chr1 : 64,517,506 64,518,244
738 bp 61 TFs 2 linked genes
This 738 bp open chromatin element is linked to CACHD1 and RAVER2 and is bound by 61 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
CACHD1 47.6 kb Distal Multiome
RAVER2 227.4 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:64,512,506 – 64,523,244
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
61 transcription factors
Source
Cell type
ATF2 4 datasets
ChIP Hep-G2 ENCSR047BUZ.ATF2.Hep-G2 431 bp overlap
ChIP HepG2 ENCFF955VER 381 bp overlap
ChIP K-562 ENCSR869IUD.ATF2.K-562 205 bp overlap
ChIP WA01 ENCSR000BQU.ATF2.WA01 102 bp overlap
BRCA1 1 dataset
ChIP K-562 ENCSR223MLH.BRCA1.K-562 234 bp overlap
BRD2 1 dataset
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 117 bp overlap
BRD4 3 datasets
ChIP CD4_JG1 GSE33281.BRD4.CD4_JG1 180 bp overlap
ChIP HeLa_JQ1 GSE151038.BRD4.HeLa_JQ1 121 bp overlap
ChIP SUM159PT_100nMtrametinib_72h GSE87418.BRD4.SUM159PT_100nMtrametinib_72h 51 bp overlap
CEBPA 1 dataset
ChIP SGBS GSE41629.CEBPA.SGBS 128 bp overlap
CSDC2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR474KBG.CSDC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 147 bp overlap
DUX4 1 dataset
ChIP WA01 GSE94322.DUX4.WA01 426 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 545 bp overlap
EZH2 1 dataset
ChIP LNCaP GSE39459.EZH2.LNCaP 221 bp overlap
FOXA1 1 dataset
ChIP PDAC_KOKLF5 GSE64557.FOXA1.PDAC_KOKLF5 71 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 738 bp overlap
ChIP DE DE-FOXA2-2 703 bp overlap
FOXM1 2 datasets
ChIP SK-N-SH ENCFF404RGX 81 bp overlap
ChIP SK-N-SH ENCFF404RGX 281 bp overlap
GATA3 1 dataset
ChIP SK-N-SH ENCFF040SSB 365 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 714 bp overlap
ChIP DE DE-GATA4-2 738 bp overlap
ChIP foregut GSE117136.GATA4.foregut 286 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 738 bp overlap
ChIP DE DE-GATA6-2 738 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 601 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 549 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 534 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 607 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 647 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 657 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 536 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 277 bp overlap
HOXB8 1 dataset
ChIP CFPAC-1_HOXB8-OE GSE119930.HOXB8.CFPAC-1_HOXB8-OE 94 bp overlap
JUN 4 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 434 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 381 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 392 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 571 bp overlap
LEF1 1 dataset
ChIP hESC_WNT3A GSE64758.LEF1.hESC_WNT3A 268 bp overlap
MAX 1 dataset
ChIP SK-N-SH ENCSR000BVD.MAX.SK-N-SH 98 bp overlap
MED1 8 datasets
ChIP hMSC-TERT4_4h GSE104537.MED1.hMSC-TERT4_4h 121 bp overlap
ChIP hMSC-TERT4_D14 GSE104537.MED1.hMSC-TERT4_D14 97 bp overlap
ChIP hMSC-TERT4_adipocyte-4H GSE113253.MED1.hMSC-TERT4_adipocyte-4H 133 bp overlap
ChIP hMSC-TERT4_adipocyte-D7 GSE113253.MED1.hMSC-TERT4_adipocyte-D7 119 bp overlap
ChIP hMSC-TERT4_osteoblast-4H GSE113253.MED1.hMSC-TERT4_osteoblast-4H 134 bp overlap
ChIP hMSC-TERT4_osteoblast-D1 GSE113253.MED1.hMSC-TERT4_osteoblast-D1 132 bp overlap
ChIP hMSC-TERT4_osteoblast-D3 GSE113253.MED1.hMSC-TERT4_osteoblast-D3 54 bp overlap
ChIP hMSC-TERT4_undifferentiated GSE113253.MED1.hMSC-TERT4_undifferentiated 93 bp overlap
MEIS1 2 datasets
Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap
Motif DE_72h DE_72h-MEIS1_MA0498.3 5 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 204 bp overlap
MYCN 4 datasets
ChIP SHEP-21N GSE80151.MYCN.SHEP-21N 200 bp overlap
ChIP SHEP-21N GSE80151.MYCN.SHEP-21N 66 bp overlap
ChIP SHEP-21N_24h GSE80151.MYCN.SHEP-21N_24h 68 bp overlap
ChIP SHEP-21N_DOX_0H GSE80151.MYCN.SHEP-21N_DOX_0H 200 bp overlap
NANOG 7 datasets
