlap
FOXA1 7 datasets
ChIP 22Rv1 GSE96652.FOXA1.22Rv1 67 bp overlap
ChIP 22Rv1_CST GSE129951.FOXA1.22Rv1_CST 68 bp overlap
ChIP 22Rv1_R1881 GSE80742.FOXA1.22Rv1_R1881 62 bp overlap
ChIP HEK293_i176m_TFS GSE123618.FOXA1.HEK293_i176m_TFS 53 bp overlap
ChIP LNCaP GSE64656.FOXA1.LNCaP 190 bp overlap
ChIP LNCaP_DMSO GSE114274.FOXA1.LNCaP_DMSO 183 bp overlap
ChIP LNCaP_UPF1069 GSE114274.FOXA1.LNCaP_UPF1069 133 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 598 bp overlap
ChIP DE DE-FOXA2-2 261 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 85 bp overlap
GATA1 1 dataset
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 55 bp overlap
GATA2 4 datasets
ChIP LNCaP GSE38391.GATA2.LNCaP 153 bp overlap
ChIP LNCaP GSE52725.GATA2.LNCaP 153 bp overlap
ChIP VCaP GSE125236.GATA2.VCaP 215 bp overlap
ChIP VCaP_JQ1 GSE125236.GATA2.VCaP_JQ1 217 bp overlap
GATA4 8 datasets
ChIP DE DE-GATA4-1 723 bp overlap
ChIP DE DE-GATA4-2 735 bp overlap
ChIP G296S GSE85628.GATA4.G296S 585 bp overlap
ChIP G296S_2 GSE85628.GATA4.G296S_2 585 bp overlap
ChIP G296S_4 GSE85628.GATA4.G296S_4 188 bp overlap
ChIP foregut GSE117136.GATA4.foregut 691 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 391 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 686 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 728 bp overlap
ChIP DE DE-GATA6-2 771 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 538 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 677 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 766 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 686 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 625 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 700 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 82 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 589 bp overlap
HOXB13 2 datasets
ChIP prostate_2484 GSE130408.HOXB13.prostate_2484 122 bp overlap
ChIP prostate_P29_T GSE130408.HOXB13.prostate_P29_T 72 bp overlap
IRF2 2 datasets
Motif DE_36h DE_36h-IRF2_MA0051.2 16 bp overlap
Motif DE_48h DE_48h-IRF2_MA0051.2 16 bp overlap
IRF8 2 datasets
Motif DE_36h DE_36h-IRF8_MA0652.2 13 bp overlap
Motif DE_48h DE_48h-IRF8_MA0652.2 13 bp overlap
IRF9 2 datasets
Motif DE_36h DE_36h-IRF9_MA0653.1 15 bp overlap
Motif DE_48h DE_48h-IRF9_MA0653.1 15 bp overlap
Isl1 1 dataset
Motif DE_36h DE_36h-Isl1_MA1608.2 7 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 293 bp overlap
MEIS1 4 datasets
Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap
Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap
Motif DE_48h DE_48h-MEIS1_MA0498.3 5 bp overlap
Motif DE_48h DE_48h-MEIS1_MA0498.3 5 bp overlap
MGA 1 dataset
Motif DE_36h DE_36h-MGA_MA0801.1 8 bp overlap
MGA::EVX1 1 dataset
Motif DE_36h DE_36h-MGAEVX1_MA1960.2 11 bp overlap
NFYA 1 dataset
