chr5 : 141,051,043 141,051,435
392 bp 71 TFs 1 linked gene
This 392 bp open chromatin element is linked to PCDHB1 and is bound by 71 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
PCDHB1 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:141,046,043 – 141,056,435
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
71 transcription factors
Source
Cell type
AFF4 1 dataset
ChIP WTC11 ENCFF556XTF 204 bp overlap
ASCL1 3 datasets
ChIP NCI-H2107 GSE69394.ASCL1.NCI-H2107 139 bp overlap
ChIP NCI-H889 GSE69394.ASCL1.NCI-H889 109 bp overlap
ChIP SCLC_ASCLP GSE61197.ASCL1.SCLC_ASCLP 165 bp overlap
ASH2L 3 datasets
ChIP H1 ENCFF399KAM 90 bp overlap
ChIP H1 ENCFF399KAM 83 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 392 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 230 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 373 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 392 bp overlap
BRD4 2 datasets
ChIP HCC1937 GSE124748.BRD4.HCC1937 132 bp overlap
ChIP cortical-interneuron_KCl-pos GSE117508.BRD4.cortical-interneuron_KCl-pos 157 bp overlap
CEBPA 1 dataset
ChIP T-47D_siCtrl GSE132649.CEBPA.T-47D_siCtrl 87 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 206 bp overlap
CHD4 1 dataset
ChIP SCMC GSE155861.CHD4.SCMC 221 bp overlap
CHD7 1 dataset
ChIP H1 ENCFF126NLU 213 bp overlap
CTCF 2 datasets
ChIP gastroesophageal-sphincter ENCSR298ZPF.CTCF.gastroesophageal-sphincter 214 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 223 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 219 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF460KDD 150 bp overlap
E2F1 2 datasets
ChIP MCF-7 ENCFF692OYJ 213 bp overlap
ChIP MCF-7 ENCSR000EWX.E2F1.MCF-7 144 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 102 bp overlap
ESR1 1 dataset
ChIP MCF-7_PaPE-1 GSE93510.ESR1.MCF-7_PaPE-1 102 bp overlap
ETV6 2 datasets
ChIP WTC11 ENCFF812SCD 342 bp overlap
ChIP WTC11 ENCFF812SCD 106 bp overlap
EZH2 8 datasets
ChIP DU145_SH4 GSE135623.EZH2.DU145_SH4 392 bp overlap
ChIP H1 ENCFF232NZA 392 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 100 bp overlap
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 137 bp overlap
ChIP SK-N-MC ENCFF674XUJ 284 bp overlap
ChIP WA01 ENCSR000ASY.EZH2.WA01 220 bp overlap
ChIP neural_progenitor ENCSR069DPL.EZH2.neural_progenitor 86 bp overlap
ChIP prostate-cancer_plko GSE107780.EZH2.prostate-cancer_plko 92 bp overlap
FLI1 1 dataset
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 79 bp overlap
FOXL2 1 dataset
ChIP KGN_1513 GSE138496.FOXL2.KGN_1513 363 bp overlap
GABPA 1 dataset
ChIP liver ENCSR038GMB.GABPA.liver 132 bp overlap
GATA2 1 dataset
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 182 bp overlap
GATA4 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 241 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 133 bp overlap
HDAC1 2 datasets
ChIP MCF-7_ARID1A-KO_4-OHT_clone14 GSE123284.HDAC1.MCF-7_ARID1A-KO_4-OHT_clone14 100 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.HDAC1.MCF-7_parental_4-hydroxytamoxifen 392 bp overlap
JARID2 2 datasets
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 128 bp overlap
ChIP UTEIPS7 GSE48516.JARID2.UTEIPS7 96 bp overlap
JUN 5 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 210 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 356 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 384 bp overlap
ChIP MCF-7_DMSO GSE157385.JUN.MCF-7_DMSO 392 bp overlap
ChIP MCF-7_abemaciclib GSE157385.JUN.MCF-7_abemaciclib 392 bp overlap
KDM1A 3 datasets
ChIP NCI-H526_DMSO GSE66297.KDM1A.NCI-H526_DMSO 166 bp overlap
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 155 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 113 bp overlap
KDM4A 3 datasets
ChIP WA01 ENCSR000AVC.KDM4A.WA01 252 bp overlap
ChIP hiPSC_IIA11 GSE106870.KDM4A.hiPSC_IIA11 191 bp overlap
ChIP hiPSC_IID12 GSE106870.KDM4A.hiPSC_IID12 131 bp overlap
MAFB 1 dataset
ChIP islet ERP004003.MAFB.islet 170 bp overlap
MEN1 1 dataset
ChIP PC-3 GSE132827.MEN1.PC-3 275 bp overlap
MTF2 1 dataset
ChIP DU145_SH4 GSE135623.MTF2.DU145_SH4 287 bp overlap
MYOD1 4 datasets
ChIP RD GSE137168.MYOD1.RD 160 bp overlap
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 118 bp overlap