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 294 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 247 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 738 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 381 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 264 bp overlap
ChIP hESC GSE18292.NANOG.hESC 165 bp overlap
NFIA 1 dataset
Motif DE_60h DE_60h-NFIA_MA0670.2 6 bp overlap
NFIC 1 dataset
Motif DE_60h DE_60h-NFIC_MA0161.3 7 bp overlap
NFIX 1 dataset
Motif DE_60h DE_60h-NFIX_MA0671.2 6 bp overlap
NIPBL 2 datasets
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 298 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 316 bp overlap
NKX2-1 1 dataset
ChIP H9_derived-cIN GSE99937.NKX2-1.H9_derived-cIN 151 bp overlap
NR6A1 1 dataset
Motif DE_60h DE_60h-NR6A1_MA1541.2 14 bp overlap
NUTM1 1 dataset
ChIP NMC24335 GSE96775.NUTM1.NMC24335 560 bp overlap
ONECUT1 2 datasets
Motif DE_60h DE_60h-ONECUT1_MA0679.3 9 bp overlap
Motif DE_72h DE_72h-ONECUT1_MA0679.3 9 bp overlap
POU5F1 2 datasets
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 533 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 254 bp overlap
PSIP1 1 dataset
ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 271 bp overlap
RELA 1 dataset
ChIP SGBS GSE64233.RELA.SGBS 87 bp overlap
REST 3 datasets
ChIP neural ENCSR000BTV.REST.neural 215 bp overlap
ChIP neural cell ENCFF882LXX 505 bp overlap
ChIP neural cell ENCFF882LXX 302 bp overlap
RUVBL2 2 datasets
ChIP U2OS GSE130602.RUVBL2.U2OS 225 bp overlap
ChIP U2OS_DMSO GSE130507.RUVBL2.U2OS_DMSO 249 bp overlap
RXRA 1 dataset
ChIP SK-N-SH ENCFF893DLM 87 bp overlap
Rarg 2 datasets
Motif DE_60h DE_60h-Rarg_MA0860.1 17 bp overlap
Motif DE_72h DE_72h-Rarg_MA0860.1 17 bp overlap
Runx1 1 dataset
Motif DE_60h DE_60h-Runx1_MA0002.3 9 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 686 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 554 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 425 bp overlap
SMAD3 3 datasets
ChIP LX2_CALCIPOTRIOL_TGFB1 GSE38103.SMAD3.LX2_CALCIPOTRIOL_TGFB1 117 bp overlap
ChIP PC-3_hypoxia GSE106305.SMAD3.PC-3_hypoxia 124 bp overlap
ChIP endoderm GSE29422.SMAD3.endoderm 239 bp overlap
SMARCA2 3 datasets
ChIP NPC_K755R-pos GSE122631.SMARCA2.NPC_K755R-pos 52 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA2.NPC_K755R-siCT 140 bp overlap
ChIP NPC_R1159Q_AM GSE122631.SMARCA2.NPC_R1159Q_AM 387 bp overlap
SMARCA4 1 dataset
ChIP 501-mel_SHSOX10 GSE61965.SMARCA4.501-mel_SHSOX10 300 bp overlap
SMARCC1 2 datasets
ChIP SYO-1 GSE108025.SMARCC1.SYO-1 62 bp overlap
ChIP SYO-1_shCt GSE139053.SMARCC1.SYO-1_shCt 654 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 521 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 528 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 127 bp overlap
SS18 6 datasets
ChIP Aska-SS_BAF47KO1 GSE108025.SS18.Aska-SS_BAF47KO1 738 bp overlap
ChIP SYO-1 GSE108025.SS18.SYO-1 738 bp overlap
ChIP SYO-1_shCt GSE139053.SS18.SYO-1_shCt 738 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SS18.SYO-1_shRING1A-B 276 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SS18.SYO-1_shRING1A-B 165 bp overlap
ChIP SYO-1_shSSX GSE108025.SS18.SYO-1_shSSX 609 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 385 bp overlap
TAL1 1 dataset
ChIP PRIMA2 GSE33850.TAL1.PRIMA2 196 bp overlap
TEAD4 1 dataset
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 198 bp overlap
TRIM28 1 dataset
ChIP HEK293 ENCFF582MWI 374 bp overlap
TWIST1 3 datasets
ChIP SHEP-21N GSE80151.TWIST1.SHEP-21N 54 bp overlap
ChIP SHEP-21N_24h GSE80151.TWIST1.SHEP-21N_24h 85 bp overlap
ChIP SHEP-21N_DOX_0H GSE80151.TWIST1.SHEP-21N_DOX_0H 54 bp overlap
ZFP3 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR581GUY.ZFP3.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 330 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 471 bp overlap
ZNF532 1 dataset
ChIP NMC24335 GSE96775.ZNF532.NMC24335 346 bp overlap
ZNF573 1 dataset
ChIP HEK293T GSE78099.ZNF573.HEK293T 185 bp overlap