chr4 : 89,994,625 – 89,995,449
824 bp 61 TFs 1 linked gene
This 824 bp open chromatin element is linked to ENSG00000287239 and is bound by 61 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000287239 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:89,989,625 – 90,000,449
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
61 transcription factors
Source
Cell type
AR 5 datasets
ChIP VCaP_DHAT_2H GSE28950.AR.VCaP_DHAT_2H 190 bp overlap
ChIP VCaP_DHT24H_SHFOXP1 GSE58428.AR.VCaP_DHT24H_SHFOXP1 328 bp overlap
ChIP VCaP_R1881_4H GSE84432.AR.VCaP_R1881_4H 145 bp overlap
ChIP VCaP_shERG GSE110655.AR.VCaP_shERG 94 bp overlap
ChIP prostate-cancer_PDX_189-4 GSE130408.AR.prostate-cancer_PDX_189-4 171 bp overlap
ARID3A 1 dataset
ChIP Hep-G2 ENCSR000EDP.ARID3A.Hep-G2 192 bp overlap
ARID5B 1 dataset
ChIP HepG2 ENCFF964FWK 262 bp overlap
ASH2L 3 datasets
ChIP Hep-G2 ENCSR508LMH.ASH2L.Hep-G2 396 bp overlap
ChIP HepG2 ENCFF207QHL 320 bp overlap
ChIP HepG2 ENCFF207QHL 538 bp overlap
BAF155 2 datasets
ChIP VCaP_shARID1A GSE110655.BAF155.VCaP_shARID1A 80 bp overlap
ChIP VCaP_shERG GSE110655.BAF155.VCaP_shERG 292 bp overlap
BRD4 1 dataset
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 227 bp overlap
CDX2 2 datasets
ChIP Caco-2_DIFF GSE23436.CDX2.Caco-2_DIFF 172 bp overlap
ChIP adult-duodenal-cell GSE115314.CDX2.adult-duodenal-cell 201 bp overlap
CEBPA 2 datasets
ChIP Hep-G2 ERP000209.CEBPA.Hep-G2 174 bp overlap
ChIP HepG2 ENCFF175DFS 80 bp overlap
CEBPB 1 dataset
ChIP Hep-G2 ENCSR000EEX.CEBPB.Hep-G2 121 bp overlap
CREM 1 dataset
ChIP Hep-G2 ENCSR903ELW.CREM.Hep-G2 215 bp overlap
EBF1 3 datasets
ChIP GM12878 ENCFF167CZS 220 bp overlap
ChIP GM12878 ENCSR000DZQ.EBF1.GM12878 122 bp overlap
ChIP NALM-6 GSE126300.EBF1.NALM-6 132 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 156 bp overlap
EP300 2 datasets
ChIP Hep-G2 ENCSR000BLW.EP300.Hep-G2 275 bp overlap
ChIP HepG2 ENCFF354ACD 245 bp overlap
ESR1 1 dataset
ChIP primary-endometrium-cancer_E1_DSG GSE114737.ESR1.primary-endometrium-cancer_E1_DSG 631 bp overlap
FOXA1 35 datasets
ChIP 22Rv1 GSE96652.FOXA1.22Rv1 93 bp overlap
ChIP 22Rv1_CST_Crispr-36 GSE123618.FOXA1.22Rv1_CST_Crispr-36 99 bp overlap
ChIP 22Rv1_CST_Crispr_WT3 GSE123618.FOXA1.22Rv1_CST_Crispr_WT3 214 bp overlap
ChIP 22Rv1_EtOH GSE80742.FOXA1.22Rv1_EtOH 77 bp overlap
ChIP 22Rv1_i176m_CST GSE123618.FOXA1.22Rv1_i176m_CST 174 bp overlap
ChIP 22Rv1_r261g_CST GSE123618.FOXA1.22Rv1_r261g_CST 151 bp overlap
