chr4 : 142,559,929 – 142,560,542
613 bp 65 TFs 0 linked genes
This 613 bp open chromatin element has no linked target genes and is bound by 65 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:142,554,929 – 142,565,542
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
65 transcription factors
Source
Cell type
AR 10 datasets
ChIP LNCaP_androgen-N_hypoxia-Y GSE114732.AR.LNCaP_androgen-N_hypoxia-Y 148 bp overlap
ChIP MCF-7 ERP001226.AR.MCF-7 157 bp overlap
ChIP MDA-MB-453 ERP001226.AR.MDA-MB-453 138 bp overlap
ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 248 bp overlap
ChIP MDA-MB-453_MPA GSE74069.AR.MDA-MB-453_MPA 190 bp overlap
ChIP MDA-MB-453_R1881_SICTR GSE70161.AR.MDA-MB-453_R1881_SICTR 169 bp overlap
ChIP MDA-MB-453_R1881_SIPIAS1 GSE70161.AR.MDA-MB-453_R1881_SIPIAS1 179 bp overlap
ChIP breast-cancer_ENOB-2854 GSE128018.AR.breast-cancer_ENOB-2854 238 bp overlap
ChIP prostate-cancer_PDX_167 GSE130408.AR.prostate-cancer_PDX_167 136 bp overlap
ChIP prostate-cancer_PDX_92 GSE130408.AR.prostate-cancer_PDX_92 117 bp overlap
ARID1A 1 dataset
ChIP MCF-7_4-hydroxytamoxifen GSE123284.ARID1A.MCF-7_4-hydroxytamoxifen 315 bp overlap
BRD4 1 dataset
ChIP CHL-1 GSE95585.BRD4.CHL-1 613 bp overlap
BRD9 1 dataset
ChIP G-401 GSE120234.BRD9.G-401 361 bp overlap
CDK7 1 dataset
ChIP SK-MEL-147 GSE45984.CDK7.SK-MEL-147 493 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 295 bp overlap
CREBBP 1 dataset
ChIP PC-3_GDC-resist GSE147455.CREBBP.PC-3_GDC-resist 119 bp overlap
CTCF 1 dataset
Motif DE_36h DE_36h-CTCF_MA1929.2 31 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF460KDD 251 bp overlap
Crx 2 datasets
Motif DE_36h DE_36h-Crx_MA0467.3 6 bp overlap
Motif DE_60h DE_60h-Crx_MA0467.3 6 bp overlap
Dmbx1 2 datasets
Motif DE_36h DE_36h-Dmbx1_MA0883.2 10 bp overlap
Motif DE_60h DE_60h-Dmbx1_MA0883.2 10 bp overlap
Dux 2 datasets
Motif DE_36h DE_36h-Dux_MA0611.3 11 bp overlap
Motif DE_60h DE_60h-Dux_MA0611.3 11 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 163 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 303 bp overlap
ESR1 41 datasets
ChIP MCF-7 GSE117492.ESR1.MCF-7 329 bp overlap
ChIP MCF-7 GSE128445.ESR1.MCF-7 269 bp overlap
ChIP MCF-7 GSE68355.ESR1.MCF-7 191 bp overlap
ChIP MCF-7 GSE76893.ESR1.MCF-7 197 bp overlap
ChIP MCF-7 GSE103023.ESR1.MCF-7 247 bp overlap
ChIP MCF-7 GSE41561.ESR1.MCF-7 157 bp overlap
ChIP MCF-7_1-6-HD GSE117492.ESR1.MCF-7_1-6-HD 305 bp overlap
ChIP MCF-7_4OH-Tam GSE117941.ESR1.MCF-7_4OH-Tam 226 bp overlap
ChIP MCF-7_D538G GSE148277.ESR1.MCF-7_D538G 288 bp overlap
ChIP MCF-7_D538G_DMSO GSE148277.ESR1.MCF-7_D538G_DMSO 288 bp overlap
ChIP MCF-7_DMSO GSE125594.ESR1.MCF-7_DMSO 221 bp overlap
ChIP MCF-7_E2+4OHT GSE119702.ESR1.MCF-7_E2+4OHT 202 bp overlap
ChIP MCF-7_E2+4OHT_SRC-3 GSE119702.ESR1.MCF-7_E2+4OHT_SRC-3 333 bp overlap
ChIP MCF-7_E2_45m GSE67295.ESR1.MCF-7_E2_45m 347 bp overlap
ChIP MCF-7_EtOH GSE136673.ESR1.MCF-7_EtOH 185 bp overlap
