chr3 : 149,661,991 149,662,635
644 bp 58 TFs 2 linked genes
This 644 bp open chromatin element is linked to WWTR1-AS1 and WWTR1 and is bound by 58 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
WWTR1-AS1 3.8 kb Proximal Proximity
WWTR1 4.0 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:149,656,991 – 149,667,635
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
58 transcription factors
Source
Cell type
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 287 bp overlap
ATF2 7 datasets
ChIP GM12878 ENCSR961PPA.ATF2.GM12878 87 bp overlap
ChIP HEK293 ENCFF194VKZ 163 bp overlap
ChIP HEK293 ENCSR217HTK.ATF2.HEK293 151 bp overlap
ChIP Hep-G2 ENCSR047BUZ.ATF2.Hep-G2 160 bp overlap
ChIP HepG2 ENCFF955VER 124 bp overlap
ChIP K-562 ENCSR869IUD.ATF2.K-562 179 bp overlap
ChIP K562 ENCFF139ZZG 144 bp overlap
ATF3 1 dataset
ChIP K-562 ENCSR028UIU.ATF3.K-562 149 bp overlap
ATF7 5 datasets
ChIP GM12878 ENCFF037PYH 211 bp overlap
ChIP GM12878 ENCSR014YCR.ATF7.GM12878 119 bp overlap
ChIP Hep-G2 ENCSR545FXC.ATF7.Hep-G2 152 bp overlap
ChIP MCF-7 ENCFF578WKB 174 bp overlap
ChIP MCF-7 ENCSR866QPZ.ATF7.MCF-7 134 bp overlap
BRD2 1 dataset
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 119 bp overlap
BRD3 1 dataset
ChIP HEK293T GSE39579.BRD3.HEK293T 140 bp overlap
BRD4 1 dataset
ChIP HAP1 GSE108387.BRD4.HAP1 623 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 201 bp overlap
CREB1 2 datasets
ChIP MCF-7 ENCFF341ZEM 159 bp overlap
ChIP MCF-7 ENCSR620DUQ.CREB1.MCF-7 170 bp overlap
CTCF 1 dataset
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 369 bp overlap
ELF1 1 dataset
ChIP SK-N-MC_SHFLI_96H GSE61944.ELF1.SK-N-MC_SHFLI_96H 227 bp overlap
EMSY 1 dataset
ChIP K562 ENCFF511ZZZ 388 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 274 bp overlap
FOS 2 datasets
ChIP IMR-90 ENCSR124AIG.FOS.IMR-90 192 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EVU.FOS.endothelial_umbilical-vein 187 bp overlap
FOSL1 3 datasets
ChIP K-562 ENCSR239ZLZ.FOSL1.K-562 262 bp overlap
ChIP K562 ENCFF455MKD 498 bp overlap
ChIP K562 ENCFF455MKD 284 bp overlap
FOSL2 2 datasets
ChIP A-549 ENCSR448TVS.FOSL2.A-549 61 bp overlap
ChIP A549 ENCFF195CES 148 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 644 bp overlap
ChIP DE DE-FOXA2-2 629 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 627 bp overlap
ChIP DE DE-GATA4-2 624 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 584 bp overlap
GATA6 12 datasets
ChIP AGS GSE51705.GATA6.AGS 281 bp overlap
ChIP DE DE-GATA6-1 627 bp overlap
ChIP DE DE-GATA6-2 644 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 384 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 490 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 525 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 550 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 512 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 591 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 218 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 491 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 588 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 147 bp overlap
HOXB13 1 dataset
ChIP G-401 GSE65381.HOXB13.G-401 295 bp overlap
JUN 5 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 412 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 424 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 429 bp overlap
ChIP endothelial cell of umbilical vein ENCFF791BMV 252 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EFA.JUN.endothelial_umbilical-vein 124 bp overlap
LIN54 1 dataset
Motif DE_36h DE_36h-LIN54_MA0619.2 7 bp overlap
MAFG 2 datasets
ChIP K-562 ENCSR818DQV.MAFG.K-562 243 bp overlap
ChIP K562 ENCFF455EEO 372 bp overlap
MAFK 1 dataset
ChIP WA01 ENCSR000EBS.MAFK.WA01 193 bp overlap
MED1 1 dataset
ChIP U-87MG GSE36354.MED1.U-87MG 175 bp overlap
MED26 1 dataset
ChIP HCT-116_aux GSE121355.MED26.HCT-116_aux 259 bp overlap
NANOG 3 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 440 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 291 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 343 bp overlap
NFE2L1 1 dataset
ChIP WTC11 ENCFF644BPU 306 bp overlap
NUTM1 1 dataset
ChIP NMC24335 GSE96775.NUTM1.NMC24335 597 bp overlap
ONECUT2 1 dataset
ChIP AGS_Overexpression GSE113045.ONECUT2.AGS_Overexpression 245 bp overlap
PHIP 1 dataset
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 374 bp overlap
POU5F1 6 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 125 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 459 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 559 bp overlap
ChIP OSKM GSE81899.POU5F1.OSKM 185 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 589 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 408 bp overlap
PRDM1 1 dataset
ChIP HEK293 ENCFF302TBP 356 bp overlap
RAD21 4 datasets
ChIP HAP1 GSE152721.RAD21.HAP1 457 bp overlap
ChIP HAP1 GSE126634.RAD21.HAP1 323 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 370 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 234 bp overlap
SETDB1 2 datasets
ChIP HEK293 ENCSR348AGV.SETDB1.HEK293 348 bp overlap
ChIP U2OS ENCSR000EYD.SETDB1.U2OS 335 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 342 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 274 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 426 bp overlap
SMARCA4 4 datasets
ChIP A-549_AG15725 GSE132290.SMARCA4.A-549_AG15725 173 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCA4.TTC-1240_R377H 124 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 369 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 372 bp overlap
SMARCC1 1 dataset
ChIP Aska-SS_shSSX GSE108025.SMARCC1.Aska-SS_shSSX 207 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 644 bp overlap
SPI1 1 dataset
ChIP K-562 ENCSR000BGW.SPI1.K-562 117 bp overlap
SREBF1 1 dataset
Motif DE_36h DE_36h-SREBF1_MA0595.1 10 bp overlap
SREBF2 1 dataset
Motif DE_36h DE_36h-SREBF2_MA0596.1 10 bp overlap
TRIM28 2 datasets
ChIP HEK293 ENCSR618HNF.TRIM28.HEK293 394 bp overlap
ChIP U2OS ENCSR000EYC.TRIM28.U2OS 244 bp overlap
Yy1 1 dataset
Motif DE_36h DE_36h-Yy1_MA0095.4 8 bp overlap
ZEB2 1 dataset
ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 207 bp overlap
ZNF263 2 datasets
ChIP Hep-G2 ENCSR313MMD.ZNF263.Hep-G2 201 bp overlap
ChIP HepG2 ENCFF626SSV 381 bp overlap
ZNF532 1 dataset
ChIP NMC24335 GSE96775.ZNF532.NMC24335 262 bp overlap
ZNF600 1 dataset
ChIP HEK293 ENCFF785JSX 403 bp overlap
ZNF629 2 datasets
ChIP HEK293 ENCFF096ELQ 110 bp overlap
ChIP HEK293 ENCSR351NON.ZNF629.HEK293 238 bp overlap
ZNF770 2 datasets
ChIP HEK293 ENCSR242BGR.ZNF770.HEK293 166 bp overlap
ChIP HEK293 GSE76494.ZNF770.HEK293 107 bp overlap