chr4 : 53,026,133 53,026,508
375 bp 56 TFs 0 linked genes
This 375 bp open chromatin element has no linked target genes and is bound by 56 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:53,021,133 – 53,031,508
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
56 transcription factors
Source
Cell type
ATRX 2 datasets
ChIP metastatic-neuroblastoma_SKNFI GSE100148.ATRX.metastatic-neuroblastoma_SKNFI 311 bp overlap
ChIP metastatic-neuroblastoma_SKNMM GSE100148.ATRX.metastatic-neuroblastoma_SKNMM 220 bp overlap
BNC2 2 datasets
ChIP SK-N-SH ENCFF174EMC 327 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR754GYI.BNC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 279 bp overlap
BRD4 9 datasets
ChIP BE2C GSE80151.BRD4.BE2C 375 bp overlap
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 210 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.BRD4.Kelly_resistant_JQ1 133 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 346 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 167 bp overlap
ChIP RH4_shscr GSE140115.BRD4.RH4_shscr 262 bp overlap
ChIP SK-N-BE2-C GSE80151.BRD4.SK-N-BE2-C 375 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 375 bp overlap
ChIP SK-N-BE2-C_Resistant-veh GSE107706.BRD4.SK-N-BE2-C_Resistant-veh 375 bp overlap
CDK9 1 dataset
ChIP Kelly_DMSO GSE107126.CDK9.Kelly_DMSO 209 bp overlap
CHD2 2 datasets
ChIP SK-N-SH ENCFF669KMB 248 bp overlap
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 316 bp overlap
CREB5 2 datasets
ChIP SK-N-SH ENCFF144PMI 250 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR758GOA.CREB5.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 291 bp overlap
CSDC2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR474KBG.CSDC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 86 bp overlap
CSRNP3 1 dataset
ChIP SK-N-SH ENCFF710BXD 210 bp overlap
CTCF 1 dataset
ChIP BE2C ENCFF757SRF 255 bp overlap
EP300 3 datasets
ChIP SK-N-SH ENCFF829RWA 283 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 335 bp overlap
ChIP SK-N-SH ENCSR000BUA.EP300.SK-N-SH 216 bp overlap
ESR1 2 datasets
ChIP MCF-7_E2+4OHT_SRC-3 GSE119702.ESR1.MCF-7_E2+4OHT_SRC-3 272 bp overlap
ChIP MCF-7_SRC3_OHT GSE119702.ESR1.MCF-7_SRC3_OHT 272 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-1 220 bp overlap
FOXJ3 1 dataset
ChIP SK-N-SH ENCFF124KVL 268 bp overlap
FOXL2 1 dataset
ChIP HGrC1_C134W-TGF GSE138496.FOXL2.HGrC1_C134W-TGF 243 bp overlap
FOXM1 2 datasets
ChIP SK-N-SH ENCFF404RGX 288 bp overlap
ChIP SK-N-SH ENCSR000BTB.FOXM1.SK-N-SH 215 bp overlap
GATA2 4 datasets
ChIP SH-SY5Y ENCFF485YIB 230 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 334 bp overlap
ChIP SK-N-SH ENCFF764OZD 119 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 371 bp overlap
GATA3 10 datasets
ChIP BE2C GSE65664.GATA3.BE2C 290 bp overlap
ChIP CLB-Ga GSE90683.GATA3.CLB-Ga 322 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 285 bp overlap
ChIP Kelly GSE94822.GATA3.Kelly 248 bp overlap
ChIP SH-SY5Y ENCFF475HYF 276 bp overlap
ChIP SH-SY5Y ENCFF475HYF 74 bp overlap
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 375 bp overlap
ChIP SH-SY5Y GSE65664.GATA3.SH-SY5Y 252 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 299 bp overlap
ChIP SK-N-SH ENCFF040SSB 248 bp overlap
GATA4 7 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 98 bp overlap
ChIP DE DE-GATA4-1 308 bp overlap
ChIP DE DE-GATA4-2 285 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 146 bp overlap
ChIP foregut GSE117136.GATA4.foregut 314 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 375 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 330 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 259 bp overlap
ChIP DE DE-GATA6-2 281 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 297 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 278 bp overlap
ChIP foregut GSE117136.GATA6.foregut 330 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 281 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 262 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 244 bp overlap
HAND2 3 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 375 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 360 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 375 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 375 bp overlap
KDM1A 4 datasets
ChIP SH-SY5Y_B0 GSE58258.KDM1A.SH-SY5Y_B0 297 bp overlap
ChIP SH-SY5Y_B0_SHLSD18A GSE58258.KDM1A.SH-SY5Y_B0_SHLSD18A 210 bp overlap