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 267 bp overlap
ChIP CFPAC-1_FOXA2-KO GSE119930.FOXA1.CFPAC-1_FOXA2-KO 293 bp overlap
ChIP HEK293_i176m_TFS GSE123618.FOXA1.HEK293_i176m_TFS 194 bp overlap
ChIP HEK293_r261g_TFS GSE123618.FOXA1.HEK293_r261g_TFS 68 bp overlap
ChIP Hep-G2 ENCSR267DFA.FOXA1.Hep-G2 212 bp overlap
ChIP HepG2 ENCFF207NVJ 125 bp overlap
ChIP HepG2 ENCFF361KNY 144 bp overlap
ChIP HepG2 ENCFF600IFL 225 bp overlap
ChIP HepG2 ENCFF740VZW 173 bp overlap
ChIP LNCaP_GSK GSE148926.FOXA1.LNCaP_GSK 83 bp overlap
ChIP LS180 GSE140533.FOXA1.LS180 76 bp overlap
ChIP LS180 GSE140533.FOXA1.LS180 67 bp overlap
ChIP MCF-7 GSE59530.FOXA1.MCF-7 59 bp overlap
ChIP MCF-7_E2_TNF GSE59530.FOXA1.MCF-7_E2_TNF 67 bp overlap
ChIP MCF-7_JC4692 GSE126004.FOXA1.MCF-7_JC4692 68 bp overlap
ChIP MCF-7_JC4693 GSE126004.FOXA1.MCF-7_JC4693 59 bp overlap
ChIP MCF-7_estrogen_ab2 GSE112969.FOXA1.MCF-7_estrogen_ab2 136 bp overlap
ChIP MCF-7_vehicle_ab1 GSE112969.FOXA1.MCF-7_vehicle_ab1 147 bp overlap
ChIP MCF-7_vehicle_ab2 GSE112969.FOXA1.MCF-7_vehicle_ab2 233 bp overlap
ChIP NCI-H3122 GSE39998.FOXA1.NCI-H3122 98 bp overlap
ChIP PDAC GSE64557.FOXA1.PDAC 248 bp overlap
ChIP PDAC_KOKLF5 GSE64557.FOXA1.PDAC_KOKLF5 411 bp overlap
ChIP T-47D_CR3flp GSE99479.FOXA1.T-47D_CR3flp 109 bp overlap
ChIP T-47D_JC4745 GSE126004.FOXA1.T-47D_JC4745 59 bp overlap
ChIP T-47D_shRNF2_24h GSE137579.FOXA1.T-47D_shRNF2_24h 101 bp overlap
ChIP T-47D_shRNF2_45min GSE137579.FOXA1.T-47D_shRNF2_45min 109 bp overlap
ChIP liver ENCFF537QZV 244 bp overlap
ChIP liver ENCSR324RCI.FOXA1.liver 211 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 170 bp overlap
FOXA2 14 datasets
ChIP BJ1-hTERT_MimoRelease GSE92491.FOXA2.BJ1-hTERT_MimoRelease 133 bp overlap
ChIP CFPAC-1 GSE119930.FOXA2.CFPAC-1 236 bp overlap
ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 254 bp overlap
ChIP Caco-2 GSE66218.FOXA2.Caco-2 158 bp overlap
ChIP DE DE-FOXA2-1 496 bp overlap
ChIP DE DE-FOXA2-2 500 bp overlap
ChIP HepG2 ENCFF533COJ 75 bp overlap
ChIP HepG2 ENCFF533COJ 297 bp overlap
ChIP HepG2 ENCFF570ABM 209 bp overlap
ChIP HepG2 ENCFF894AYY 305 bp overlap
ChIP PC-3_Veh GSE148982.FOXA2.PC-3_Veh 110 bp overlap
ChIP liver ENCSR080XEY.FOXA2.liver 123 bp overlap
ChIP liver_CARN1618 ERP008682.FOXA2.liver_CARN1618 164 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 206 bp overlap
FOXA3 2 datasets
ChIP HepG2 ENCFF005KGL 223 bp overlap
ChIP HepG2 ENCFF005KGL 361 bp overlap
FOXP1 1 dataset
