chr4 : 88,439,433 88,439,632
199 bp 74 TFs 0 linked genes
This 199 bp open chromatin element has no linked target genes and is bound by 74 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:88,434,433 – 88,444,632
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
74 transcription factors
Source
Cell type
BARX1 1 dataset
Motif DE_12h DE_12h-BARX1_MA0875.2 6 bp overlap
BMI1 1 dataset
ChIP MCF-7 ENCSR966YYJ.BMI1.MCF-7 108 bp overlap
BSX 1 dataset
Motif DE_12h DE_12h-BSX_MA0876.2 6 bp overlap
CEBPB 1 dataset
ChIP HeLa-S3 ENCFF722WEG 199 bp overlap
CTBP1 1 dataset
ChIP MCF-7 ENCSR636EYA.CTBP1.MCF-7 148 bp overlap
CTCF 1 dataset
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 183 bp overlap
DLX1 1 dataset
Motif DE_12h DE_12h-DLX1_MA0879.3 6 bp overlap
DLX6 1 dataset
Motif DE_12h DE_12h-DLX6_MA0882.2 6 bp overlap
Dlx3 1 dataset
Motif DE_12h DE_12h-Dlx3_MA0880.2 6 bp overlap
Dlx4 1 dataset
Motif DE_12h DE_12h-Dlx4_MA0881.2 6 bp overlap
ESRRA 6 datasets
ChIP BT-474 GSE81651.ESRRA.BT-474 199 bp overlap
ChIP BT-474_EGF GSE81651.ESRRA.BT-474_EGF 176 bp overlap
ChIP BT-474_HRG GSE81651.ESRRA.BT-474_HRG 199 bp overlap
Motif DE_12h DE_12h-ESRRA_MA0592.4 9 bp overlap
ChIP SK-BR-3 GSE81651.ESRRA.SK-BR-3 189 bp overlap
ChIP SK-BR-3_HRG GSE81651.ESRRA.SK-BR-3_HRG 199 bp overlap
ESRRB 1 dataset
Motif DE_12h DE_12h-ESRRB_MA0141.4 10 bp overlap
Esrrg 1 dataset
Motif DE_12h DE_12h-Esrrg_MA0643.2 9 bp overlap
GBX2 1 dataset
Motif DE_12h DE_12h-GBX2_MA0890.2 6 bp overlap
GLIS1 1 dataset
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 162 bp overlap
GTF2I 1 dataset
ChIP WTC11 ENCFF255XXZ 59 bp overlap
HDAC2 1 dataset
ChIP H1 ENCFF353UJQ 199 bp overlap
HESX1 1 dataset
Motif DE_12h DE_12h-HESX1_MA0894.2 6 bp overlap
HNF4A 1 dataset
ChIP gastric-epithelial-cell_OE GSE114018.HNF4A.gastric-epithelial-cell_OE 199 bp overlap
HNRNPK 1 dataset
ChIP Hep-G2 GSE120104.HNRNPK.Hep-G2 191 bp overlap
HOXA7 1 dataset
Motif DE_12h DE_12h-HOXA7_MA1498.3 6 bp overlap
IRF2 1 dataset
ChIP keratinocyte_DOX GSE135677.IRF2.keratinocyte_DOX 199 bp overlap
KLF4 1 dataset
ChIP hiPSC GSE56567.KLF4.hiPSC 135 bp overlap
LBX2 1 dataset
Motif DE_12h DE_12h-LBX2_MA0699.2 6 bp overlap
LHX2 1 dataset
Motif DE_12h DE_12h-LHX2_MA0700.3 6 bp overlap
MED1 1 dataset
ChIP hMSC-TERT4_D7 GSE104537.MED1.hMSC-TERT4_D7 110 bp overlap
MITF 1 dataset
ChIP melanocyte_CTR GSE50681.MITF.melanocyte_CTR 184 bp overlap
MSX1 1 dataset
Motif DE_12h DE_12h-MSX1_MA0666.3 6 bp overlap
MSX2 1 dataset
Motif DE_12h DE_12h-MSX2_MA0708.3 6 bp overlap
Msx3 1 dataset
Motif DE_12h DE_12h-Msx3_MA0709.2 6 bp overlap
NANOG 4 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 199 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 199 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 199 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 199 bp overlap
NELFE 1 dataset
ChIP HeLa GSE125534.NELFE.HeLa 119 bp overlap
NR2C1 1 dataset
Motif DE_12h DE_12h-NR2C1_MA1535.2 6 bp overlap
NR2C2 1 dataset
Motif DE_12h DE_12h-NR2C2_MA1536.2 6 bp overlap
NR2F2 1 dataset
Motif DE_12h DE_12h-NR2F2_MA1111.2 7 bp overlap
Nobox 1 dataset
Motif DE_12h DE_12h-Nobox_MA0125.2 6 bp overlap
Nr1H2 1 dataset
Motif DE_12h DE_12h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 1 dataset
Motif DE_12h DE_12h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 1 dataset
Motif DE_12h DE_12h-Nr1h3_MA2337.1 6 bp overlap
Nr5A2 1 dataset
