chr3 : 194,294,654 – 194,295,004
350 bp 54 TFs 2 linked genes
This 350 bp open chromatin element is linked to LINC00887 and ENSG00000286317 and is bound by 54 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LINC00887 2.5 kb Proximal Proximity
ENSG00000286317 5.3 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:194,289,654 – 194,300,004
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
54 transcription factors
Source
Cell type
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 350 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 350 bp overlap
BCOR 2 datasets
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 155 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 272 bp overlap
BRD4 4 datasets
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 350 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.BRD4.Kelly_resistant_JQ1 144 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 350 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 178 bp overlap
CBFA2T2 1 dataset
ChIP NCCIT GSE71675.CBFA2T2.NCCIT 106 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 317 bp overlap
CREB1 1 dataset
ChIP GM23338 ENCFF432ZEW 118 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 247 bp overlap
CTCF 1 dataset
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 100 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF031ISE 350 bp overlap
ChIP BLaER1 ENCFF274GAT 195 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 117 bp overlap
ESR1 4 datasets
ChIP MCF-7_PaPE-1 GSE93510.ESR1.MCF-7_PaPE-1 127 bp overlap
ChIP MCF-7_PaPE-1_OA GSE93510.ESR1.MCF-7_PaPE-1_OA 350 bp overlap
ChIP MCF-7_Veh GSE93510.ESR1.MCF-7_Veh 301 bp overlap
ChIP MCF-7_vehicle_45min_I2 GSE99626.ESR1.MCF-7_vehicle_45min_I2 261 bp overlap
EZH2 1 dataset
ChIP neural progenitor cell ENCFF018MKA 350 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 222 bp overlap
GTF2F1 1 dataset
ChIP WA01 ENCSR000EBP.GTF2F1.WA01 113 bp overlap
HAND2 3 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 303 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 350 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 350 bp overlap
HDAC2 2 datasets
ChIP H1 ENCFF353UJQ 350 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 162 bp overlap
HDAC8 1 dataset
ChIP K-562 ENCSR835TCD.HDAC8.K-562 58 bp overlap
JUN 3 datasets
ChIP ESC S34-ESC-d0-JUN-exp2 350 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 350 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 224 bp overlap
KDM1A 1 dataset
ChIP H1 ENCFF696SGD 350 bp overlap
MAX 8 datasets
ChIP H1 ENCFF914VQY 86 bp overlap
ChIP Ishikawa ENCFF064TDQ 350 bp overlap
ChIP Ishikawa ENCFF064TDQ 233 bp overlap
ChIP NB4 ENCFF966MWB 183 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 301 bp overlap
ChIP WTC11 ENCFF223QFY 350 bp overlap
ChIP WTC11 ENCFF223QFY 281 bp overlap
ChIP WTC11 ENCFF223QFY 82 bp overlap
MED1 1 dataset
ChIP HUVEC-C_siERG GSE124892.MED1.HUVEC-C_siERG 158 bp overlap
MXI1 1 dataset
ChIP H1 ENCFF963FZS 223 bp overlap
MYC 2 datasets
ChIP Kelly GSE138295.MYC.Kelly 179 bp overlap
ChIP NB69 GSE138295.MYC.NB69 120 bp overlap
MYCN 9 datasets
ChIP BE2C GSE80151.MYCN.BE2C 163 bp overlap
ChIP CHP-134 GSE129588.MYCN.CHP-134 241 bp overlap
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 341 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 330 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 181 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 280 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 297 bp overlap
ChIP SK-N-BE2-C GSE94822.MYCN.SK-N-BE2-C 239 bp overlap
ChIP SK-N-BE2-C GSE80151.MYCN.SK-N-BE2-C 163 bp overlap
NANOG 2 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 350 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 278 bp overlap
PGR 1 dataset
ChIP myometrium_NP1 GSE137550.PGR.myometrium_NP1 104 bp overlap
PHIP 1 dataset
ChIP HCT-116_ab834 GSE101646.PHIP.HCT-116_ab834 350 bp overlap
PHOX2B 2 datasets
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 211 bp overlap
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 173 bp overlap
POU5F1 3 datasets
ChIP BG03 GSE21614.POU5F1.BG03 149 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 350 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 350 bp overlap
RARA 1 dataset
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 301 bp overlap
RBBP5 2 datasets
ChIP WA01 ENCSR000AQC.RBBP5.WA01 145 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 142 bp overlap
RCOR1 1 dataset
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 193 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 162 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 350 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 350 bp overlap
SCRT2 1 dataset
ChIP HEK293 ENCFF711QQB 350 bp overlap
SIN3A 2 datasets
ChIP WA01 ENCSR000EBO.SIN3A.WA01 168 bp overlap
ChIP hiPSC_IID12 GSE106870.SIN3A.hiPSC_IID12 70 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 238 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 139 bp overlap
SMARCA4 2 datasets
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 114 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 292 bp overlap
SOX2 3 datasets
ChIP H9 GSE46837.SOX2.H9 126 bp overlap
ChIP HNSC GSE69479.SOX2.HNSC 292 bp overlap
ChIP hiPSC_INHI GSE67282.SOX2.hiPSC_INHI 236 bp overlap
SS18 1 dataset
ChIP SYO-1_shCt GSE139053.SS18.SYO-1_shCt 350 bp overlap
STAT3 1 dataset
ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 168 bp overlap
SUZ12 2 datasets
ChIP LNCaP-abl GSE39459.SUZ12.LNCaP-abl 106 bp overlap
ChIP hiPSC_WT GSE124903.SUZ12.hiPSC_WT 208 bp overlap
TAF1 1 dataset
ChIP WA01 ENCSR000BHO.TAF1.WA01 115 bp overlap
TBP 6 datasets
ChIP H1 ENCFF859IIO 316 bp overlap
ChIP H1 ENCFF859IIO 206 bp overlap
ChIP WA01 ENCSR000ECB.TBP.WA01 222 bp overlap
ChIP WA01 ENCSR000ECB.TBP.WA01 65 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 79 bp overlap
ChIP hiPSC_WTa_RNase-neg GSE128135.TBP.hiPSC_WTa_RNase-neg 350 bp overlap
TCF12 1 dataset
ChIP Ishikawa ENCFF467DDW 124 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 326 bp overlap
TCF7L2 1 dataset
ChIP HCT-116 ENCSR000EUV.TCF7L2.HCT-116 227 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 350 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 332 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 350 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 350 bp overlap
ZBTB7A 1 dataset
ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 145 bp overlap
ZNF114 1 dataset
ChIP GM23338 ENCFF631OSW 145 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 315 bp overlap
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