chr1 : 75,100,559 – 75,100,966

407 bp 71 TFs 0 linked genes

This 407 bp open chromatin element has no linked target genes and is bound by 71 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

71 transcription factors

BCL3 1 dataset

ChIP A-549 ENCSR000BQH.BCL3.A-549 179 bp overlap

BRD2 12 datasets

ChIP HCC1806_BAZ2BsiRNA GSE116879.BRD2.HCC1806_BAZ2BsiRNA 407 bp overlap

ChIP HCC1806_NTsiRNA GSE116879.BRD2.HCC1806_NTsiRNA 407 bp overlap

ChIP MDA-MB-231_BAZ2AsiRNA GSE116879.BRD2.MDA-MB-231_BAZ2AsiRNA 407 bp overlap

ChIP MDA-MB-231_BAZ2AsiRNA_JQ1 GSE116879.BRD2.MDA-MB-231_BAZ2AsiRNA_JQ1 297 bp overlap

ChIP MDA-MB-231_BAZ2BsiRNA GSE116879.BRD2.MDA-MB-231_BAZ2BsiRNA 407 bp overlap

ChIP MDA-MB-231_JQ1 GSE116879.BRD2.MDA-MB-231_JQ1 248 bp overlap

ChIP MDA-MB-231_JQ1_rDNA GSE116879.BRD2.MDA-MB-231_JQ1_rDNA 248 bp overlap

ChIP MDA-MB-231_MGSK2801 GSE116879.BRD2.MDA-MB-231_MGSK2801 331 bp overlap

ChIP MDA-MB-231_MGSK2801_rDNA GSE116879.BRD2.MDA-MB-231_MGSK2801_rDNA 331 bp overlap

ChIP MDA-MB-231_NTsiRNA GSE116879.BRD2.MDA-MB-231_NTsiRNA 407 bp overlap

ChIP MDA-MB-231_NTsiRNA_JQ1 GSE116879.BRD2.MDA-MB-231_NTsiRNA_JQ1 140 bp overlap

ChIP SUM159PT_MGSK2801 GSE116879.BRD2.SUM159PT_MGSK2801 248 bp overlap

BRD4 8 datasets

ChIP HCC1806_100nMtrametinib_24h GSE87418.BRD4.HCC1806_100nMtrametinib_24h 269 bp overlap

ChIP MDA-MB-231_JQ1_MGSK2801 GSE116879.BRD4.MDA-MB-231_JQ1_MGSK2801 357 bp overlap

ChIP MDA-MB-231_JQ1_MGSK2801_rDNA GSE116879.BRD4.MDA-MB-231_JQ1_MGSK2801_rDNA 357 bp overlap

ChIP MDA-MB-231_MGSK2801 GSE116879.BRD4.MDA-MB-231_MGSK2801 369 bp overlap

ChIP MDA-MB-231_MGSK2801_rDNA GSE116879.BRD4.MDA-MB-231_MGSK2801_rDNA 369 bp overlap

ChIP SUM159PT_100nMtrametinib_8h GSE87418.BRD4.SUM159PT_100nMtrametinib_8h 407 bp overlap

ChIP SUM159PT_30nMbortezomib_8h GSE87418.BRD4.SUM159PT_30nMbortezomib_8h 212 bp overlap

ChIP SUM159PT_scramble GSE131097.BRD4.SUM159PT_scramble 242 bp overlap

BRD9 1 dataset

ChIP MDA-MB-231_JQ1_MGSK2801 GSE116879.BRD9.MDA-MB-231_JQ1_MGSK2801 208 bp overlap

