chr3 : 185,249,926 185,250,485
559 bp 51 TFs 3 linked genes
This 559 bp open chromatin element is linked to EHHADH, MAP3K13, and TMEM41A and is bound by 51 transcription factors.
Linked Genes
3 genes
Distance
Link type
Gene Expression Dist. to TSS Distance Link type
EHHADH 3.6 kb Proximal Proximity
MAP3K13 32.9 kb Distal Multiome
TMEM41A 248.9 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:185,244,926 – 185,255,485
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
51 transcription factors
Source
Cell type
AR 5 datasets
ChIP VCaP GSE148358.AR.VCaP 208 bp overlap
ChIP VCaP_R1881 GSE32892.AR.VCaP_R1881 125 bp overlap
ChIP VCaP_R1881_1C26 GSE32892.AR.VCaP_R1881_1C26 147 bp overlap
ChIP VCaP_R1881_1C30 GSE32892.AR.VCaP_R1881_1C30 143 bp overlap
ChIP VCaP_shCt GSE110655.AR.VCaP_shCt 164 bp overlap
ARID1B 1 dataset
ChIP Hep-G2 GSE69566.ARID1B.Hep-G2 294 bp overlap
BAF155 2 datasets
ChIP VCaP_shARID1A GSE110655.BAF155.VCaP_shARID1A 279 bp overlap
ChIP VCaP_shERG GSE110655.BAF155.VCaP_shERG 162 bp overlap
BCOR 1 dataset
ChIP VCaP_EtOH GSE122572.BCOR.VCaP_EtOH 183 bp overlap
CREB1 1 dataset
ChIP LNCaP-abl_SHFOXA1 GSE63034.CREB1.LNCaP-abl_SHFOXA1 224 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 273 bp overlap
FOXA2 4 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 357 bp overlap
ChIP BJ1-hTERT_GATA4 GSE90454.FOXA2.BJ1-hTERT_GATA4 241 bp overlap
ChIP DE DE-FOXA2-1 429 bp overlap
ChIP DE DE-FOXA2-2 467 bp overlap
GATA1 3 datasets
ChIP CD34_ERYTH_BIO GSE29194.GATA1.CD34_ERYTH_BIO 124 bp overlap
ChIP CD34_ERYTH_BMP GSE29194.GATA1.CD34_ERYTH_BMP 110 bp overlap
ChIP K-562 GSE107726.GATA1.K-562 218 bp overlap
GATA2 9 datasets
ChIP CD34_ACY957 GSE60792.GATA2.CD34_ACY957 348 bp overlap
ChIP Hep-G2 ENCSR897LDT.GATA2.Hep-G2 227 bp overlap
ChIP HepG2 ENCFF905PYM 350 bp overlap
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 152 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 379 bp overlap
ChIP VCaP GSE125236.GATA2.VCaP 313 bp overlap
ChIP VCaP_JQ1 GSE125236.GATA2.VCaP_JQ1 257 bp overlap
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 387 bp overlap
ChIP primary-endometrial-stromal-cell_Veh_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_Veh_P2 326 bp overlap
GATA3 5 datasets
ChIP SK-N-SH ENCFF040SSB 365 bp overlap
ChIP SK-N-SH ENCFF040SSB 172 bp overlap
ChIP T-47D GSE51274.GATA3.T-47D 442 bp overlap
ChIP T-47D ENCSR000BMX.GATA3.T-47D 131 bp overlap
ChIP T-47D ENCSR000BMX.GATA3.T-47D 61 bp overlap
GATA3_Nter 2 datasets
ChIP T-47D_CR3flp GSE99479.GATA3_Nter.T-47D_CR3flp 77 bp overlap
ChIP T-47D_flp-ctrl GSE99479.GATA3_Nter.T-47D_flp-ctrl 72 bp overlap
GATA4 8 datasets
ChIP A-549 GSE85002.GATA4.A-549 219 bp overlap
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 366 bp overlap
ChIP DE DE-GATA4-1 558 bp overlap
ChIP DE DE-GATA4-2 559 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 483 bp overlap
ChIP foregut GSE117136.GATA4.foregut 513 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 493 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 478 bp overlap
GATA6 14 datasets
ChIP AGS GSE51705.GATA6.AGS 151 bp overlap
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 260 bp overlap
ChIP DE DE-GATA6-1 550 bp overlap
