chr5 : 139,278,542 139,279,114
572 bp 59 TFs 3 linked genes
This 572 bp open chromatin element is linked to SNORA74A, MATR3, and SNHG4 and is bound by 59 transcription factors.
Linked Genes
3 genes
Distance
Gene Expression Dist. to TSS Distance Link type
SNORA74A at TSS At TSS Proximity
MATR3 4.4 kb Proximal Proximity
SNHG4 4.4 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:139,273,542 – 139,284,114
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
59 transcription factors
Source
Cell type
AR 6 datasets
ChIP LNCaP_Bag-1L_WT_DHT GSE89938.AR.LNCaP_Bag-1L_WT_DHT 142 bp overlap
ChIP LNCaP_FOXA1 ERP003503.AR.LNCaP_FOXA1 199 bp overlap
ChIP LNCaP_SHCTR_DHT GSE62492.AR.LNCaP_SHCTR_DHT 115 bp overlap
ChIP MDA-MB-453_DHT GSE74069.AR.MDA-MB-453_DHT 161 bp overlap
ChIP breast_tumor_Male_10 GSE104399.AR.breast_tumor_Male_10 291 bp overlap
ChIP breast_tumor_Male_28 GSE104399.AR.breast_tumor_Male_28 278 bp overlap
ARID2 1 dataset
ChIP Aska-SS_shSSX GSE108025.ARID2.Aska-SS_shSSX 344 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 348 bp overlap
BRD4 2 datasets
ChIP MDA-MB-231_DMSO GSE116879.BRD4.MDA-MB-231_DMSO 455 bp overlap
ChIP MDA-MB-231_DMSO_rDNA GSE116879.BRD4.MDA-MB-231_DMSO_rDNA 455 bp overlap
CHD1 2 datasets
ChIP H1 ENCFF998XEK 550 bp overlap
ChIP WA01 ENCSR000AQK.CHD1.WA01 572 bp overlap
E2F1 2 datasets
ChIP HeLa GSE22478.E2F1.HeLa 222 bp overlap
ChIP MDA-MB-231 GSE95303.E2F1.MDA-MB-231 121 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 518 bp overlap
EP300 2 datasets
ChIP neural ENCSR843ZUP.EP300.neural 328 bp overlap
ChIP neural cell ENCFF442QNK 224 bp overlap
ERG 2 datasets
ChIP Jurkat GSE49091.ERG.Jurkat 145 bp overlap
ChIP VCaP GSE49091.ERG.VCaP 165 bp overlap
ESR1 12 datasets
ChIP MCF-7_RUNX2_DOX GSE86538.ESR1.MCF-7_RUNX2_DOX 332 bp overlap
ChIP MCF-7_TamR GSE128445.ESR1.MCF-7_TamR 216 bp overlap
ChIP T-47D_PROG GSE68355.ESR1.T-47D_PROG 184 bp overlap
ChIP breast_tumor_BADOUTCOME GSE40867.ESR1.breast_tumor_BADOUTCOME 287 bp overlap
ChIP breast_tumor_Female_6 GSE104399.ESR1.breast_tumor_Female_6 238 bp overlap
ChIP breast_tumor_Male_10 GSE104399.ESR1.breast_tumor_Male_10 276 bp overlap
ChIP breast_tumor_Male_11 GSE104399.ESR1.breast_tumor_Male_11 307 bp overlap
ChIP breast_tumor_Male_14 GSE104399.ESR1.breast_tumor_Male_14 460 bp overlap
ChIP breast_tumor_Male_19 GSE104399.ESR1.breast_tumor_Male_19 330 bp overlap
ChIP breast_tumor_Male_20 GSE104399.ESR1.breast_tumor_Male_20 243 bp overlap
ChIP breast_tumor_Male_26 GSE104399.ESR1.breast_tumor_Male_26 193 bp overlap
ChIP breast_tumor_Male_28 GSE104399.ESR1.breast_tumor_Male_28 363 bp overlap
ETS1 2 datasets
ChIP HEY-A8 GSE101832.ETS1.HEY-A8 572 bp overlap
ChIP OVCAR-8 GSE101832.ETS1.OVCAR-8 269 bp overlap
FOXA1 22 datasets
ChIP LNCaP_DHT GSE28264.FOXA1.LNCaP_DHT 181 bp overlap
ChIP LNCaP_R1881 GSE69043.FOXA1.LNCaP_R1881 121 bp overlap
ChIP LNCaP_SHGATA2_R1881 GSE69043.FOXA1.LNCaP_SHGATA2_R1881 126 bp overlap
ChIP MCF-7 ERP001226.FOXA1.MCF-7 199 bp overlap
ChIP MCF-7-TAMR-1_4OH-Tam GSE75201.FOXA1.MCF-7-TAMR-1_4OH-Tam 181 bp overlap
ChIP MCF-7_E2_TAM ERP000380.FOXA1.MCF-7_E2_TAM 205 bp overlap
ChIP MCF-7_JC4691 GSE126004.FOXA1.MCF-7_JC4691 213 bp overlap
ChIP MCF-7_JC4692 GSE126004.FOXA1.MCF-7_JC4692 214 bp overlap
ChIP MCF-7_JC4693 GSE126004.FOXA1.MCF-7_JC4693 269 bp overlap