ChIP Hep-G2 ENCSR369YUK.FOXP1.Hep-G2 322 bp overlap
FOXP4 1 dataset
ChIP Hep-G2 ENCSR232LLP.FOXP4.Hep-G2 231 bp overlap
GATA4 6 datasets
ChIP BJ1-hTERT GSE92491.GATA4.BJ1-hTERT 203 bp overlap
ChIP DE DE-GATA4-1 330 bp overlap
ChIP DE DE-GATA4-2 388 bp overlap
ChIP foregut GSE117136.GATA4.foregut 209 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 385 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 108 bp overlap
GATA6 9 datasets
ChIP AGS GSE51705.GATA6.AGS 130 bp overlap
ChIP DE DE-GATA6-1 501 bp overlap
ChIP DE DE-GATA6-2 439 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 191 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 426 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 195 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 160 bp overlap
ChIP foregut GSE117136.GATA6.foregut 282 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 378 bp overlap
GATAD2A 1 dataset
ChIP HepG2 ENCFF252XNH 287 bp overlap
HNF1A 1 dataset
ChIP HEE_1 GSE76376.HNF1A.HEE_1 218 bp overlap
HNF1B 1 dataset
ChIP foregut GSE117136.HNF1B.foregut 277 bp overlap
HNF4A 9 datasets
ChIP Caco-2_DIFF GSE23436.HNF4A.Caco-2_DIFF 352 bp overlap
ChIP Caco-2_PROLIF GSE23436.HNF4A.Caco-2_PROLIF 133 bp overlap
ChIP GP5D GSE51234.HNF4A.GP5D 179 bp overlap
ChIP Hep-G2 ENCSR469FBY.HNF4A.Hep-G2 216 bp overlap
ChIP Hep-G2 ERP000209.HNF4A.Hep-G2 154 bp overlap
ChIP Hep-G2 ENCSR000BLF.HNF4A.Hep-G2 179 bp overlap
ChIP HepG2 ENCFF146SSF 263 bp overlap
ChIP KATO-III GSE114018.HNF4A.KATO-III 147 bp overlap
ChIP liver ENCFF449HPV 198 bp overlap
HNF4G 2 datasets
ChIP HepG2 ENCFF323ATZ 163 bp overlap
ChIP liver ENCSR297GII.HNF4G.liver 158 bp overlap
HOXB13 1 dataset
ChIP prostate_2480_T GSE130408.HOXB13.prostate_2480_T 186 bp overlap
ISL2 1 dataset
ChIP Hep-G2 ENCSR492IHH.ISL2.Hep-G2 140 bp overlap
JUND 1 dataset
ChIP liver ENCSR196HGZ.JUND.liver 188 bp overlap
MEF2B 1 dataset
ChIP GM12878 ENCSR177VFS.MEF2B.GM12878 170 bp overlap
MYC 1 dataset
ChIP GP5D_SIRAD21 GSE51234.MYC.GP5D_SIRAD21 224 bp overlap
NCOR1 1 dataset
ChIP HepG2 ENCFF685NAH 291 bp overlap
NEUROG2 1 dataset
ChIP MRC-5_N_05DPT GSE75910.NEUROG2.MRC-5_N_05DPT 197 bp overlap
NFKB1 1 dataset
ChIP L1236 GSE63736.NFKB1.L1236 98 bp overlap
PAXIP1 3 datasets
ChIP Hep-G2 ENCSR530ARJ.PAXIP1.Hep-G2 258 bp overlap
ChIP HepG2 ENCFF526NOJ 273 bp overlap
ChIP HepG2 ENCFF526NOJ 473 bp overlap
PRDM6 2 datasets
ChIP HEK293 ENCFF283AJL 80 bp overlap
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 143 bp overlap