ChIP DE DE-GATA6-2 559 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 369 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 559 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 368 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 559 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 559 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 395 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 318 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 535 bp overlap
ChIP foregut GSE117136.GATA6.foregut 343 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 301 bp overlap
GMEB1 1 dataset
ChIP HepG2 ENCFF434UDC 315 bp overlap
HNF1A 1 dataset
ChIP HEE_1 GSE76376.HNF1A.HEE_1 112 bp overlap
HNF1B 2 datasets
ChIP PANC-1_HNF1B-OE GSE119930.HNF1B.PANC-1_HNF1B-OE 129 bp overlap
ChIP PDAC GSE64557.HNF1B.PDAC 97 bp overlap
HOXB13 1 dataset
ChIP prostate-cancer_PDX_167 GSE130408.HOXB13.prostate-cancer_PDX_167 431 bp overlap
IKZF1 1 dataset
ChIP K-562 ENCSR395HWC.IKZF1.K-562 112 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 425 bp overlap
KDM1A 4 datasets
ChIP K-562 ENCSR360HRA.KDM1A.K-562 130 bp overlap
ChIP K-562 ENCSR908CMW.KDM1A.K-562 120 bp overlap
ChIP K562 ENCFF128TYE 202 bp overlap
ChIP K562 ENCFF133OLU 187 bp overlap
LIN54 1 dataset
ChIP HepG2 ENCFF662XDE 287 bp overlap
MAFG 1 dataset
ChIP K-562 ENCSR818DQV.MAFG.K-562 290 bp overlap
MED1 1 dataset
ChIP SGBS_TNF GSE64233.MED1.SGBS_TNF 131 bp overlap
NFE2 1 dataset
ChIP K-562 ENCSR000FCC.NFE2.K-562 138 bp overlap
OTX2 1 dataset
ChIP retina_pigment GSE60024.OTX2.retina_pigment 94 bp overlap
PPARG 2 datasets
ChIP HT29_ROSIG_2H GSE77039.PPARG.HT29_ROSIG_2H 70 bp overlap
ChIP Hep-G2 ENCSR130VQL.PPARG.Hep-G2 163 bp overlap
RAD21 1 dataset
ChIP SLK_CTCF-KD GSE138105.RAD21.SLK_CTCF-KD 301 bp overlap
RCOR1 1 dataset
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 152 bp overlap
RELB 1 dataset
ChIP L1236 GSE63736.RELB.L1236 158 bp overlap
RXRA 1 dataset
ChIP JMSU-1 GSE107734.RXRA.JMSU-1 71 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 147 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 559 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 356 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 323 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 523 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 516 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 251 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 247 bp overlap
SMARCA4 1 dataset
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 76 bp overlap
SMARCB1 2 datasets
ChIP Hep-G2 GSE69566.SMARCB1.Hep-G2 242 bp overlap
ChIP Hep-G2 GSE69566.SMARCB1.Hep-G2 119 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 349 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 329 bp overlap
SPI1 2 datasets
ChIP BDMC_donorH GSE128834.SPI1.BDMC_donorH 142 bp overlap
ChIP K-562 GSE70482.SPI1.K-562 124 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 246 bp overlap
TEAD1 3 datasets
ChIP HUCCT1 GSE68296.TEAD1.HUCCT1 65 bp overlap
ChIP HepG2 ENCFF661PNM 51 bp overlap
ChIP MSTO GSE68170.TEAD1.MSTO 82 bp overlap
TEAD4 2 datasets
ChIP T-47D_E2 GSE125594.TEAD4.T-47D_E2 121 bp overlap
ChIP T-47D_Veh GSE125594.TEAD4.T-47D_Veh 101 bp overlap
TRPS1 1 dataset
ChIP T-47D GSE107013.TRPS1.T-47D 172 bp overlap
VDR 1 dataset
ChIP kidney-cortex GSE129585.VDR.kidney-cortex 261 bp overlap
YY1AP1 2 datasets
ChIP T-47D_E2 GSE125594.YY1AP1.T-47D_E2 219 bp overlap
ChIP T-47D_Veh GSE125594.YY1AP1.T-47D_Veh 112 bp overlap
ZBED4 1 dataset
ChIP Hep-G2 ENCSR409PMR.ZBED4.Hep-G2 133 bp overlap
ZGPAT 1 dataset
ChIP Hep-G2 ENCSR704IGU.ZGPAT.Hep-G2 298 bp overlap
ZNF75A 1 dataset
ChIP K562 ENCFF410JIO 295 bp overlap