chr4 : 54,065,973 – 54,066,176
203 bp 52 TFs 1 linked gene
This 203 bp open chromatin element is linked to CHIC2 and is bound by 52 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
CHIC2 1.4 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:54,060,973 – 54,071,176
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
52 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP 12Z GSE129781.ARID1A.12Z 74 bp overlap
BCOR 2 datasets
ChIP K-562 ENCSR808AKZ.BCOR.K-562 176 bp overlap
ChIP K562 ENCFF343XWA 177 bp overlap
BRD2 2 datasets
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 203 bp overlap
ChIP SK-MEL-147_JQ1 GSE94488.BRD2.SK-MEL-147_JQ1 75 bp overlap
BRD4 5 datasets
ChIP HT29 GSE73319.BRD4.HT29 203 bp overlap
ChIP HUVEC-C_modETS1 GSE93030.BRD4.HUVEC-C_modETS1 77 bp overlap
ChIP MDA-MB-231_JQ1-neg_L GSE136151.BRD4.MDA-MB-231_JQ1-neg_L 136 bp overlap
ChIP SUM159PT_scramble GSE131097.BRD4.SUM159PT_scramble 203 bp overlap
ChIP keratinocyte GSE140992.BRD4.keratinocyte 203 bp overlap
CLOCK 1 dataset
ChIP U2OS GSE44236.CLOCK.U2OS 143 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF364PUR 149 bp overlap
ELF1 1 dataset
ChIP K-562 ENCSR000BMD.ELF1.K-562 144 bp overlap
ERG 4 datasets
ChIP HUVEC-C GSE124891.ERG.HUVEC-C 203 bp overlap
ChIP HUVEC-C GSE128382.ERG.HUVEC-C 153 bp overlap
ChIP aortic-endothelial-cell_D39 GSE139377.ERG.aortic-endothelial-cell_D39 203 bp overlap
ChIP aortic-endothelial-cell_D47 GSE139377.ERG.aortic-endothelial-cell_D47 157 bp overlap
ESR2 1 dataset
ChIP MDA-MB-231_estradiol GSE108979.ESR2.MDA-MB-231_estradiol 203 bp overlap
ETV1 1 dataset
ChIP COLO-800 GSE80443.ETV1.COLO-800 130 bp overlap
FOS 1 dataset
ChIP endothelial cell of umbilical vein ENCFF415XBG 96 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-2 74 bp overlap
GATA2 2 datasets
ChIP CD34_ACY957 GSE60792.GATA2.CD34_ACY957 120 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EVW.GATA2.endothelial_umbilical-vein 191 bp overlap
GATA6 1 dataset
ChIP DE DE-GATA6-2 122 bp overlap
GMEB1 1 dataset
ChIP K562 ENCFF705LHX 162 bp overlap
GTF2I 1 dataset
ChIP K562 ENCFF539BYI 178 bp overlap
HDAC2 1 dataset
ChIP K-562 ENCSR893WSB.HDAC2.K-562 69 bp overlap
HDGF 1 dataset
ChIP K-562 ENCSR197ALX.HDGF.K-562 166 bp overlap
JUN 1 dataset
ChIP MDA-BoM-1833 GSE112444.JUN.MDA-BoM-1833 185 bp overlap
JUNB 1 dataset
ChIP HAEC GSE89970.JUNB.HAEC 141 bp overlap
KDM1A 8 datasets
ChIP K-562 ENCSR000ATX.KDM1A.K-562 132 bp overlap
ChIP K-562_Wnt GSE117944.KDM1A.K-562_Wnt 77 bp overlap
ChIP Kasumi-1_DMSO GSE71739.KDM1A.Kasumi-1_DMSO 178 bp overlap
ChIP Kasumi-1_GSK690 GSE71739.KDM1A.Kasumi-1_GSK690 130 bp overlap
ChIP Kasumi-1_RN1 GSE71739.KDM1A.Kasumi-1_RN1 158 bp overlap
ChIP NB4_DMSO GSE128528.KDM1A.NB4_DMSO 59 bp overlap
ChIP SKNO-1_GSK690 GSE71739.KDM1A.SKNO-1_GSK690 162 bp overlap
ChIP SKNO-1_RN1 GSE71739.KDM1A.SKNO-1_RN1 129 bp overlap
KMT2D 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.KMT2D.BIN-67_lentivirus-SMARCA4 191 bp overlap
MAX 1 dataset
ChIP Hep-G2 ENCSR000BTM.MAX.Hep-G2 70 bp overlap
MED1 13 datasets
ChIP U-87MG GSE36354.MED1.U-87MG 82 bp overlap