RXRA 1 dataset
ChIP Hep-G2 ENCSR000BHU.RXRA.Hep-G2 141 bp overlap
SIX1 1 dataset
ChIP Hep-G2 ENCSR561BQM.SIX1.Hep-G2 215 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 351 bp overlap
SMAD2_3 1 dataset
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 237 bp overlap
SMAD4 2 datasets
ChIP Caco-2 GSE112946.SMAD4.Caco-2 298 bp overlap
ChIP endoderm GSE29422.SMAD4.endoderm 137 bp overlap
SMARCA4 3 datasets
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 202 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 308 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 159 bp overlap
SMARCB1 1 dataset
ChIP hiPSC GSE124903.SMARCB1.hiPSC 203 bp overlap
SMARCC1 1 dataset
ChIP Hep-G2 GSE108514.SMARCC1.Hep-G2 408 bp overlap
SOX13 2 datasets
ChIP Hep-G2 ENCSR445ACU.SOX13.Hep-G2 171 bp overlap
ChIP HepG2 ENCFF062VSQ 186 bp overlap
SOX5 1 dataset
ChIP HepG2 ENCFF470KZD 133 bp overlap
SOX6 3 datasets
ChIP Hep-G2 ENCSR766TSU.SOX6.Hep-G2 330 bp overlap
ChIP HepG2 ENCFF767OCK 383 bp overlap
ChIP HepG2 ENCFF767OCK 581 bp overlap
SOX8 1 dataset
ChIP RH4_Entinostat-6H GSE116344.SOX8.RH4_Entinostat-6H 257 bp overlap
SP1 2 datasets
ChIP Hep-G2 ENCSR000BJX.SP1.Hep-G2 190 bp overlap
ChIP liver ENCFF769YSM 162 bp overlap
SPI1 4 datasets
ChIP DC_96h_donorM GSE128834.SPI1.DC_96h_donorM 100 bp overlap
ChIP EM-3 GSE128834.SPI1.EM-3 152 bp overlap
ChIP RS4-11 GSE71616.SPI1.RS4-11 136 bp overlap
ChIP RS4-11_DEX GSE71616.SPI1.RS4-11_DEX 168 bp overlap
TCF7 1 dataset
ChIP Hep-G2 ENCSR444LIN.TCF7.Hep-G2 188 bp overlap
TEAD4 3 datasets
ChIP Hep-G2 ENCSR000BRP.TEAD4.Hep-G2 122 bp overlap
ChIP HepG2 ENCFF006QNB 157 bp overlap
ChIP HepG2 ENCFF006QNB 394 bp overlap
VDR 1 dataset
ChIP kidney-cortex GSE129585.VDR.kidney-cortex 313 bp overlap
YY1 1 dataset
ChIP liver ENCSR994YLZ.YY1.liver 189 bp overlap
ZBTB20 2 datasets
ChIP HEK293 ENCFF524ADK 455 bp overlap
ChIP HEK293 ENCSR460MBI.ZBTB20.HEK293 267 bp overlap
ZBTB24 1 dataset
ChIP HCT-116 GSE111683.ZBTB24.HCT-116 111 bp overlap
ZFP64 3 datasets
ChIP HEK293 GSE76494.ZFP64.HEK293 205 bp overlap
ChIP Hep-G2 ENCSR487CPI.ZFP64.Hep-G2 405 bp overlap
ChIP HepG2 ENCFF873EPM 151 bp overlap
ZGPAT 1 dataset
ChIP Hep-G2 ENCSR704IGU.ZGPAT.Hep-G2 257 bp overlap
ZNF335 1 dataset
ChIP HEK293 ENCFF784SLD 152 bp overlap
ZNF710 1 dataset
ChIP HepG2 ENCFF170JWO 358 bp overlap
ZNF843 1 dataset
ChIP HEK293 ENCSR502KPJ.ZNF843.HEK293 85 bp overlap
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