ChIP T-47D_E2_TAM ERP000380.FOXA1.T-47D_E2_TAM 264 bp overlap
ChIP T-47D_JC4742 GSE126004.FOXA1.T-47D_JC4742 256 bp overlap
ChIP T-47D_JC4743 GSE126004.FOXA1.T-47D_JC4743 217 bp overlap
ChIP T-47D_JC4747 GSE126004.FOXA1.T-47D_JC4747 195 bp overlap
ChIP T-47D_JC4748 GSE126004.FOXA1.T-47D_JC4748 236 bp overlap
ChIP ZR751 GSE72249.FOXA1.ZR751 326 bp overlap
ChIP ZR751_DEX GSE72249.FOXA1.ZR751_DEX 280 bp overlap
ChIP ZR751_E2 GSE72249.FOXA1.ZR751_E2 303 bp overlap
ChIP ZR751_E2_TAM ERP000380.FOXA1.ZR751_E2_TAM 223 bp overlap
ChIP breast_tumor_Male_14 GSE104399.FOXA1.breast_tumor_Male_14 293 bp overlap
ChIP breast_tumor_Male_19 GSE104399.FOXA1.breast_tumor_Male_19 482 bp overlap
ChIP breast_tumor_Male_4 GSE104399.FOXA1.breast_tumor_Male_4 510 bp overlap
ChIP primary-breast-cancer_B2_DSG GSE114737.FOXA1.primary-breast-cancer_B2_DSG 74 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 572 bp overlap
ChIP DE DE-FOXA2-2 532 bp overlap
GATA3 1 dataset
ChIP breast_tumor_Male_21 GSE104399.GATA3.breast_tumor_Male_21 439 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 549 bp overlap
ChIP DE DE-GATA4-2 409 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 536 bp overlap
ChIP DE DE-GATA6-2 443 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 267 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 425 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 545 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 445 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 566 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 528 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 341 bp overlap
GLYR1 1 dataset
ChIP HeLa GSE20303.GLYR1.HeLa 375 bp overlap
HDAC1 1 dataset
ChIP NB4 GSE126720.HDAC1.NB4 148 bp overlap
HDGF 1 dataset
ChIP K-562 ENCSR197ALX.HDGF.K-562 76 bp overlap
IFNA1 1 dataset
ChIP Huh-7_GFP GSE110511.IFNA1.Huh-7_GFP 572 bp overlap
KMT2A 1 dataset
ChIP IMS-M2_DMSO GSE129636.KMT2A.IMS-M2_DMSO 284 bp overlap
MAX 2 datasets
ChIP K562 ENCFF524IJO 397 bp overlap
ChIP MCF-7 ENCSR000BUL.MAX.MCF-7 121 bp overlap
MLLT1_FKB 2 datasets
ChIP MV4-11 GSE82116.MLLT1_FKB.MV4-11 137 bp overlap
ChIP MV4-11 GSE82116.MLLT1_FKB.MV4-11 212 bp overlap
NCAPH2 2 datasets
ChIP IMR-90_FLAG_OIS GSE118494.NCAPH2.IMR-90_FLAG_OIS 209 bp overlap
ChIP IMR-90_FLAG_OIS GSE118494.NCAPH2.IMR-90_FLAG_OIS 232 bp overlap
NEUROD1 3 datasets
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 572 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 572 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 209 bp overlap
NFATC4 1 dataset
ChIP WTC11 ENCFF744MZI 271 bp overlap
NR3C1 1 dataset
ChIP MDA-MB-453 GSE152203.NR3C1.MDA-MB-453 165 bp overlap
PAF1 1 dataset
ChIP HCT-116_ab20662 GSE97527.PAF1.HCT-116_ab20662 572 bp overlap
PGR 4 datasets
ChIP T-47D_R5020 GSE68355.PGR.T-47D_R5020 235 bp overlap
ChIP breast_tumor_Male_26 GSE104399.PGR.breast_tumor_Male_26 214 bp overlap
ChIP breast_tumor_Male_28 GSE104399.PGR.breast_tumor_Male_28 572 bp overlap
ChIP breast_tumor_Male_30 GSE104399.PGR.breast_tumor_Male_30 371 bp overlap
PHF19 1 dataset
ChIP DU145_CTR GSE135623.PHF19.DU145_CTR 348 bp overlap
PML 1 dataset
ChIP K-562 ENCSR000BQY.PML.K-562 210 bp overlap
POLR2A 18 datasets
ChIP GM12878 ENCFF412KAE 367 bp overlap
ChIP GM12891 ENCFF379FCI 448 bp overlap