ChIP hMSC-TERT4_4h GSE104537.MED1.hMSC-TERT4_4h 77 bp overlap
ChIP hMSC-TERT4_D0 GSE104537.MED1.hMSC-TERT4_D0 132 bp overlap
ChIP hMSC-TERT4_D14 GSE104537.MED1.hMSC-TERT4_D14 79 bp overlap
ChIP hMSC-TERT4_D3 GSE104537.MED1.hMSC-TERT4_D3 130 bp overlap
ChIP hMSC-TERT4_D7 GSE104537.MED1.hMSC-TERT4_D7 121 bp overlap
ChIP hMSC-TERT4_adipocyte-4H GSE113253.MED1.hMSC-TERT4_adipocyte-4H 51 bp overlap
ChIP hMSC-TERT4_adipocyte-D3 GSE113253.MED1.hMSC-TERT4_adipocyte-D3 110 bp overlap
ChIP hMSC-TERT4_osteoblast-4H GSE113253.MED1.hMSC-TERT4_osteoblast-4H 203 bp overlap
ChIP hMSC-TERT4_osteoblast-D1 GSE113253.MED1.hMSC-TERT4_osteoblast-D1 203 bp overlap
ChIP hMSC-TERT4_osteoblast-D3 GSE113253.MED1.hMSC-TERT4_osteoblast-D3 114 bp overlap
ChIP hMSC-TERT4_osteoblast-D7 GSE113253.MED1.hMSC-TERT4_osteoblast-D7 203 bp overlap
ChIP hMSC-TERT4_undifferentiated GSE113253.MED1.hMSC-TERT4_undifferentiated 150 bp overlap
MED26 1 dataset
ChIP HEK293T GSE121024.MED26.HEK293T 103 bp overlap
MYB 1 dataset
ChIP DU528 GSE94000.MYB.DU528 203 bp overlap
NR3C1 2 datasets
ChIP BEAS-2B_TNF_IA1 GSE125623.NR3C1.BEAS-2B_TNF_IA1 87 bp overlap
ChIP BEAS-2B_Veh_IA1 GSE125623.NR3C1.BEAS-2B_Veh_IA1 203 bp overlap
POLR2A 4 datasets
ChIP breast epithelium ENCFF960NNA 203 bp overlap
ChIP endothelial cell of umbilical vein ENCFF091YHT 167 bp overlap
ChIP endothelial cell of umbilical vein ENCFF303XUJ 60 bp overlap
ChIP esophagus muscularis mucosa ENCFF791ZXN 203 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 50 bp overlap
RBM25 3 datasets
ChIP K-562 ENCSR791OZM.RBM25.K-562 135 bp overlap
ChIP K562 ENCFF248CGR 53 bp overlap
ChIP K562 ENCFF957ORK 53 bp overlap
RELA 26 datasets
ChIP HAEC GSE89970.RELA.HAEC 58 bp overlap
ChIP HAEC_TNFa_4h GSE89970.RELA.HAEC_TNFa_4h 115 bp overlap
ChIP aortic-endothelial-cell_IL1B_D11 GSE139377.RELA.aortic-endothelial-cell_IL1B_D11 149 bp overlap
ChIP aortic-endothelial-cell_IL1B_D13 GSE139377.RELA.aortic-endothelial-cell_IL1B_D13 192 bp overlap
ChIP aortic-endothelial-cell_IL1B_D14 GSE139377.RELA.aortic-endothelial-cell_IL1B_D14 203 bp overlap
ChIP aortic-endothelial-cell_IL1B_D16 GSE139377.RELA.aortic-endothelial-cell_IL1B_D16 135 bp overlap
ChIP aortic-endothelial-cell_IL1B_D2 GSE139377.RELA.aortic-endothelial-cell_IL1B_D2 55 bp overlap
ChIP aortic-endothelial-cell_IL1B_D21 GSE139377.RELA.aortic-endothelial-cell_IL1B_D21 195 bp overlap
ChIP aortic-endothelial-cell_IL1B_D22 GSE139377.RELA.aortic-endothelial-cell_IL1B_D22 203 bp overlap
ChIP aortic-endothelial-cell_IL1B_D25 GSE139377.RELA.aortic-endothelial-cell_IL1B_D25 74 bp overlap
ChIP aortic-endothelial-cell_IL1B_D26 GSE139377.RELA.aortic-endothelial-cell_IL1B_D26 176 bp overlap
ChIP aortic-endothelial-cell_IL1B_D28 GSE139377.RELA.aortic-endothelial-cell_IL1B_D28 110 bp overlap
ChIP aortic-endothelial-cell_IL1B_D33 GSE139377.RELA.aortic-endothelial-cell_IL1B_D33 58 bp overlap
ChIP aortic-endothelial-cell_IL1B_D35 GSE139377.RELA.aortic-endothelial-cell_IL1B_D35 124 bp overlap
ChIP aortic-endothelial-cell_IL1B_D38 GSE139377.RELA.aortic-endothelial-cell_IL1B_D38 137 bp overlap