ChIP RH4 GSE83726.MYOD1.RH4 117 bp overlap
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 128 bp overlap
MYOG 1 dataset
ChIP RH30_DMSO GSE85169.MYOG.RH30_DMSO 301 bp overlap
NANOG 7 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 392 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 300 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 117 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 392 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 372 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 247 bp overlap
ChIP hESC GSE18292.NANOG.hESC 192 bp overlap
OVOL1 1 dataset
ChIP MCF-7 ENCFF537GWI 71 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 288 bp overlap
PDX1 1 dataset
ChIP hiPSC GSE125768.PDX1.hiPSC 195 bp overlap
PHF8 1 dataset
ChIP H1 ENCFF427UFV 209 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 85 bp overlap
POLR2A 3 datasets
ChIP GM23338 ENCFF450WCS 81 bp overlap
ChIP body of pancreas ENCFF501FEC 113 bp overlap
ChIP body of pancreas ENCFF727UBE 276 bp overlap
POU2F1 1 dataset
ChIP 22Rv1_Veh GSE123565.POU2F1.22Rv1_Veh 392 bp overlap
POU2F3 1 dataset
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 254 bp overlap
POU5F1 5 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 356 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 392 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 392 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 274 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 187 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 111 bp overlap
PRDM1 2 datasets
ChIP A-549 ENCSR977FEF.PRDM1.A-549 165 bp overlap
ChIP A549 ENCFF012KDW 185 bp overlap
RBBP4 2 datasets
ChIP SCMC GSE155861.RBBP4.SCMC 161 bp overlap
ChIP SCMC GSE155861.RBBP4.SCMC 131 bp overlap
RBBP5 2 datasets
ChIP H1 ENCFF905HFL 198 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 263 bp overlap
REST 1 dataset
ChIP colorectal-cancer_CRC121_dissociated GSE112555.REST.colorectal-cancer_CRC121_dissociated 56 bp overlap
RFX1 4 datasets
ChIP MCF-7 ENCFF782EZS 187 bp overlap
ChIP MCF-7 ENCFF973QAD 365 bp overlap
ChIP MCF-7 ENCSR066TET.RFX1.MCF-7 392 bp overlap
ChIP MCF-7 ENCSR788XNX.RFX1.MCF-7 304 bp overlap
RNF2 1 dataset
ChIP WA09_heat-shock GSE105028.RNF2.WA09_heat-shock 216 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 125 bp overlap
SAP30 3 datasets
ChIP H1 ENCFF149IOE 331 bp overlap
ChIP H1 ENCFF149IOE 252 bp overlap
ChIP WA01 ENCSR000ATR.SAP30.WA01 392 bp overlap
SCRT1 2 datasets
ChIP HEK293 ENCFF513YVP 278 bp overlap
ChIP HEK293 ENCSR605MGM.SCRT1.HEK293 258 bp overlap
SCRT2 1 dataset
ChIP HEK293 ENCFF711QQB 392 bp overlap
SIN3A 8 datasets
ChIP H1 ENCFF042ZSL 190 bp overlap
ChIP H1 ENCFF042ZSL 317 bp overlap
ChIP H1 ENCFF042ZSL 110 bp overlap
ChIP MCF-7 ENCSR468LUO.SIN3A.MCF-7 392 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 258 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 127 bp overlap
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 144 bp overlap
ChIP hiPSC_IID12 GSE106870.SIN3A.hiPSC_IID12 117 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 319 bp overlap
SMARCA4 4 datasets
ChIP 22Rv1_PTEN-KO GSE115615.SMARCA4.22Rv1_PTEN-KO 241 bp overlap
ChIP A-549_AG15684 GSE132290.SMARCA4.A-549_AG15684 392 bp overlap
ChIP A-549_AG15685 GSE132290.SMARCA4.A-549_AG15685 392 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 305 bp overlap
SMARCB1 2 datasets
ChIP MCF-7_JQ1 GSE123284.SMARCB1.MCF-7_JQ1 80 bp overlap
ChIP hiPSC GSE124903.SMARCB1.hiPSC 179 bp overlap
SNAI2 2 datasets
ChIP SMS-CTR_D48 GSE137168.SNAI2.SMS-CTR_D48 213 bp overlap
ChIP SMS-CTR_shSNAI2 GSE137168.SNAI2.SMS-CTR_shSNAI2 211 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 248 bp overlap
STAT3 2 datasets
ChIP T-47D_JC4757 GSE126004.STAT3.T-47D_JC4757 166 bp overlap
ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 186 bp overlap
SUZ12 1 dataset
ChIP LNCaP GSE39459.SUZ12.LNCaP 85 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 122 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 275 bp overlap
TP53 1 dataset
ChIP hESC_DIFF GSE39912.TP53.hESC_DIFF 333 bp overlap
USF1 1 dataset
ChIP WTC11 ENCFF699QGS 336 bp overlap
YY1 1 dataset
ChIP liver ENCSR994YLZ.YY1.liver 163 bp overlap