ChIP MCF-7_EtOH_KO GSE136673.ESR1.MCF-7_EtOH_KO 169 bp overlap
ChIP MCF-7_G6274 GSE117941.ESR1.MCF-7_G6274 232 bp overlap
ChIP MCF-7_GDC-0927 GSE117941.ESR1.MCF-7_GDC-0927 176 bp overlap
ChIP MCF-7_ICI GSE125594.ESR1.MCF-7_ICI 255 bp overlap
ChIP MCF-7_LY2_ETOH GSE54592.ESR1.MCF-7_LY2_ETOH 319 bp overlap
ChIP MCF-7_OHT GSE119702.ESR1.MCF-7_OHT 202 bp overlap
ChIP MCF-7_PROG GSE68355.ESR1.MCF-7_PROG 223 bp overlap
ChIP MCF-7_R5020 GSE68355.ESR1.MCF-7_R5020 212 bp overlap
ChIP MCF-7_RAD001 GSE103023.ESR1.MCF-7_RAD001 268 bp overlap
ChIP MCF-7_SRC3_OHT GSE119702.ESR1.MCF-7_SRC3_OHT 333 bp overlap
ChIP MCF-7_TNFa_45m GSE67295.ESR1.MCF-7_TNFa_45m 207 bp overlap
ChIP MCF-7_Tamoxifen GSE115607.ESR1.MCF-7_Tamoxifen 185 bp overlap
ChIP MCF-7_Veh_sc GSE117569.ESR1.MCF-7_Veh_sc 381 bp overlap
ChIP MCF-7_Y537S_DMSO GSE148277.ESR1.MCF-7_Y537S_DMSO 251 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.ESR1.MCF-7_parental_4-hydroxytamoxifen 165 bp overlap
ChIP MCF-7_shCtrl GSE125594.ESR1.MCF-7_shCtrl 289 bp overlap
ChIP MCF-7_shFbxo GSE119702.ESR1.MCF-7_shFbxo 121 bp overlap
ChIP MCF-7_shFbxo_E2 GSE119702.ESR1.MCF-7_shFbxo_E2 121 bp overlap
ChIP MCF-7_shFbxo_E2_4OHT GSE119702.ESR1.MCF-7_shFbxo_E2_4OHT 157 bp overlap
ChIP MCF-7_shFbxo_OHT GSE119702.ESR1.MCF-7_shFbxo_OHT 157 bp overlap
ChIP MCF-7_shTEAD4 GSE125594.ESR1.MCF-7_shTEAD4 291 bp overlap
ChIP MCF-7_shYAP1 GSE125594.ESR1.MCF-7_shYAP1 266 bp overlap
ChIP MCF-7_talen GSE94493.ESR1.MCF-7_talen 166 bp overlap
ChIP breast-cancer_3487 GSE126004.ESR1.breast-cancer_3487 181 bp overlap
ChIP breast-cancer_S440-2187 GSE128018.ESR1.breast-cancer_S440-2187 249 bp overlap
ChIP pleural-effusion GSE86538.ESR1.pleural-effusion 205 bp overlap
ESR1_Y537S 1 dataset
ChIP MCF-7_E2 GSE94493.ESR1_Y537S.MCF-7_E2 282 bp overlap
ESR1_pS118 1 dataset
ChIP MCF-7_E2_sc GSE117569.ESR1_pS118.MCF-7_E2_sc 249 bp overlap
ETV1 1 dataset
ChIP LNCaP GSE47120.ETV1.LNCaP 221 bp overlap
EWSR1-FLI1 2 datasets
Motif DE_36h DE_36h-EWSR1-FLI1_MA0149.1 18 bp overlap
Motif DE_60h DE_60h-EWSR1-FLI1_MA0149.1 18 bp overlap
FOXA1 15 datasets
ChIP LNCaP_FENG_shFOXA1_Ethanol GSE128883.FOXA1.LNCaP_FENG_shFOXA1_Ethanol 268 bp overlap
ChIP MCF-7 GSE81714.FOXA1.MCF-7 272 bp overlap
ChIP MCF-7 GSE128445.FOXA1.MCF-7 253 bp overlap
ChIP MCF-7 ERP001226.FOXA1.MCF-7 130 bp overlap
ChIP MCF-7_E2 GSE60270.FOXA1.MCF-7_E2 124 bp overlap
ChIP MCF-7_estrogen_ab2 GSE112969.FOXA1.MCF-7_estrogen_ab2 80 bp overlap
ChIP MCF-7_vehicle_ab2 GSE112969.FOXA1.MCF-7_vehicle_ab2 143 bp overlap
ChIP T-47D_JC4748 GSE126004.FOXA1.T-47D_JC4748 266 bp overlap
ChIP breast-cancer_3487 GSE126004.FOXA1.breast-cancer_3487 261 bp overlap
ChIP breast-cancer_ENOB-2849 GSE128018.FOXA1.breast-cancer_ENOB-2849 275 bp overlap
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 418 bp overlap
ChIP breast-cancer_Veh-2858 GSE128018.FOXA1.breast-cancer_Veh-2858 296 bp overlap
ChIP breast-cancer_Veh-2860 GSE128018.FOXA1.breast-cancer_Veh-2860 313 bp overlap
