chr4 : 55,132,777 – 55,133,105
328 bp 53 TFs 1 linked gene
This 328 bp open chromatin element is linked to KDR and is bound by 53 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
KDR 7.2 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:55,127,777 – 55,138,105
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
53 transcription factors
Source
Cell type
AR 1 dataset
ChIP WTC11 ENCFF267GQJ 99 bp overlap
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 328 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 328 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 262 bp overlap
BCL11A 1 dataset
ChIP WA01 ENCSR000BIP.BCL11A.WA01 186 bp overlap
BCOR 2 datasets
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 220 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 156 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 202 bp overlap
CHD2 1 dataset
ChIP H1 ENCFF991MKH 302 bp overlap
CHD7 1 dataset
ChIP WA01 ENCSR000AVA.CHD7.WA01 233 bp overlap
EP300 3 datasets
ChIP H1 ENCFF927IYK 257 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 209 bp overlap
ChIP hESC GSE17917.EP300.hESC 328 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 328 bp overlap
EZH2 1 dataset
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 235 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 307 bp overlap
FOXP4 1 dataset
ChIP WTC11 ENCFF708TAF 302 bp overlap
GTF2I 1 dataset
ChIP WTC11 ENCFF255XXZ 138 bp overlap
HDAC2 2 datasets
ChIP H1 ENCFF939VKA 129 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 191 bp overlap
ISL2 1 dataset
Motif DE_12h DE_12h-ISL2_MA0914.2 6 bp overlap
JUN 4 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 288 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 184 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 328 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 320 bp overlap
KLF4 2 datasets
ChIP WA09 GSE105028.KLF4.WA09 195 bp overlap
ChIP WIBR3 GSE130417.KLF4.WIBR3 107 bp overlap
LEF1 1 dataset
ChIP hESC_WNT3A GSE64758.LEF1.hESC_WNT3A 222 bp overlap
MAFK 1 dataset
ChIP H1 ENCFF854XWE 257 bp overlap
MAX 2 datasets
ChIP H1 ENCFF914VQY 309 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 228 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 246 bp overlap
NANOG 10 datasets
ChIP GM23338 ENCFF065NZG 305 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 322 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 328 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 328 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 187 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 328 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 328 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 328 bp overlap
ChIP hESC GSE18292.NANOG.hESC 318 bp overlap
ChIP hESC GSE20650.NANOG.hESC 268 bp overlap
NIPBL 4 datasets
ChIP hESC GSE64758.NIPBL.hESC 317 bp overlap
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 266 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 328 bp overlap
ChIP hESC_activin GSE64758.NIPBL.hESC_activin 302 bp overlap
NR2F1 1 dataset
Motif DE_12h DE_12h-NR2F1_MA1538.1 15 bp overlap
Nkx3-2 1 dataset
Motif DE_12h DE_12h-Nkx3-2_MA0122.4 10 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 303 bp overlap
POLR2A 2 datasets
ChIP GM23338 ENCFF450WCS 328 bp overlap
ChIP H1 ENCFF566JSR 328 bp overlap
POU5F1 15 datasets
ChIP BG03 GSE21614.POU5F1.BG03 302 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 257 bp overlap
ChIP GM23338 ENCFF333SNB 311 bp overlap
ChIP H1 ENCFF698ZAP 205 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 328 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 193 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 212 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 286 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 328 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 307 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 328 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 328 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 328 bp overlap
ChIP hiPSC GSE149017.POU5F1.hiPSC 228 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 278 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 299 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 159 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 190 bp overlap
SIN3A 1 dataset
ChIP H1 ENCFF042ZSL 328 bp overlap
SIX4 1 dataset
ChIP WTC11 ENCFF891HYW 266 bp overlap
SMAD2_3 1 dataset
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 264 bp overlap
SMAD3 2 datasets
ChIP BG03 GSE21614.SMAD3.BG03 290 bp overlap
ChIP hESC GSE29422.SMAD3.hESC 186 bp overlap
SMARCA4 3 datasets
ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 279 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 328 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 328 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 266 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 328 bp overlap
SMARCC1 3 datasets
ChIP ESC S25-ESC-d0-BAF155-exp1 328 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 313 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 328 bp overlap
SOX2 4 datasets
ChIP H9 GSE46837.SOX2.H9 200 bp overlap
ChIP hESC GSE69479.SOX2.hESC 224 bp overlap
ChIP hESC GSE18292.SOX2.hESC 175 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 328 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 256 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 277 bp overlap
TBP 7 datasets
ChIP H1 ENCFF859IIO 172 bp overlap
ChIP H1 ENCFF859IIO 308 bp overlap
ChIP WA01 ENCSR000ECB.TBP.WA01 124 bp overlap
ChIP hESC GSE122298.TBP.hESC 179 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 76 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 123 bp overlap
ChIP hESC_8h GSE122298.TBP.hESC_8h 202 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 217 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 217 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 323 bp overlap
TEAD4 3 datasets
ChIP ESC S26-ESC-d0-TEAD4-exp1 247 bp overlap
ChIP H1 ENCFF778PAX 207 bp overlap
ChIP hESC GSE99202.TEAD4.hESC 255 bp overlap
TP53 1 dataset
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 316 bp overlap
TRIM28 2 datasets
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 271 bp overlap
ChIP hESC GSE115387.TRIM28.hESC 296 bp overlap
YY1 5 datasets
ChIP H1 ENCFF524BTL 215 bp overlap
ChIP NT2-D1 ENCSR000EXG.YY1.NT2-D1 260 bp overlap
ChIP NT2/D1 ENCFF999MII 291 bp overlap
ChIP WA01 GSE39096.YY1.WA01 297 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 273 bp overlap
ZNF157 1 dataset
Motif DE_12h DE_12h-ZNF157_MA2331.1 21 bp overlap
ZNF184 2 datasets
ChIP WTC11 ENCFF352POG 328 bp overlap
ChIP WTC11 ENCFF352POG 175 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 284 bp overlap
ZNF281 1 dataset
ChIP WTC11 ENCFF551GAV 274 bp overlap
ZNF462 1 dataset
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 145 bp overlap
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