CREB1 1 dataset

ChIP A-549 ENCSR000BRB.CREB1.A-549 119 bp overlap

EP300 1 dataset

ChIP A-549 ENCSR000BPW.EP300.A-549 407 bp overlap

ERF::FOXI1 1 dataset

Motif DE_12h DE_12h-ERFFOXI1_MA1935.2 10 bp overlap

ETV1 1 dataset

Motif DE_12h DE_12h-ETV1_MA0761.3 9 bp overlap

ETV2::FOXI1 1 dataset

Motif DE_12h DE_12h-ETV2FOXI1_MA1942.2 11 bp overlap

EZH2 1 dataset

ChIP HCT-116 ENCSR046HGP.EZH2.HCT-116 407 bp overlap

Erg 1 dataset

Motif DE_12h DE_12h-Erg_MA0474.4 10 bp overlap

FLI1::FOXI1 1 dataset

Motif DE_12h DE_12h-FLI1FOXI1_MA1950.2 11 bp overlap

FOSL2 2 datasets

ChIP A-549 ENCSR000BQO.FOSL2.A-549 176 bp overlap

ChIP A-549 ENCSR448TVS.FOSL2.A-549 198 bp overlap

FOXA1 2 datasets

ChIP A-549 ENCSR000BPX.FOXA1.A-549 173 bp overlap

ChIP A-549 ENCSR000BRD.FOXA1.A-549 175 bp overlap

FOXA2 1 dataset

ChIP Caco-2 GSE66218.FOXA2.Caco-2 70 bp overlap

FOXJ2::ELF1 1 dataset

Motif DE_12h DE_12h-FOXJ2ELF1_MA1952.2 11 bp overlap

GABPA 1 dataset

Motif DE_12h DE_12h-GABPA_MA0062.4 10 bp overlap

GATA3 1 dataset

ChIP A-549 ENCSR000BTI.GATA3.A-549 151 bp overlap

GLI3 1 dataset

Motif DE_12h DE_12h-GLI3_MA1491.3 15 bp overlap

GLIS1 2 datasets

ChIP HEK293 ENCFF299RSE 210 bp overlap

ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 230 bp overlap

GLIS3 1 dataset

ChIP H9_plus GSE109562.GLIS3.H9_plus 324 bp overlap

Gli1 1 dataset

Motif DE_12h DE_12h-Gli1_MA1990.2 10 bp overlap

Gli2 1 dataset

Motif DE_12h DE_12h-Gli2_MA0734.4 9 bp overlap

HNF4A 2 datasets

ChIP Caco-2_DIFF GSE23436.HNF4A.Caco-2_DIFF 222 bp overlap

Motif DE_12h DE_12h-HNF4A_MA0114.5 9 bp overlap

HNF4G 1 dataset

Motif DE_12h DE_12h-HNF4G_MA0484.3 9 bp overlap

HOXD10 1 dataset

Motif DE_12h DE_12h-HOXD10_MA1506.2 10 bp overlap

IKZF1 1 dataset

Motif DE_12h DE_12h-IKZF1_MA1508.2 8 bp overlap

IKZF2 1 dataset

Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap

INO80 1 dataset

ChIP Huh-7 GSE97411.INO80.Huh-7 378 bp overlap

JUND 1 dataset

ChIP A-549 ENCSR000BRF.JUND.A-549 149 bp overlap

KLF13 1 dataset

Motif DE_12h DE_12h-KLF13_MA0657.2 17 bp overlap

KLF5 1 dataset

Motif DE_12h DE_12h-KLF5_MA0599.1 10 bp overlap

MAX 2 datasets

ChIP A-549 ENCSR000BTJ.MAX.A-549 144 bp overlap

ChIP A549 ENCFF310XGQ 389 bp overlap

MCRS1 1 dataset

ChIP Huh-7 GSE97411.MCRS1.Huh-7 246 bp overlap

MED1 1 dataset

ChIP A-549 GSE76893.MED1.A-549 134 bp overlap

NEUROD1 1 dataset

ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 407 bp overlap

NFE2L2 1 dataset

ChIP A-549 GSE113497.NFE2L2.A-549 400 bp overlap

NFIB 1 dataset

Motif DE_12h DE_12h-NFIB_MA1643.2 17 bp overlap

NFIC 1 dataset

Motif DE_12h DE_12h-NFIC_MA1527.2 15 bp overlap

NFIC::TLX1 1 dataset

Motif DE_12h DE_12h-NFICTLX1_MA0119.1 14 bp overlap

