chr5 : 25,006,384 – 25,006,708
324 bp 86 TFs 0 linked genes
This 324 bp open chromatin element has no linked target genes and is bound by 86 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:25,001,384 – 25,011,708
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
86 transcription factors
Source
Cell type
AFF4 1 dataset
ChIP HeLa_DOX GSE40632.AFF4.HeLa_DOX 78 bp overlap
BARX1 2 datasets
Motif DE_12h DE_12h-BARX1_MA0875.2 6 bp overlap
Motif DE_12h DE_12h-BARX1_MA0875.2 6 bp overlap
BRCA1 1 dataset
ChIP HeLa-S3 ENCFF218GPC 240 bp overlap
BRD4 10 datasets
ChIP HeLa GSE151038.BRD4.HeLa 324 bp overlap
ChIP HeLa_JQ1 GSE151038.BRD4.HeLa_JQ1 324 bp overlap
ChIP MDA-MB-231_MGSK2801 GSE116879.BRD4.MDA-MB-231_MGSK2801 65 bp overlap
ChIP MDA-MB-231_MGSK2801_rDNA GSE116879.BRD4.MDA-MB-231_MGSK2801_rDNA 65 bp overlap
ChIP MM1-S_JQ1_150NM GSE49224.BRD4.MM1-S_JQ1_150NM 62 bp overlap
ChIP MOLM-14_DMSO GSE65138.BRD4.MOLM-14_DMSO 77 bp overlap
ChIP SUM159PT_100nMtrametinib_4h GSE87418.BRD4.SUM159PT_100nMtrametinib_4h 80 bp overlap
ChIP SUM159PT_100nMtrametinib_72h GSE87418.BRD4.SUM159PT_100nMtrametinib_72h 240 bp overlap
ChIP SUM159PT_30nMbortezomib_8h GSE87418.BRD4.SUM159PT_30nMbortezomib_8h 55 bp overlap
ChIP SUM159PT_shMYC_dox_48h GSE87418.BRD4.SUM159PT_shMYC_dox_48h 324 bp overlap
BRD9 1 dataset
ChIP MDA-MB-231_MGSK2801 GSE116879.BRD9.MDA-MB-231_MGSK2801 136 bp overlap
BSX 2 datasets
Motif DE_12h DE_12h-BSX_MA0876.2 6 bp overlap
Motif DE_12h DE_12h-BSX_MA0876.2 6 bp overlap
Bcl11B 1 dataset
Motif DE_12h DE_12h-Bcl11B_MA1989.2 9 bp overlap
CEBPB 1 dataset
ChIP HeLa-S3 ENCFF722WEG 159 bp overlap
CTCF 23 datasets
ChIP 22Rv1 ENCSR857PBV.CTCF.22Rv1 126 bp overlap
ChIP 22Rv1_hydroxy_10nM_4h ENCSR847XGE.CTCF.22Rv1_hydroxy_10nM_4h 115 bp overlap
ChIP A-673 ENCSR611JJS.CTCF.A-673 156 bp overlap
ChIP C4-2B ENCFF821XVN 244 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 63 bp overlap
ChIP KMS-11 ENCFF853JKX 58 bp overlap
ChIP LNCaP-C4-2B ENCSR460LGH.CTCF.LNCaP-C4-2B 124 bp overlap
ChIP Panc1 ENCFF056JQX 87 bp overlap
ChIP RWPE-2 ENCSR856JJB.CTCF.RWPE-2 181 bp overlap
ChIP RWPE2 ENCFF911IEE 200 bp overlap
ChIP SLK_Ctrl GSE138105.CTCF.SLK_Ctrl 166 bp overlap
ChIP T-47D_D538G GSE148277.CTCF.T-47D_D538G 71 bp overlap
ChIP THP-1_Pam3csk-030m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-030m-Flavo-000m 70 bp overlap
ChIP THP-1_Pam3csk-060m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-060m-Flavo-000m 60 bp overlap
ChIP VCaP ENCFF858YQT 70 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF265AZL 114 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF433UFM 51 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF835ZSJ 69 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 98 bp overlap
ChIP glutamatergic neuron ENCFF816BTR 105 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 122 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 324 bp overlap
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 81 bp overlap
