Transcription factors with Perturb-seq knockdown data for MATR3. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = MATR3 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of MATR3, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr5:139,273,424–139,274,448 | at TSS | At TSS | 843 | |
| chr5:139,277,192–139,277,580 | 3.1 kb | Proximal (<10kb) | 50 | |
| chr5:139,278,542–139,279,114 | 4.4 kb | Proximal (<10kb) | 59 | |
| chr5:139,283,068–139,284,092 | 9.0 kb | Proximal (<10kb) | 194 |
Genomic view of the MATR3 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.