NFIX 1 dataset

Motif DE_12h DE_12h-NFIX_MA1528.2 14 bp overlap

NIPBL 1 dataset

ChIP A-549 GSE76893.NIPBL.A-549 216 bp overlap

NR3C1 2 datasets

ChIP A-549 ENCSR000BHF.NR3C1.A-549 162 bp overlap

ChIP SUM159PT GSE152203.NR3C1.SUM159PT 168 bp overlap

PHF8 1 dataset

ChIP A-549 ENCSR541AOQ.PHF8.A-549 229 bp overlap

POU2F3 1 dataset

Motif DE_12h DE_12h-POU2F3_MA0627.3 9 bp overlap

POU5F1 1 dataset

ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 256 bp overlap

PRDM1 1 dataset

Motif DE_12h DE_12h-PRDM1_MA0508.4 7 bp overlap

RBPJ 1 dataset

Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap

RING1 1 dataset

ChIP SYO-1_shRING1A-B GSE139053.RING1.SYO-1_shRING1A-B 407 bp overlap

SIN3A 3 datasets

ChIP A-549 ENCSR513XQX.SIN3A.A-549 407 bp overlap

ChIP A549 ENCFF752ATT 407 bp overlap

ChIP A549 ENCFF752ATT 317 bp overlap

SMAD2 1 dataset

ChIP hESC_activinA_15h GSE99202.SMAD2.hESC_activinA_15h 346 bp overlap

SMAD2-3 2 datasets

ChIP HGrC1_EV-TGF GSE138496.SMAD2-3.HGrC1_EV-TGF 126 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 235 bp overlap

SMAD2_3 1 dataset

ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 245 bp overlap

SMAD3 1 dataset

Motif DE_12h DE_12h-SMAD3_MA0795.1 10 bp overlap

SMAD4 1 dataset

ChIP Caco-2 GSE112946.SMAD4.Caco-2 407 bp overlap

SMAD5 1 dataset

Motif DE_12h DE_12h-SMAD5_MA1557.1 10 bp overlap

SMARCA2 1 dataset

ChIP NPC_K755R-siCT GSE122631.SMARCA2.NPC_K755R-siCT 212 bp overlap

SMARCA4 2 datasets

ChIP A-549_AG15685 GSE132290.SMARCA4.A-549_AG15685 407 bp overlap

ChIP Aska-SS GSE108025.SMARCA4.Aska-SS 337 bp overlap

SOX2 1 dataset

ChIP RENVM GSE49404.SOX2.RENVM 135 bp overlap

SP1 1 dataset

ChIP A-549 ENCSR000BPE.SP1.A-549 353 bp overlap

TAF1 1 dataset

ChIP A-549 ENCSR000BPF.TAF1.A-549 314 bp overlap

TCF12 1 dataset

ChIP A-549 ENCSR000BQQ.TCF12.A-549 407 bp overlap

TEAD1 3 datasets

ChIP HUCCT1 GSE68296.TEAD1.HUCCT1 257 bp overlap

ChIP MSTO GSE68170.TEAD1.MSTO 288 bp overlap

ChIP pancreas_12D ERP008682.TEAD1.pancreas_12D 150 bp overlap

TEAD4 4 datasets

ChIP A-549 ENCSR000BUD.TEAD4.A-549 174 bp overlap

ChIP A549 ENCFF243FTL 276 bp overlap

ChIP MDA-MB-231 GSE66081.TEAD4.MDA-MB-231 237 bp overlap

ChIP SNU-216 GSE44416.TEAD4.SNU-216 177 bp overlap

YY1 1 dataset

ChIP A-549 ENCSR000BPM.YY1.A-549 172 bp overlap

ZBTB6 1 dataset

Motif DE_12h DE_12h-ZBTB6_MA1581.2 9 bp overlap

ZNF175 1 dataset

Motif DE_12h DE_12h-ZNF175_MA2332.1 9 bp overlap

ZNF454 1 dataset

Motif DE_12h DE_12h-ZNF454_MA1712.2 17 bp overlap

ZNF701 1 dataset

Motif DE_12h DE_12h-ZNF701_MA1987.2 17 bp overlap

Zfp809 1 dataset

Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap

Znf423 1 dataset

Motif DE_12h DE_12h-Znf423_MA0116.1 15 bp overlap