DAXX 1 dataset
ChIP PC-3 GSE68647.DAXX.PC-3 307 bp overlap
DLX1 2 datasets
Motif DE_12h DE_12h-DLX1_MA0879.3 6 bp overlap
Motif DE_12h DE_12h-DLX1_MA0879.3 6 bp overlap
DLX6 2 datasets
Motif DE_12h DE_12h-DLX6_MA0882.2 6 bp overlap
Motif DE_12h DE_12h-DLX6_MA0882.2 6 bp overlap
Dlx3 2 datasets
Motif DE_12h DE_12h-Dlx3_MA0880.2 6 bp overlap
Motif DE_12h DE_12h-Dlx3_MA0880.2 6 bp overlap
Dlx4 2 datasets
Motif DE_12h DE_12h-Dlx4_MA0881.2 6 bp overlap
Motif DE_12h DE_12h-Dlx4_MA0881.2 6 bp overlap
ELL2 1 dataset
ChIP HeLa_DOX GSE40632.ELL2.HeLa_DOX 73 bp overlap
EN2 1 dataset
Motif DE_12h DE_12h-EN2_MA0642.3 7 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 165 bp overlap
EP300 5 datasets
ChIP HeLa-S3 ENCFF089VPQ 90 bp overlap
ChIP HeLa-S3 ENCFF089VPQ 247 bp overlap
ChIP HeLa-S3 ENCFF245KNK 219 bp overlap
ChIP HeLa-S3 ENCSR000ECV.EP300.HeLa-S3 236 bp overlap
ChIP HeLa-S3 ENCSR680OFU.EP300.HeLa-S3 187 bp overlap
FOS 4 datasets
Motif DE_12h DE_12h-FOS_MA0476.2 8 bp overlap
ChIP HeLa-S3 ENCFF829XRF 150 bp overlap
ChIP HeLa-S3 ENCSR000EZE.FOS.HeLa-S3 130 bp overlap
ChIP MCF-10A ENCSR000DON.FOS.MCF-10A 96 bp overlap
FOSL1::JUND 1 dataset
Motif DE_12h DE_12h-FOSL1JUND_MA1142.2 8 bp overlap
FOSL2 1 dataset
Motif DE_12h DE_12h-FOSL2_MA0478.2 10 bp overlap
FOXA1 2 datasets
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 177 bp overlap
ChIP PDAC_KOKLF5 GSE64557.FOXA1.PDAC_KOKLF5 149 bp overlap
FOXA2 5 datasets
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 109 bp overlap
ChIP CFPAC-1_HNF1B-KO GSE119930.FOXA2.CFPAC-1_HNF1B-KO 145 bp overlap
ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 226 bp overlap
ChIP KerCT GSE90454.FOXA2.KerCT 191 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 138 bp overlap
GATA6 5 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 262 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 256 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 205 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 263 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 274 bp overlap
GBX1 1 dataset
Motif DE_12h DE_12h-GBX1_MA0889.2 7 bp overlap
GBX2 2 datasets
Motif DE_12h DE_12h-GBX2_MA0890.2 6 bp overlap
Motif DE_12h DE_12h-GBX2_MA0890.2 6 bp overlap
HESX1 2 datasets
Motif DE_12h DE_12h-HESX1_MA0894.2 6 bp overlap
Motif DE_12h DE_12h-HESX1_MA0894.2 6 bp overlap
HOXA7 2 datasets
Motif DE_12h DE_12h-HOXA7_MA1498.3 6 bp overlap
Motif DE_12h DE_12h-HOXA7_MA1498.3 6 bp overlap
HOXB8 1 dataset
ChIP CFPAC-1_HOXB8-OE GSE119930.HOXB8.CFPAC-1_HOXB8-OE 324 bp overlap
HOXC6 1 dataset
ChIP 22Rv1 GSE129951.HOXC6.22Rv1 324 bp overlap
Hmx1 1 dataset
Motif DE_12h DE_12h-Hmx1_MA0896.2 9 bp overlap
Hmx2 1 dataset
Motif DE_12h DE_12h-Hmx2_MA0897.2 15 bp overlap
Hmx3 1 dataset
Motif DE_12h DE_12h-Hmx3_MA0898.2 9 bp overlap