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 311 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 249 bp overlap
LHX2 1 dataset
ChIP retina_pigment GSE60024.LHX2.retina_pigment 263 bp overlap
MAML3 2 datasets
ChIP SK-N-SH GSE69119.MAML3.SK-N-SH 301 bp overlap
ChIP SK-N-SH_RA GSE69119.MAML3.SK-N-SH_RA 330 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 237 bp overlap
MXI1 2 datasets
ChIP SK-N-SH ENCFF746HVJ 274 bp overlap
ChIP SK-N-SH ENCSR000EIA.MXI1.SK-N-SH 215 bp overlap
MYC 2 datasets
ChIP NB69 GSE138295.MYC.NB69 330 bp overlap
ChIP SK-N-AS GSE138295.MYC.SK-N-AS 135 bp overlap
MYCN 10 datasets
ChIP BE2C GSE80151.MYCN.BE2C 235 bp overlap
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 303 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 318 bp overlap
ChIP Kelly GSE80151.MYCN.Kelly 162 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 248 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 375 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 305 bp overlap
ChIP NB-1643 GSE94782.MYCN.NB-1643 272 bp overlap
ChIP SK-N-BE2-C GSE94822.MYCN.SK-N-BE2-C 288 bp overlap
ChIP SK-N-BE2-C GSE80151.MYCN.SK-N-BE2-C 225 bp overlap
NFIC 1 dataset
ChIP SK-N-SH ENCSR000BSV.NFIC.SK-N-SH 253 bp overlap
PDX1 1 dataset
ChIP hiPSC GSE125768.PDX1.hiPSC 178 bp overlap
PHOX2B 2 datasets
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 375 bp overlap
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 375 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 375 bp overlap
POU5F1 1 dataset
ChIP hiPSC GSE56567.POU5F1.hiPSC 170 bp overlap
PPARA 2 datasets
ChIP SK-N-SH ENCFF446HWC 261 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR602QEJ.PPARA.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 322 bp overlap
RAD21 2 datasets
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 292 bp overlap
ChIP SK-N-SH GSE76815.RAD21.SK-N-SH 92 bp overlap
RCOR1 2 datasets
ChIP SK-N-SH ENCFF518EXB 290 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 350 bp overlap
REST 5 datasets
ChIP PFSK-1 ENCFF845VHA 321 bp overlap
ChIP PFSK1 ENCSR000BOX.REST.PFSK1 125 bp overlap
ChIP SK-N-SH ENCFF861MKH 245 bp overlap
ChIP SK-N-SH ENCFF861MKH 59 bp overlap
ChIP SK-N-SH ENCSR000BJJ.REST.SK-N-SH 243 bp overlap
SIN3A 1 dataset
ChIP PFSK-1 ENCFF218MAY 283 bp overlap
SMARCA4 4 datasets
ChIP NGP GSE134626.SMARCA4.NGP 330 bp overlap
ChIP NGP_ARID1A-het GSE134626.SMARCA4.NGP_ARID1A-het 236 bp overlap
ChIP NGP_ARID1A-mut1 GSE134626.SMARCA4.NGP_ARID1A-mut1 308 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 367 bp overlap
SMC3 1 dataset
ChIP SK-N-SH ENCSR000EHW.SMC3.SK-N-SH 116 bp overlap
SNAI2 2 datasets
ChIP SK-N-SH ENCFF449PID 135 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR106GVM.SNAI2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 290 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 309 bp overlap
TBX2 2 datasets
ChIP Kelly GSE94822.TBX2.Kelly 307 bp overlap
ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 341 bp overlap
TCF12 2 datasets
ChIP SK-N-SH ENCFF147AHB 192 bp overlap
ChIP SK-N-SH ENCFF147AHB 121 bp overlap
TCF4 2 datasets
ChIP SH-SY5Y GSE96915.TCF4.SH-SY5Y 267 bp overlap
ChIP SK-N-SH ENCFF270OWF 307 bp overlap
TEAD4 4 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 360 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 360 bp overlap
ChIP SK-N-SH ENCFF754TJT 330 bp overlap
ChIP SK-N-SH ENCSR000BUQ.TEAD4.SK-N-SH 260 bp overlap
TFAP2A 1 dataset
ChIP WA09 GSE105081.TFAP2A.WA09 209 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 325 bp overlap
TOX2 2 datasets
ChIP SK-N-SH ENCFF415OYE 177 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR226NRS.TOX2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 251 bp overlap
TSHZ2 2 datasets
ChIP SK-N-SH ENCFF182EBB 294 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 363 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 276 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 276 bp overlap
YY1 2 datasets
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 184 bp overlap
ChIP SK-N-SH ENCSR000BLZ.YY1.SK-N-SH 252 bp overlap
ZFP3 3 datasets
ChIP SK-N-SH ENCFF981MBE 250 bp overlap
ChIP SK-N-SH ENCFF981MBE 51 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR581GUY.ZFP3.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 360 bp overlap
ZNF70 1 dataset
ChIP SK-N-SH ENCFF833ACX 174 bp overlap
ZNF750 1 dataset
ChIP keratinocyte_diff GSE57702.ZNF750.keratinocyte_diff 167 bp overlap