ChIP aortic-endothelial-cell_IL1B_D39 GSE139377.RELA.aortic-endothelial-cell_IL1B_D39 132 bp overlap
ChIP aortic-endothelial-cell_IL1B_D4 GSE139377.RELA.aortic-endothelial-cell_IL1B_D4 203 bp overlap
ChIP aortic-endothelial-cell_IL1B_D40 GSE139377.RELA.aortic-endothelial-cell_IL1B_D40 131 bp overlap
ChIP aortic-endothelial-cell_IL1B_D41 GSE139377.RELA.aortic-endothelial-cell_IL1B_D41 181 bp overlap
ChIP aortic-endothelial-cell_IL1B_D45 GSE139377.RELA.aortic-endothelial-cell_IL1B_D45 159 bp overlap
ChIP aortic-endothelial-cell_IL1B_D47 GSE139377.RELA.aortic-endothelial-cell_IL1B_D47 118 bp overlap
ChIP aortic-endothelial-cell_IL1B_D49 GSE139377.RELA.aortic-endothelial-cell_IL1B_D49 127 bp overlap
ChIP aortic-endothelial-cell_IL1B_D53 GSE139377.RELA.aortic-endothelial-cell_IL1B_D53 65 bp overlap
ChIP aortic-endothelial-cell_IL1B_D6 GSE139377.RELA.aortic-endothelial-cell_IL1B_D6 141 bp overlap
ChIP aortic-endothelial-cell_IL1B_D7 GSE139377.RELA.aortic-endothelial-cell_IL1B_D7 143 bp overlap
ChIP aortic-endothelial-cell_IL1B_D9 GSE139377.RELA.aortic-endothelial-cell_IL1B_D9 203 bp overlap
RUNX1T1 1 dataset
ChIP Kasumi-1 GSE115115.RUNX1T1.Kasumi-1 140 bp overlap
SMARCA4 2 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 203 bp overlap
ChIP TTC-549_NoDox GSE71504.SMARCA4.TTC-549_NoDox 165 bp overlap
SMARCA5 1 dataset
ChIP K-562 ENCSR895HSJ.SMARCA5.K-562 129 bp overlap
SMARCC1 2 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4 155 bp overlap
ChIP TTC-549_NoDox GSE71504.SMARCC1.TTC-549_NoDox 200 bp overlap
SMC1 1 dataset
ChIP HCAEC GSE101921.SMC1.HCAEC 203 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 197 bp overlap
SS18 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SS18.BIN-67_lentivirus-SMARCA4 203 bp overlap
STAG2 1 dataset
ChIP HCAEC GSE101921.STAG2.HCAEC 147 bp overlap
STAT1_pS727 1 dataset
ChIP SET-2 GSE100566.STAT1_pS727.SET-2 203 bp overlap
TEAD1 1 dataset
ChIP adipocyte GSE140782.TEAD1.adipocyte 83 bp overlap
TEAD4 2 datasets
ChIP SK-MEL-147 GSE94488.TEAD4.SK-MEL-147 66 bp overlap
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 176 bp overlap
VDR 2 datasets
ChIP LX2_CALCIPOTRIOL_TGFB1 GSE38103.VDR.LX2_CALCIPOTRIOL_TGFB1 65 bp overlap
ChIP THP-1_1d_1-25-OH-2D3 GSE89431.VDR.THP-1_1d_1-25-OH-2D3 50 bp overlap
ZBTB2 1 dataset
ChIP K-562 ENCSR230PTV.ZBTB2.K-562 125 bp overlap
ZFP36 2 datasets
ChIP K-562 ENCSR776CYN.ZFP36.K-562 88 bp overlap
ChIP K562 ENCFF255RZG 115 bp overlap
ZFX 1 dataset
ChIP K562 ENCFF169LZT 78 bp overlap
ZMYM3 3 datasets
ChIP Hep-G2_Ab_JH39-2-2F10 GSE97661.ZMYM3.Hep-G2_Ab_JH39-2-2F10 96 bp overlap
ChIP K-562 ENCSR102KIN.ZMYM3.K-562 107 bp overlap
ChIP K-562_Ab_JH39-2-2F10 GSE97661.ZMYM3.K-562_Ab_JH39-2-2F10 64 bp overlap
ZNF143 1 dataset
ChIP FLP143HA_T0 GSE39263.ZNF143.FLP143HA_T0 73 bp overlap
ZNF24 1 dataset
ChIP K-562 ENCSR099NCH.ZNF24.K-562 203 bp overlap
ZNF512 1 dataset
ChIP K562 ENCFF601EMZ 69 bp overlap
ZNF592 1 dataset
ChIP K-562 ENCSR249BHQ.ZNF592.K-562 50 bp overlap
ZNF768 1 dataset
ChIP HepG2 ENCFF388QCK 84 bp overlap
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