JUN 6 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 239 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 259 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 112 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 274 bp overlap
ChIP HeLa-S3 ENCFF668QVP 218 bp overlap
ChIP HeLa-S3 ENCSR000EDG.JUN.HeLa-S3 136 bp overlap
JUNB 1 dataset
ChIP MCF10A-Er-Src_EtOH GSE115597.JUNB.MCF10A-Er-Src_EtOH 82 bp overlap
JUND 2 datasets
ChIP HeLa-S3 ENCFF642OHL 192 bp overlap
ChIP HeLa-S3 ENCSR000EDH.JUND.HeLa-S3 215 bp overlap
Jun 1 dataset
Motif DE_12h DE_12h-Jun_MA0489.3 8 bp overlap
KMT2A 1 dataset
ChIP THP-1 GSE79899.KMT2A.THP-1 137 bp overlap
LBX1 1 dataset
Motif DE_12h DE_12h-LBX1_MA0618.2 7 bp overlap
LBX2 2 datasets
Motif DE_12h DE_12h-LBX2_MA0699.2 6 bp overlap
Motif DE_12h DE_12h-LBX2_MA0699.2 6 bp overlap
LHX2 2 datasets
Motif DE_12h DE_12h-LHX2_MA0700.3 6 bp overlap
Motif DE_12h DE_12h-LHX2_MA0700.3 6 bp overlap
LHX9 1 dataset
Motif DE_12h DE_12h-LHX9_MA0701.3 7 bp overlap
MAFB 1 dataset
ChIP islet ERP004003.MAFB.islet 110 bp overlap
MAFF 2 datasets
ChIP HeLa-S3 ENCFF783SBT 114 bp overlap
ChIP HeLa-S3 ENCSR140DSL.MAFF.HeLa-S3 134 bp overlap
MAFK 2 datasets
ChIP HeLa-S3 ENCFF304XGR 168 bp overlap
ChIP HeLa-S3 ENCSR000ECK.MAFK.HeLa-S3 75 bp overlap
MAX 1 dataset
ChIP HeLa-S3 ENCSR000EZF.MAX.HeLa-S3 283 bp overlap
MLXIP 2 datasets
ChIP HeLa GSE125089.MLXIP.HeLa 324 bp overlap
ChIP HeLa_Acidic GSE125089.MLXIP.HeLa_Acidic 283 bp overlap
MSX1 2 datasets
Motif DE_12h DE_12h-MSX1_MA0666.3 6 bp overlap
Motif DE_12h DE_12h-MSX1_MA0666.3 6 bp overlap
MSX2 2 datasets
Motif DE_12h DE_12h-MSX2_MA0708.3 6 bp overlap
Motif DE_12h DE_12h-MSX2_MA0708.3 6 bp overlap
Msx3 2 datasets
Motif DE_12h DE_12h-Msx3_MA0709.2 6 bp overlap
Motif DE_12h DE_12h-Msx3_MA0709.2 6 bp overlap
NELFE 2 datasets
ChIP HeLa GSE125534.NELFE.HeLa 324 bp overlap
ChIP HeLa_DOX GSE125534.NELFE.HeLa_DOX 236 bp overlap
NFE2L2 1 dataset
ChIP HeLa-S3 ENCSR707IUN.NFE2L2.HeLa-S3 97 bp overlap
NR4A1 1 dataset
Motif DE_12h DE_12h-NR4A1_MA1112.3 8 bp overlap
NR4A2 1 dataset
Motif DE_12h DE_12h-NR4A2_MA0160.3 8 bp overlap
NUTM1 1 dataset
ChIP NUT_DMSO GSE133122.NUTM1.NUT_DMSO 138 bp overlap
Nobox 2 datasets
Motif DE_12h DE_12h-Nobox_MA0125.2 6 bp overlap
Motif DE_12h DE_12h-Nobox_MA0125.2 6 bp overlap
PDX1 1 dataset
ChIP islet ERP001456.PDX1.islet 113 bp overlap
POLR3A 1 dataset
ChIP HeLa-S3 ENCFF777TAS 324 bp overlap
POU4F1 1 dataset
Motif DE_12h DE_12h-POU4F1_MA0790.2 12 bp overlap
POU4F2 1 dataset
Motif DE_12h DE_12h-POU4F2_MA0683.2 15 bp overlap
POU4F3 1 dataset
Motif DE_12h DE_12h-POU4F3_MA0791.2 12 bp overlap
PPARA::RXRA 1 dataset
Motif DE_12h DE_12h-PPARARXRA_MA1148.2 17 bp overlap
PRDM1 2 datasets
ChIP HeLa-S3 ENCFF893HDJ 260 bp overlap
ChIP HeLa-S3 ENCSR000ECY.PRDM1.HeLa-S3 235 bp overlap
PRRX2 1 dataset
Motif DE_12h DE_12h-PRRX2_MA0075.4 7 bp overlap
RAD21 6 datasets
ChIP HAP1 GSE126634.RAD21.HAP1 197 bp overlap
ChIP HEK293_siCtrl GSE130135.RAD21.HEK293_siCtrl 162 bp overlap
ChIP HeLa-S3 ENCFF775CHI 154 bp overlap
ChIP HeLa-Tet-On GSE112028.RAD21.HeLa-Tet-On 70 bp overlap
