chr5 : 145,838,088 – 145,838,731

643 bp 101 TFs 1 linked gene

This 643 bp open chromatin element is linked to PRELID2 and is bound by 101 transcription factors.

Linked Genes

1 gene

Gene	Expression	Dist. to TSS	Distance	Link type
PRELID2		2.7 kb	Proximal	Proximity

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

101 transcription factors

ARNT::HIF1A 1 dataset

Motif DE_36h DE_36h-ARNTHIF1A_MA0259.2 5 bp overlap

ASCL1 2 datasets

Motif DE_36h DE_36h-ASCL1_MA1631.2 9 bp overlap

ChIP NCI-H82 GSE69394.ASCL1.NCI-H82 188 bp overlap

Arid3a 1 dataset

Motif DE_36h DE_36h-Arid3a_MA0151.1 6 bp overlap

BCL11A 1 dataset

Motif DE_36h DE_36h-BCL11A_MA2324.1 7 bp overlap

CBFA2T3 2 datasets

ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 209 bp overlap

ChIP K562 ENCFF673OEZ 411 bp overlap

CEBPA 2 datasets

Motif DE_36h DE_36h-CEBPA_MA0102.5 10 bp overlap

ChIP Hep-G2 ERP000209.CEBPA.Hep-G2 149 bp overlap

CEBPB 1 dataset

ChIP Hep-G2 ENCSR000EEX.CEBPB.Hep-G2 133 bp overlap

CEBPD 2 datasets

Motif DE_36h DE_36h-CEBPD_MA0836.3 8 bp overlap

CRX 3 datasets

ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 81 bp overlap

ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 570 bp overlap

ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 525 bp overlap

CTCF 2 datasets

ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 71 bp overlap

ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 439 bp overlap

Crx 1 dataset

Motif DE_36h DE_36h-Crx_MA0467.3 6 bp overlap

Dmbx1 1 dataset

Motif DE_36h DE_36h-Dmbx1_MA0883.2 10 bp overlap

EOMES 2 datasets

ChIP hESC GSE26097.EOMES.hESC 158 bp overlap

ChIP hESC GSE26097.EOMES.hESC 154 bp overlap

ESR1 1 dataset

ChIP MCF-7_E2 ERP000901.ESR1.MCF-7_E2 111 bp overlap

ESRRG 1 dataset

ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 264 bp overlap

ETV2::FIGLA 1 dataset

Motif DE_36h DE_36h-ETV2FIGLA_MA1941.2 13 bp overlap

ETV5::FIGLA 1 dataset

Motif DE_36h DE_36h-ETV5FIGLA_MA1945.2 14 bp overlap

FERD3L 1 dataset

Motif DE_36h DE_36h-FERD3L_MA1485.1 14 bp overlap

FIGLA 1 dataset

Motif DE_36h DE_36h-FIGLA_MA0820.2 6 bp overlap

FOXA2 2 datasets

ChIP DE DE-FOXA2-1 358 bp overlap

ChIP DE DE-FOXA2-2 277 bp overlap

FOXH1 1 dataset

Motif DE_36h DE_36h-FOXH1_MA0479.2 8 bp overlap

FOXK1 1 dataset

ChIP Hep-G2 ENCSR603BJQ.FOXK1.Hep-G2 123 bp overlap

GATA4 2 datasets

ChIP DE DE-GATA4-1 342 bp overlap

ChIP DE DE-GATA4-2 469 bp overlap

GATA6 9 datasets

ChIP DE DE-GATA6-1 461 bp overlap

ChIP DE DE-GATA6-2 528 bp overlap

Motif DE_36h DE_36h-GATA6_MA1104.3 8 bp overlap

ChIP DE_D1 S09-DE-d1-GATA6-exp1 565 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 643 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 454 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 643 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 605 bp overlap

ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 433 bp overlap

GFI1 1 dataset

Motif DE_36h DE_36h-GFI1_MA0038.3 11 bp overlap

GSC 1 dataset

Motif DE_36h DE_36h-GSC_MA0648.2 6 bp overlap

GSC2 1 dataset

Motif DE_36h DE_36h-GSC2_MA0891.2 6 bp overlap

Gata3 1 dataset

Motif DE_36h DE_36h-Gata3_MA0037.5 8 bp overlap

Gfi1B 1 dataset

Motif DE_36h DE_36h-Gfi1B_MA0483.2 10 bp overlap

HAND2 1 dataset

Motif DE_36h DE_36h-HAND2_MA1638.2 6 bp overlap

HLF 2 datasets

ChIP Hep-G2 ENCSR528PSI.HLF.Hep-G2 252 bp overlap

ChIP HepG2 ENCFF854JLR 245 bp overlap

HOXC13 1 dataset

Motif DE_36h DE_36h-HOXC13_MA0907.2 9 bp overlap

Hand1::Tcf3 1 dataset

Motif DE_36h DE_36h-Hand1Tcf3_MA0092.2 9 bp overlap

Hnf1A 1 dataset

Motif DE_36h DE_36h-Hnf1A_MA1991.2 10 bp overlap

Lef1 2 datasets

Motif DE_36h DE_36h-Lef1_MA0768.3 8 bp overlap

MAFK 1 dataset

Motif DE_36h DE_36h-MAFK_MA0496.4 10 bp overlap

MEF2D 2 datasets

ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 427 bp overlap

ChIP retina_Hu21 GSE137311.MEF2D.retina_Hu21 64 bp overlap

MEIS1 2 datasets

Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap

Mecom 1 dataset

Motif DE_36h DE_36h-Mecom_MA0029.2 11 bp overlap

NEUROD1 3 datasets

ChIP D283-Med GSE92582.NEUROD1.D283-Med 71 bp overlap

ChIP D283-Med GSE92582.NEUROD1.D283-Med 369 bp overlap

ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 327 bp overlap

NEUROG2 1 dataset

Motif DE_36h DE_36h-NEUROG2_MA1642.2 7 bp overlap

NFATC3 1 dataset

Motif DE_36h DE_36h-NFATC3_MA0625.3 6 bp overlap

NFATC4 1 dataset

Motif DE_36h DE_36h-NFATC4_MA1525.3 9 bp overlap

NFYB 2 datasets

Motif DE_36h DE_36h-NFYB_MA0502.3 9 bp overlap

ChIP Hep-G2 ENCSR935GZV.NFYB.Hep-G2 214 bp overlap

NR1D1 1 dataset

Motif DE_36h DE_36h-NR1D1_MA1531.2 14 bp overlap

NR1D2 1 dataset

Motif DE_36h DE_36h-NR1D2_MA1532.2 15 bp overlap

NR2C1 1 dataset

Motif DE_36h DE_36h-NR2C1_MA1535.2 6 bp overlap

NR2C2 1 dataset

Motif DE_36h DE_36h-NR2C2_MA1536.2 6 bp overlap

NR2F2 1 dataset

ChIP K-562 ENCSR000BRS.NR2F2.K-562 225 bp overlap

NR4A1 1 dataset

Motif DE_36h DE_36h-NR4A1_MA1112.3 8 bp overlap

NR4A2 1 dataset

Motif DE_36h DE_36h-NR4A2_MA0160.3 8 bp overlap

NRL 1 dataset

ChIP retina_Hu13 GSE137311.NRL.retina_Hu13 60 bp overlap

Nfatc1 1 dataset

Motif DE_36h DE_36h-Nfatc1_MA0624.3 6 bp overlap

Nfatc2 1 dataset

Motif DE_36h DE_36h-Nfatc2_MA0152.3 8 bp overlap

Nr1H2 1 dataset

Motif DE_36h DE_36h-Nr1H2_MA1996.2 6 bp overlap

Nr1H4 1 dataset

Motif DE_36h DE_36h-Nr1H4_MA1110.3 6 bp overlap

Nr1h3 1 dataset

Motif DE_36h DE_36h-Nr1h3_MA2337.1 6 bp overlap

OTX1 1 dataset

Motif DE_36h DE_36h-OTX1_MA0711.2 6 bp overlap

OTX2 1 dataset

ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 541 bp overlap

PAX6 1 dataset

Motif DE_36h DE_36h-PAX6_MA0069.1 14 bp overlap

PBX3 1 dataset

Motif DE_36h DE_36h-PBX3_MA1114.2 11 bp overlap

PITX1 1 dataset

Motif DE_36h DE_36h-PITX1_MA0682.3 6 bp overlap

PITX2 1 dataset

Motif DE_36h DE_36h-PITX2_MA1547.2 8 bp overlap

PITX3 1 dataset

Motif DE_36h DE_36h-PITX3_MA0714.2 6 bp overlap

PKNOX1 2 datasets

Motif DE_36h DE_36h-PKNOX1_MA0782.3 10 bp overlap

ChIP K-562 ENCSR115SMW.PKNOX1.K-562 236 bp overlap

PKNOX2 1 dataset

Motif DE_36h DE_36h-PKNOX2_MA0783.1 12 bp overlap