Motif DE_12h DE_12h-Nr5A2_MA0505.3 9 bp overlap
PKNOX1 2 datasets
ChIP MCF-7 ENCFF116OCS 199 bp overlap
ChIP MCF-7 ENCSR986XYK.PKNOX1.MCF-7 182 bp overlap
POU5F1 2 datasets
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 139 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 199 bp overlap
PRDM1 1 dataset
ChIP HEK293 ENCFF302TBP 199 bp overlap
Ppara 1 dataset
Motif DE_12h DE_12h-Ppara_MA2338.1 7 bp overlap
RAD21 3 datasets
ChIP HAP1 GSE126634.RAD21.HAP1 199 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 195 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 199 bp overlap
RAX 1 dataset
Motif DE_12h DE_12h-RAX_MA0718.2 6 bp overlap
SMARCA4 2 datasets
ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 163 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 168 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 170 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 182 bp overlap
SP4 1 dataset
Motif DE_12h DE_12h-SP4_MA0685.2 9 bp overlap
SP5 1 dataset
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
STAT1 1 dataset
ChIP CD14_INFG_LPS GSE43036.STAT1.CD14_INFG_LPS 175 bp overlap
STAT3 2 datasets
ChIP HCC1187 GSE152203.STAT3.HCC1187 175 bp overlap
ChIP MDA-MB-157_EtOH GSE85579.STAT3.MDA-MB-157_EtOH 148 bp overlap
TFAP2A 2 datasets
ChIP MCF-7_E2 GSE60270.TFAP2A.MCF-7_E2 175 bp overlap
ChIP WA09 GSE105081.TFAP2A.WA09 166 bp overlap
TFAP2C 5 datasets
ChIP HCC1954 GSE126897.TFAP2C.HCC1954 144 bp overlap
ChIP MCF-7_E2 GSE23852.TFAP2C.MCF-7_E2 173 bp overlap
ChIP MCF-7_ETOH GSE23852.TFAP2C.MCF-7_ETOH 193 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 199 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 199 bp overlap
TP63 7 datasets
ChIP MCF-10A_Nutlin3A GSE111009.TP63.MCF-10A_Nutlin3A 199 bp overlap
ChIP foreskin GSE126390.TP63.foreskin 171 bp overlap
ChIP keratinocyte_CISP GSE56674.TP63.keratinocyte_CISP 155 bp overlap
ChIP keratinocyte_D0 GSE59824.TP63.keratinocyte_D0 199 bp overlap
ChIP keratinocyte_D2 GSE59824.TP63.keratinocyte_D2 135 bp overlap
ChIP keratinocyte_D4 GSE59824.TP63.keratinocyte_D4 198 bp overlap
ChIP keratinocyte_D7 GSE59824.TP63.keratinocyte_D7 199 bp overlap
Tfcp2l1 1 dataset
Motif DE_12h DE_12h-Tfcp2l1_MA0145.2 14 bp overlap
YAP1 1 dataset
ChIP MCF-7 GSE107013.YAP1.MCF-7 128 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 128 bp overlap
YY1AP1 3 datasets
ChIP MCF-7_E2 GSE125594.YY1AP1.MCF-7_E2 183 bp overlap
ChIP MCF-7_Veh GSE125594.YY1AP1.MCF-7_Veh 187 bp overlap
ChIP PC-9_1DF GSE131687.YY1AP1.PC-9_1DF 124 bp overlap
ZBTB1 2 datasets
ChIP Jurkat_ZBTB1-KO_Asp-deprivation_cDNA GSE145783.ZBTB1.Jurkat_ZBTB1-KO_Asp-deprivation_cDNA 153 bp overlap
ChIP Jurkat_ZBTB1-KO_cDNA GSE145783.ZBTB1.Jurkat_ZBTB1-KO_cDNA 71 bp overlap
ZIC1 1 dataset
Motif DE_12h DE_12h-ZIC1_MA0696.1 14 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 199 bp overlap
ZIC5 1 dataset
Motif DE_12h DE_12h-ZIC5_MA1584.2 15 bp overlap
ZNF121 2 datasets
ChIP HEK293 ENCFF839FUF 145 bp overlap
ChIP HEK293 ENCSR224QDY.ZNF121.HEK293 132 bp overlap
ZNF257 1 dataset
ChIP HEK293T GSE78099.ZNF257.HEK293T 123 bp overlap
ZNF263 1 dataset
Motif DE_12h DE_12h-ZNF263_MA0528.3 7 bp overlap
ZNF512 2 datasets
ChIP K-562 ENCSR591CCL.ZNF512.K-562 119 bp overlap
ChIP WTC11 ENCFF086TTM 131 bp overlap
ZNF512B 2 datasets
ChIP MCF-7 ENCSR555DCF.ZNF512B.MCF-7 106 bp overlap
ChIP MCF-7 ENCSR761LRR.ZNF512B.MCF-7 92 bp overlap