ChIP SLK_Ctrl GSE138105.RAD21.SLK_Ctrl 288 bp overlap
ChIP THP-1_eGFP-IFNb GSE103477.RAD21.THP-1_eGFP-IFNb 89 bp overlap
RAX 2 datasets
Motif DE_12h DE_12h-RAX_MA0718.2 6 bp overlap
Motif DE_12h DE_12h-RAX_MA0718.2 6 bp overlap
RCOR1 1 dataset
ChIP HeLa-S3 ENCFF471KYI 263 bp overlap
RELA 1 dataset
ChIP HeLa-B2_GRKD_DMSO GSE24518.RELA.HeLa-B2_GRKD_DMSO 109 bp overlap
RFX5 2 datasets
ChIP HeLa-S3 ENCFF703XPB 200 bp overlap
ChIP HeLa-S3 ENCSR000ECX.RFX5.HeLa-S3 159 bp overlap
RXRB 1 dataset
Motif DE_12h DE_12h-RXRB_MA1555.1 14 bp overlap
Runx1 1 dataset
Motif DE_12h DE_12h-Runx1_MA0002.3 9 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 175 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 324 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 317 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 170 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 249 bp overlap
SMARCA4 4 datasets
ChIP A-549_AG15686 GSE132290.SMARCA4.A-549_AG15686 193 bp overlap
ChIP A-549_AG15720 GSE132290.SMARCA4.A-549_AG15720 86 bp overlap
ChIP A-549_AG15725 GSE132290.SMARCA4.A-549_AG15725 99 bp overlap
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 324 bp overlap
SMC3 11 datasets
ChIP HeLa GSE126990.SMC3.HeLa 52 bp overlap
ChIP HeLa GSE126990.SMC3.HeLa 208 bp overlap
ChIP HeLa-Kyoto GSE102884.SMC3.HeLa-Kyoto 52 bp overlap
ChIP HeLa-Kyoto GSE138405.SMC3.HeLa-Kyoto 52 bp overlap
ChIP HeLa-Kyoto GSE102884.SMC3.HeLa-Kyoto 208 bp overlap
ChIP HeLa-Kyoto GSE138405.SMC3.HeLa-Kyoto 208 bp overlap
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.SMC3.HeLa-Kyoto_PDS5-depleted 146 bp overlap
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.SMC3.HeLa-Kyoto_WAPL_PDS-depleted 269 bp overlap
ChIP HeLa-Kyoto_WT GSE138405.SMC3.HeLa-Kyoto_WT 50 bp overlap
ChIP HeLa-S3 ENCFF992MML 122 bp overlap
ChIP HeLa-S3 ENCSR000ECS.SMC3.HeLa-S3 70 bp overlap
SOX10 1 dataset
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
SOX2 1 dataset
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 161 bp overlap
STAG1 2 datasets
ChIP HeLa GSE126990.STAG1.HeLa 324 bp overlap
ChIP HeLa-Kyoto GSE138405.STAG1.HeLa-Kyoto 324 bp overlap
STAG2 1 dataset
ChIP OCI-AML-3 GSE111537.STAG2.OCI-AML-3 203 bp overlap
STAT3 4 datasets
ChIP HeLa-S3 ENCFF655DGU 218 bp overlap
ChIP HeLa-S3 ENCSR000EDC.STAT3.HeLa-S3 160 bp overlap
ChIP MCF-7_jc5842 GSE126004.STAT3.MCF-7_jc5842 78 bp overlap
ChIP MDA-MB-157_EtOH GSE85579.STAT3.MDA-MB-157_EtOH 150 bp overlap
Sox11 1 dataset
Motif DE_12h DE_12h-Sox11_MA0869.3 8 bp overlap
Stat4 1 dataset
Motif DE_12h DE_12h-Stat4_MA0518.2 10 bp overlap
Stat5a 1 dataset
Motif DE_12h DE_12h-Stat5a_MA1624.2 9 bp overlap
TAF1 1 dataset
ChIP HeLa-S3 ENCFF556LCN 304 bp overlap
TBP 1 dataset
ChIP HeLa-S3 ENCFF715NNJ 234 bp overlap
TCF7L2 2 datasets
Motif DE_12h DE_12h-TCF7L2_MA0523.2 9 bp overlap
ChIP HeLa-S3 ENCFF673QAB 266 bp overlap
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