chr1 : 66,356,509 66,357,521
1,012 bp 65 TFs 0 linked genes
This 1.0 kb open chromatin element has no linked target genes and is bound by 65 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:66,351,509 – 66,362,521
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
65 transcription factors
Source
Cell type
BRCA1 1 dataset
ChIP K-562 ENCSR223MLH.BRCA1.K-562 124 bp overlap
BRD3 2 datasets
ChIP H-1_DE GSE126661.BRD3.H-1_DE 303 bp overlap
ChIP HEK293T GSE39579.BRD3.HEK293T 130 bp overlap
BRD4 7 datasets
ChIP CLL_patient1 GSE109411.BRD4.CLL_patient1 57 bp overlap
ChIP CLL_patient1 GSE109411.BRD4.CLL_patient1 80 bp overlap
ChIP CLL_patient1_4h_CpG GSE109411.BRD4.CLL_patient1_4h_CpG 262 bp overlap
ChIP CLL_patient3 GSE109411.BRD4.CLL_patient3 314 bp overlap
ChIP HUVEC-C_TNF GSE53998.BRD4.HUVEC-C_TNF 238 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 338 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 323 bp overlap
CDK8 1 dataset
ChIP leiomyoma_PT886 GSE128230.CDK8.leiomyoma_PT886 162 bp overlap
CHD2 1 dataset
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 170 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 361 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 135 bp overlap
EP300 6 datasets
ChIP SK-N-SH ENCFF829RWA 377 bp overlap
ChIP SK-N-SH ENCFF829RWA 377 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 171 bp overlap
ChIP neural ENCSR843ZUP.EP300.neural 464 bp overlap
ChIP neural cell ENCFF442QNK 517 bp overlap
ChIP neural cell ENCFF442QNK 517 bp overlap
FOXA1 2 datasets
ChIP breast-cancer_Veh-2858 GSE128018.FOXA1.breast-cancer_Veh-2858 207 bp overlap
ChIP breast-cancer_Veh-2860 GSE128018.FOXA1.breast-cancer_Veh-2860 52 bp overlap
FOXA2 3 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 276 bp overlap
ChIP DE DE-FOXA2-1 355 bp overlap
ChIP DE DE-FOXA2-2 505 bp overlap
GATA2 8 datasets
ChIP SH-SY5Y ENCFF485YIB 405 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 390 bp overlap
ChIP SK-N-SH ENCFF764OZD 417 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 253 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 355 bp overlap
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 184 bp overlap
ChIP primary-endometrial-stromal-cell_IVD_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P2 208 bp overlap
ChIP primary-endometrial-stromal-cell_Veh_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_Veh_P2 364 bp overlap
GATA3 6 datasets
ChIP CLB-Ga GSE90683.GATA3.CLB-Ga 340 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 200 bp overlap
ChIP SH-SY5Y ENCFF475HYF 464 bp overlap
ChIP SH-SY5Y ENCFF475HYF 481 bp overlap
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 440 bp overlap
ChIP SH-SY5Y GSE65664.GATA3.SH-SY5Y 233 bp overlap
GATA4 4 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 193 bp overlap
ChIP DE DE-GATA4-1 1012 bp overlap
ChIP DE DE-GATA4-2 1012 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 431 bp overlap
GATA6 13 datasets
ChIP DE DE-GATA6-1 797 bp overlap
ChIP DE DE-GATA6-2 1012 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 363 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 343 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 431 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 326 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 1012 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 371 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 419 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 463 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 397 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 344 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 259 bp overlap
HAND2 2 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 428 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 228 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 336 bp overlap
JUNB 1 dataset
ChIP CD4 GSE116695.JUNB.CD4 186 bp overlap
KDM1A 1 dataset
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 195 bp overlap