ChIP breast_tumor_Female_2 GSE104399.FOXA1.breast_tumor_Female_2 180 bp overlap
ChIP primary-breast-cancer_B2_DSG GSE114737.FOXA1.primary-breast-cancer_B2_DSG 260 bp overlap
FOXA2 5 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 246 bp overlap
ChIP BJ1-hTERT_Mimo GSE92491.FOXA2.BJ1-hTERT_Mimo 89 bp overlap
ChIP BJ1-hTERT_MimosinePlus GSE90454.FOXA2.BJ1-hTERT_MimosinePlus 89 bp overlap
ChIP DE DE-FOXA2-1 397 bp overlap
ChIP DE DE-FOXA2-2 500 bp overlap
GATA2 5 datasets
ChIP ESF GSE108408.GATA2.ESF 276 bp overlap
ChIP LNCaP GSE38391.GATA2.LNCaP 207 bp overlap
ChIP LNCaP GSE52725.GATA2.LNCaP 207 bp overlap
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 179 bp overlap
ChIP SKH1 GSE87283.GATA2.SKH1 239 bp overlap
GATA3 11 datasets
ChIP MCF-7 ENCFF352QVM 331 bp overlap
ChIP MCF-7 GSE117492.GATA3.MCF-7 307 bp overlap
ChIP MCF-7 GSE133072.GATA3.MCF-7 255 bp overlap
ChIP MCF-7 GSE51274.GATA3.MCF-7 289 bp overlap
ChIP MCF-7_E2 GSE81510.GATA3.MCF-7_E2 284 bp overlap
ChIP MCF-7_E2 GSE40129.GATA3.MCF-7_E2 178 bp overlap
ChIP MCF-7_E2 GSE60270.GATA3.MCF-7_E2 293 bp overlap
ChIP MCF-7_E2_Dex GSE81510.GATA3.MCF-7_E2_Dex 291 bp overlap
ChIP MCF-7_ICI GSE81510.GATA3.MCF-7_ICI 222 bp overlap
ChIP MCF-7_sgScr GSE133072.GATA3.MCF-7_sgScr 175 bp overlap
ChIP T-47D ENCSR000BMX.GATA3.T-47D 300 bp overlap
GATA4 5 datasets
ChIP BJ1-hTERT GSE92491.GATA4.BJ1-hTERT 244 bp overlap
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 249 bp overlap
ChIP DE DE-GATA4-1 328 bp overlap
ChIP DE DE-GATA4-2 372 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 277 bp overlap
GATA6 7 datasets
ChIP DE DE-GATA6-2 379 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 292 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 411 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 322 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 412 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 354 bp overlap
ChIP OACP4-C GSE132680.GATA6.OACP4-C 236 bp overlap
GSC 2 datasets
Motif DE_36h DE_36h-GSC_MA0648.2 6 bp overlap
Motif DE_60h DE_60h-GSC_MA0648.2 6 bp overlap
GSC2 2 datasets
Motif DE_36h DE_36h-GSC2_MA0891.2 6 bp overlap
Motif DE_60h DE_60h-GSC2_MA0891.2 6 bp overlap
HOXB13 2 datasets
ChIP G-401 GSE65381.HOXB13.G-401 530 bp overlap
ChIP prostate-cancer_PDX_167 GSE130408.HOXB13.prostate-cancer_PDX_167 240 bp overlap
KLF12 2 datasets
Motif DE_36h DE_36h-KLF12_MA0742.2 9 bp overlap
Motif DE_60h DE_60h-KLF12_MA0742.2 9 bp overlap
MAF::NFE2 1 dataset
Motif DE_36h DE_36h-MAFNFE2_MA0501.2 11 bp overlap
MAFG::NFE2L1 1 dataset
Motif DE_36h DE_36h-MAFGNFE2L1_MA0089.3 11 bp overlap
MED1 2 datasets
ChIP MCF-7_SHRARS GSE60270.MED1.MCF-7_SHRARS 302 bp overlap
ChIP MCF-7_SHRARS_E2 GSE60270.MED1.MCF-7_SHRARS_E2 164 bp overlap
MEIS1 1 dataset
Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap
MXI1 2 datasets
Motif DE_36h DE_36h-MXI1_MA1108.3 6 bp overlap
Motif DE_60h DE_60h-MXI1_MA1108.3 6 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 257 bp overlap