POLR2A 1 dataset

ChIP stomach ENCFF820WZN 345 bp overlap

POU2F1::SOX2 1 dataset

Motif DE_36h DE_36h-POU2F1SOX2_MA1962.1 17 bp overlap

PRDM9 1 dataset

Motif DE_36h DE_36h-PRDM9_MA1723.2 20 bp overlap

Prdm5 1 dataset

Motif DE_36h DE_36h-Prdm5_MA1999.2 11 bp overlap

Ptf1A 1 dataset

Motif DE_36h DE_36h-Ptf1A_MA1618.2 9 bp overlap

RHOXF1 1 dataset

Motif DE_36h DE_36h-RHOXF1_MA0719.2 6 bp overlap

RORB 1 dataset

ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 478 bp overlap

SMAD2 1 dataset

Motif DE_36h DE_36h-SMAD2_MA1964.2 6 bp overlap

SMAD2-3 3 datasets

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 607 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 643 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 628 bp overlap

SMAD2_3 5 datasets

ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 454 bp overlap

ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 633 bp overlap

ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 518 bp overlap

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 423 bp overlap

ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 290 bp overlap

SMARCA4 1 dataset

ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 311 bp overlap

SNAI1 1 dataset

Motif DE_36h DE_36h-SNAI1_MA1558.2 7 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 295 bp overlap

SOX2 1 dataset

ChIP RENVM GSE49404.SOX2.RENVM 158 bp overlap

SPIB 1 dataset

ChIP OCI-Ly10 GSE56857.SPIB.OCI-Ly10 108 bp overlap

TCF12 1 dataset

Motif DE_36h DE_36h-TCF12_MA1648.2 7 bp overlap

TCF3 1 dataset

Motif DE_36h DE_36h-TCF3_MA0522.4 7 bp overlap

TCF4 1 dataset

Motif DE_36h DE_36h-TCF4_MA0830.3 8 bp overlap

TCF7L1 1 dataset

Motif DE_36h DE_36h-TCF7L1_MA1421.1 12 bp overlap

TCF7L2 1 dataset

Motif DE_36h DE_36h-TCF7L2_MA0523.2 9 bp overlap

TEF 1 dataset

Motif DE_36h DE_36h-TEF_MA0843.2 10 bp overlap

TFAP4::ETV1 1 dataset

Motif DE_36h DE_36h-TFAP4ETV1_MA1966.2 13 bp overlap

TRPS1 1 dataset

Motif DE_36h DE_36h-TRPS1_MA1970.2 8 bp overlap

TWIST1 1 dataset

Motif DE_36h DE_36h-TWIST1_MA1123.3 8 bp overlap

ZBTB18 1 dataset

Motif DE_36h DE_36h-ZBTB18_MA0698.2 11 bp overlap

ZBTB24 2 datasets

Motif DE_36h DE_36h-ZBTB24_MA2330.1 10 bp overlap

ChIP HCT-116 GSE111683.ZBTB24.HCT-116 320 bp overlap

ZEB1 1 dataset

Motif DE_36h DE_36h-ZEB1_MA0103.4 6 bp overlap

ZFP91 2 datasets

ChIP K-562 ENCSR898XMH.ZFP91.K-562 505 bp overlap

ChIP K562 ENCFF501CDP 98 bp overlap

ZIM3 1 dataset

Motif DE_36h DE_36h-ZIM3_MA1709.2 11 bp overlap

ZNF24 8 datasets

ChIP Hep-G2 ENCSR362NWP.ZNF24.Hep-G2 102 bp overlap

ChIP K-562 ENCSR099NCH.ZNF24.K-562 479 bp overlap

ChIP K-562 ENCSR695EQB.ZNF24.K-562 323 bp overlap

ChIP K-562 ENCSR385AHH.ZNF24.K-562 164 bp overlap

ChIP K-562 ENCSR117WTM.ZNF24.K-562 67 bp overlap

ChIP K562 ENCFF497GLV 58 bp overlap

ChIP K562 ENCFF615YYW 186 bp overlap

ChIP K562 ENCFF877JCX 106 bp overlap

ZNF354A 1 dataset

Motif DE_36h DE_36h-ZNF354A_MA1978.2 20 bp overlap

ZNF354C 1 dataset

Motif DE_36h DE_36h-ZNF354C_MA0130.1 6 bp overlap

ZNF692 1 dataset

Motif DE_36h DE_36h-ZNF692_MA1986.2 8 bp overlap

ZNF85 1 dataset

Motif DE_36h DE_36h-ZNF85_MA1720.2 12 bp overlap

Zfx 1 dataset

Motif DE_36h DE_36h-Zfx_MA0146.3 10 bp overlap