MED1 1 dataset
ChIP HUVEC-C_siERG GSE124892.MED1.HUVEC-C_siERG 407 bp overlap
MXI1 1 dataset
ChIP SK-N-SH ENCFF746HVJ 491 bp overlap
MYB 1 dataset
ChIP DU528 GSE94000.MYB.DU528 111 bp overlap
NANOG 4 datasets
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 116 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 130 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 337 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 312 bp overlap
NCAPH2 1 dataset
ChIP IMR-90_FLAG_OIS GSE118494.NCAPH2.IMR-90_FLAG_OIS 211 bp overlap
NUTM1 1 dataset
ChIP NMC24335 GSE96775.NUTM1.NMC24335 556 bp overlap
Nfe2l2 1 dataset
Motif DE_12h DE_12h-Nfe2l2_MA0150.3 11 bp overlap
PAF1 1 dataset
ChIP HCT-116_ab20662 GSE97527.PAF1.HCT-116_ab20662 140 bp overlap
PDX1 1 dataset
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 177 bp overlap
PHIP 3 datasets
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 367 bp overlap
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 296 bp overlap
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 529 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 595 bp overlap
POLR2A 3 datasets
ChIP GM12891 ENCFF379FCI 501 bp overlap
ChIP GM19099 ENCFF726IBN 113 bp overlap
ChIP neural cell ENCFF604SPB 170 bp overlap
Prdm4 1 dataset
Motif DE_12h DE_12h-Prdm4_MA1647.3 11 bp overlap
RAD21 2 datasets
ChIP neural ENCSR198ZYJ.RAD21.neural 278 bp overlap
ChIP neural cell ENCFF564MOT 505 bp overlap
RCOR1 2 datasets
ChIP SK-N-SH ENCFF518EXB 365 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 238 bp overlap
REST 2 datasets
ChIP neural ENCSR000BTV.REST.neural 588 bp overlap
ChIP neural cell ENCFF882LXX 505 bp overlap
Rarg 1 dataset
Motif DE_12h DE_12h-Rarg_MA0860.1 17 bp overlap
SCRT1 1 dataset
Motif DE_12h DE_12h-SCRT1_MA0743.3 10 bp overlap
SMAD2 2 datasets
Motif DE_12h DE_12h-SMAD2_MA1964.2 6 bp overlap
ChIP endoderm GSE29422.SMAD2.endoderm 157 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 384 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 383 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 277 bp overlap
SMAD2_3 3 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 311 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 332 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 882 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 170 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 156 bp overlap
SMARCA4 5 datasets
ChIP 501-mel_SHCTR GSE61965.SMARCA4.501-mel_SHCTR 232 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 132 bp overlap
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 412 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 344 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 580 bp overlap
SMC3 1 dataset
ChIP neural ENCSR404BPV.SMC3.neural 350 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 594 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 177 bp overlap
STAT5B 2 datasets
ChIP CD8_H9 GSE64713.STAT5B.CD8_H9 54 bp overlap
ChIP CD8_IL2 GSE64713.STAT5B.CD8_IL2 104 bp overlap
TAF1 3 datasets
ChIP neural ENCSR000BTX.TAF1.neural 104 bp overlap
ChIP neural ENCSR000BTX.TAF1.neural 240 bp overlap
ChIP neural cell ENCFF468SPD 546 bp overlap
TAL1 1 dataset
ChIP MOLT-3 GSE59657.TAL1.MOLT-3 62 bp overlap
TBX2 1 dataset
ChIP Kelly GSE94822.TBX2.Kelly 250 bp overlap
TBX5 2 datasets
ChIP cardiomyocyte_5 GSE85628.TBX5.cardiomyocyte_5 279 bp overlap
ChIP hiPSC GSE81585.TBX5.hiPSC 202 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 138 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 147 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 147 bp overlap
ZNF317 1 dataset
Motif DE_12h DE_12h-ZNF317_MA1593.2 8 bp overlap
ZNF335 2 datasets
ChIP HEK293 ENCFF784SLD 409 bp overlap
ChIP HEK293 ENCFF784SLD 206 bp overlap
ZNF770 1 dataset
Motif DE_12h DE_12h-ZNF770_MA2099.1 8 bp overlap
ZNF85 1 dataset
Motif DE_12h DE_12h-ZNF85_MA1720.2 12 bp overlap
ZSCAN4 1 dataset
Motif DE_12h DE_12h-ZSCAN4_MA1155.1 15 bp overlap