MYC 1 dataset
ChIP G-401_EGFP GSE109310.MYC.G-401_EGFP 294 bp overlap
Mecom 1 dataset
Motif DE_36h DE_36h-Mecom_MA0029.2 11 bp overlap
NR3C1 4 datasets
ChIP MCF-7 GSE152203.NR3C1.MCF-7 252 bp overlap
ChIP MCF-7_E2_Dex GSE81510.NR3C1.MCF-7_E2_Dex 288 bp overlap
ChIP MCF-7_ICI_Dex GSE81510.NR3C1.MCF-7_ICI_Dex 308 bp overlap
ChIP T47D-A1-2_Dex GSE112491.NR3C1.T47D-A1-2_Dex 153 bp overlap
NR3C1_mut 1 dataset
ChIP MCF-7_ICI_Dex GSE81510.NR3C1_mut.MCF-7_ICI_Dex 303 bp overlap
Nfe2l2 1 dataset
Motif DE_36h DE_36h-Nfe2l2_MA0150.3 11 bp overlap
OTX1 2 datasets
Motif DE_36h DE_36h-OTX1_MA0711.2 6 bp overlap
Motif DE_60h DE_60h-OTX1_MA0711.2 6 bp overlap
OTX2 1 dataset
ChIP retina_pigment GSE60024.OTX2.retina_pigment 323 bp overlap
PAX6 1 dataset
ChIP retina_pigment GSE60024.PAX6.retina_pigment 252 bp overlap
PGR 1 dataset
ChIP MCF-7_PROG GSE68355.PGR.MCF-7_PROG 189 bp overlap
PITX1 2 datasets
Motif DE_36h DE_36h-PITX1_MA0682.3 6 bp overlap
Motif DE_60h DE_60h-PITX1_MA0682.3 6 bp overlap
PITX2 2 datasets
Motif DE_36h DE_36h-PITX2_MA1547.2 8 bp overlap
Motif DE_60h DE_60h-PITX2_MA1547.2 8 bp overlap
PITX3 2 datasets
Motif DE_36h DE_36h-PITX3_MA0714.2 6 bp overlap
Motif DE_60h DE_60h-PITX3_MA0714.2 6 bp overlap
RHOXF1 2 datasets
Motif DE_36h DE_36h-RHOXF1_MA0719.2 6 bp overlap
Motif DE_60h DE_60h-RHOXF1_MA0719.2 6 bp overlap
RORA 1 dataset
Motif DE_36h DE_36h-RORA_MA0071.1 10 bp overlap
RUNX1T1 1 dataset
ChIP CD34 GSE80773.RUNX1T1.CD34 174 bp overlap
SIN3A 2 datasets
ChIP MCF-7 ENCFF521RDC 354 bp overlap
ChIP MCF-7 ENCSR000BUM.SIN3A.MCF-7 380 bp overlap
SMAD2_3 1 dataset
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 354 bp overlap
SMARCB1 1 dataset
ChIP MCF-7_estrogen GSE123284.SMARCB1.MCF-7_estrogen 283 bp overlap
SMC1A 1 dataset
ChIP MCF-7_EtOH GSE115602.SMC1A.MCF-7_EtOH 142 bp overlap
SP2 2 datasets
Motif DE_36h DE_36h-SP2_MA0516.3 9 bp overlap
Motif DE_60h DE_60h-SP2_MA0516.3 9 bp overlap
STAT3 1 dataset
ChIP breast-cancer_3487 GSE126004.STAT3.breast-cancer_3487 168 bp overlap
TFAP2A 1 dataset
ChIP MCF-7_E2 GSE60270.TFAP2A.MCF-7_E2 201 bp overlap
TFAP2C 2 datasets
Motif DE_36h DE_36h-TFAP2C_MA0814.3 9 bp overlap
Motif DE_60h DE_60h-TFAP2C_MA0814.3 9 bp overlap
USF1 2 datasets
Motif DE_36h DE_36h-USF1_MA0093.4 10 bp overlap
Motif DE_60h DE_60h-USF1_MA0093.4 10 bp overlap
YY1 1 dataset
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 358 bp overlap
YY1AP1 2 datasets
ChIP MCF-7_E2 GSE125594.YY1AP1.MCF-7_E2 244 bp overlap
ChIP MCF-7_Veh GSE125594.YY1AP1.MCF-7_Veh 249 bp overlap
ZKSCAN5 1 dataset
Motif DE_36h DE_36h-ZKSCAN5_MA1652.2 9 bp overlap
ZNF331 1 dataset
Motif DE_36h DE_36h-ZNF331_MA1726.2 10 bp overlap
ZNF770 2 datasets
Motif DE_36h DE_36h-ZNF770_MA2099.1 8 bp overlap
Motif DE_60h DE_60h-ZNF770_MA2099.1 8 bp overlap
ZSCAN16 1 dataset
ChIP HEK293 GSE76494.ZSCAN16.HEK293 173 bp overlap
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