Motif DE_36h DE_36h-NFYA_MA0060.4 8 bp overlap
NFYB 1 dataset
Motif DE_36h DE_36h-NFYB_MA0502.3 9 bp overlap
NKX6-3 1 dataset
Motif DE_36h DE_36h-NKX6-3_MA1530.2 8 bp overlap
NR2F1 1 dataset
ChIP K-562 ENCSR970NKQ.NR2F1.K-562 313 bp overlap
NR5A1 1 dataset
Motif DE_48h DE_48h-NR5A1_MA1540.3 12 bp overlap
NR6A1 1 dataset
Motif DE_48h DE_48h-NR6A1_MA1541.2 14 bp overlap
Nr5A2 1 dataset
Motif DE_48h DE_48h-Nr5A2_MA0505.3 9 bp overlap
PAX5 1 dataset
ChIP fetal_testis GSE100639.PAX5.fetal_testis 194 bp overlap
PDX1 1 dataset
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 150 bp overlap
POU3F1 1 dataset
Motif DE_36h DE_36h-POU3F1_MA0786.2 10 bp overlap
POU3F4 1 dataset
Motif DE_36h DE_36h-POU3F4_MA0789.1 9 bp overlap
PRDM1 1 dataset
ChIP fetal_testis GSE100639.PRDM1.fetal_testis 155 bp overlap
RNF2 1 dataset
ChIP SYO-1_shCt GSE139053.RNF2.SYO-1_shCt 58 bp overlap
RORA 2 datasets
Motif DE_36h DE_36h-RORA_MA0072.2 11 bp overlap
Motif DE_48h DE_48h-RORA_MA0072.2 11 bp overlap
SIX2 2 datasets
ChIP HEK GSE73865.SIX2.HEK 211 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 158 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 304 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 645 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 303 bp overlap
SMARCC1 1 dataset
ChIP SYO-1_shRING1A-B GSE139053.SMARCC1.SYO-1_shRING1A-B 420 bp overlap
SPI1 1 dataset
ChIP U-937 GSE128834.SPI1.U-937 175 bp overlap
SS18 1 dataset
ChIP SYO-1_shCt GSE139053.SS18.SYO-1_shCt 594 bp overlap
TAL1 1 dataset
ChIP K-562 GSE107726.TAL1.K-562 171 bp overlap
TBR1 1 dataset
Motif DE_36h DE_36h-TBR1_MA0802.2 9 bp overlap
TBX1 1 dataset
Motif DE_36h DE_36h-TBX1_MA0805.1 8 bp overlap
TBX15 1 dataset
Motif DE_36h DE_36h-TBX15_MA0803.1 8 bp overlap
TBX18 1 dataset
Motif DE_36h DE_36h-TBX18_MA1565.2 9 bp overlap
TBX2 1 dataset
Motif DE_36h DE_36h-TBX2_MA0688.2 9 bp overlap
TBX20 1 dataset
Motif DE_36h DE_36h-TBX20_MA0689.1 11 bp overlap
TBX21 1 dataset
Motif DE_36h DE_36h-TBX21_MA0690.3 10 bp overlap
TBX3 1 dataset
Motif DE_36h DE_36h-TBX3_MA1566.3 9 bp overlap
TBX4 1 dataset
Motif DE_36h DE_36h-TBX4_MA0806.1 8 bp overlap
TBX5 5 datasets
Motif DE_36h DE_36h-TBX5_MA0807.1 8 bp overlap
ChIP G296S GSE85628.TBX5.G296S 213 bp overlap
ChIP G296S_2 GSE85628.TBX5.G296S_2 213 bp overlap
ChIP G296S_4 GSE85628.TBX5.G296S_4 227 bp overlap
ChIP hiPSC GSE81585.TBX5.hiPSC 335 bp overlap
TEAD1 1 dataset
Motif DE_36h DE_36h-TEAD1_MA0090.4 9 bp overlap
TEAD2 1 dataset
Motif DE_36h DE_36h-TEAD2_MA1121.2 7 bp overlap
TEAD3 1 dataset
Motif DE_36h DE_36h-TEAD3_MA0808.1 8 bp overlap
TEAD4 1 dataset
Motif DE_36h DE_36h-TEAD4_MA0809.3 8 bp overlap
TLE3 1 dataset
ChIP LNCaP GSE94682.TLE3.LNCaP 60 bp overlap
Tbx6 1 dataset
Motif DE_36h DE_36h-Tbx6_MA1567.3 9 bp overlap
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