ChIP GM12892 ENCFF245LYF 336 bp overlap
ChIP GM12892 ENCFF542ZFO 518 bp overlap
ChIP GM15510 ENCFF880HVJ 437 bp overlap
ChIP GM15510 ENCFF880HVJ 356 bp overlap
ChIP GM23338 ENCFF450WCS 146 bp overlap
ChIP GM23338 ENCFF450WCS 396 bp overlap
ChIP H1 ENCFF833NJP 205 bp overlap
ChIP HeLa-S3 ENCFF045HUU 113 bp overlap
ChIP HeLa-S3 ENCFF773DNG 385 bp overlap
ChIP HepG2 ENCFF252NAR 523 bp overlap
ChIP K562 ENCFF514URW 405 bp overlap
ChIP PFSK-1 ENCFF576NIT 532 bp overlap
ChIP SK-N-MC ENCFF088IVG 435 bp overlap
ChIP SK-N-MC ENCFF088IVG 218 bp overlap
ChIP neural cell ENCFF604SPB 260 bp overlap
ChIP prostate gland ENCFF881OMH 223 bp overlap
POLR2G 1 dataset
ChIP HepG2 ENCFF241AEG 389 bp overlap
PRRX2 1 dataset
ChIP WTC11 ENCFF107JGJ 256 bp overlap
RBFOX2 6 datasets
ChIP HepG2 ENCFF939HTZ 101 bp overlap
ChIP HepG2 ENCFF939HTZ 319 bp overlap
ChIP K-562 GSE120104.RBFOX2.K-562 181 bp overlap
ChIP K-562 ENCSR822LBD.RBFOX2.K-562 169 bp overlap
ChIP K-562 GSE120104.RBFOX2.K-562 55 bp overlap
ChIP K562 ENCFF967GRF 195 bp overlap
RBM22 2 datasets
ChIP HepG2 ENCFF292RVQ 426 bp overlap
ChIP HepG2 ENCFF561IAJ 425 bp overlap
RBM39 2 datasets
ChIP K-562 GSE120104.RBM39.K-562 388 bp overlap
ChIP K-562 ENCSR764OXF.RBM39.K-562 264 bp overlap
SFPQ 1 dataset
ChIP LTAD_EtOH GSE94577.SFPQ.LTAD_EtOH 223 bp overlap
SIRT6 2 datasets
ChIP K-562 ENCSR000AUB.SIRT6.K-562 351 bp overlap
ChIP K562 ENCFF027ETG 277 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 507 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 503 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 398 bp overlap
SMAD5 1 dataset
ChIP K-562 ENCSR000FCD.SMAD5.K-562 572 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 393 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 314 bp overlap
SP1 1 dataset
ChIP K562 ENCFF088XXV 121 bp overlap
STAT1 1 dataset
ChIP FaDu_BB608 GSE78212.STAT1.FaDu_BB608 193 bp overlap
STAT3 1 dataset
ChIP MDA-MB-453 GSE152203.STAT3.MDA-MB-453 181 bp overlap
SUPT5H 8 datasets
ChIP DLD-1_NELFCD-AID_treated GSE144786.SUPT5H.DLD-1_NELFCD-AID_treated 182 bp overlap
ChIP DLD-1_NELFCD-AID_treated GSE144786.SUPT5H.DLD-1_NELFCD-AID_treated 323 bp overlap
ChIP DLD-1_NELFE-AID GSE144786.SUPT5H.DLD-1_NELFE-AID 215 bp overlap
ChIP HCT-116_DMSO GSE138548.SUPT5H.HCT-116_DMSO 572 bp overlap
ChIP HCT-116_pThr806 GSE138548.SUPT5H.HCT-116_pThr806 572 bp overlap
ChIP U2OS_DMSO GSE115365.SUPT5H.U2OS_DMSO 141 bp overlap
ChIP U2OS_siCtrl GSE115365.SUPT5H.U2OS_siCtrl 132 bp overlap
ChIP U2OS_siCtrl GSE115365.SUPT5H.U2OS_siCtrl 216 bp overlap
SUPT6H 1 dataset
ChIP HCT-116_Inhibitor GSE130509.SUPT6H.HCT-116_Inhibitor 316 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 279 bp overlap
TCF7L2 1 dataset
ChIP MDA-MB-453 GSE45201.TCF7L2.MDA-MB-453 269 bp overlap
TLE3 1 dataset
ChIP LNCaP_r1881 GSE94682.TLE3.LNCaP_r1881 192 bp overlap
TOP1 2 datasets
ChIP LNCaP GSE63202.TOP1.LNCaP 306 bp overlap
ChIP LNCaP_DHT GSE63202.TOP1.LNCaP_DHT 317 bp overlap
TP53 1 dataset
ChIP MDA-MB-231 GSE95303.TP53.MDA-MB-231 159 bp overlap
YY1 2 datasets
ChIP Hep-G2_NC GSE120104.YY1.Hep-G2_NC 524 bp overlap
ChIP Huh-7 GSE97411.YY1.Huh-7 260 bp overlap
ZNF341 3 datasets
ChIP HEK293 ENCFF944VMC 143 bp overlap
ChIP HEK293 ENCSR185FOY.ZNF341.HEK293 347 bp overlap
ChIP HEK293 GSE76494.ZNF341.HEK293 251 bp overlap