chr3 : 126,887,820 126,888,945
1,125 bp 92 TFs 3 linked genes
This 1.1 kb open chromatin element is linked to PLXNA1, CHCHD6, and TXNRD3 and is bound by 92 transcription factors.
Linked Genes
3 genes
Gene Expression Dist. to TSS Distance Link type
PLXNA1 94.3 kb Distal Multiome
CHCHD6 184.2 kb Distal Multiome
TXNRD3 233.3 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:126,882,820 – 126,893,945
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
92 transcription factors
Source
Cell type
AR 2 datasets
ChIP LNCaP_R1881 GSE69043.AR.LNCaP_R1881 190 bp overlap
ChIP VCaP GSE148358.AR.VCaP 198 bp overlap
ARID5B 1 dataset
ChIP Jurkat GSE97512.ARID5B.Jurkat 240 bp overlap
ASCL1 4 datasets
ChIP NCI-H128 GSE69394.ASCL1.NCI-H128 231 bp overlap
ChIP NCI-H2107 GSE69394.ASCL1.NCI-H2107 273 bp overlap
ChIP NCI-H889 GSE69394.ASCL1.NCI-H889 242 bp overlap
ChIP SCLC_ASCLP GSE61197.ASCL1.SCLC_ASCLP 298 bp overlap
ASXL3 2 datasets
ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 223 bp overlap
ChIP NCI-H1963_Ab2 GSE145028.ASXL3.NCI-H1963_Ab2 470 bp overlap
BAP1 1 dataset
ChIP NCI-H1963_shASXL3 GSE145028.BAP1.NCI-H1963_shASXL3 433 bp overlap
BCL11A 1 dataset
ChIP HUDEP-2_90min GSE104676.BCL11A.HUDEP-2_90min 68 bp overlap
BRD3 1 dataset
ChIP H-1_DE GSE126661.BRD3.H-1_DE 263 bp overlap
BRD4 5 datasets
ChIP Jurkat GSE83777.BRD4.Jurkat 307 bp overlap
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 1023 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.BRD4.Kelly_resistant_JQ1 609 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 203 bp overlap
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 301 bp overlap
CDK7 3 datasets
ChIP Jurkat GSE83777.CDK7.Jurkat 206 bp overlap
ChIP Jurkat GSE83777.CDK7.Jurkat 209 bp overlap
ChIP Jurkat_DMSO GSE60027.CDK7.Jurkat_DMSO 332 bp overlap
CTCF 1 dataset
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 222 bp overlap
CTCFL 3 datasets
ChIP Kelly_resistant GSE103030.CTCFL.Kelly_resistant 388 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.CTCFL.Kelly_resistant_JQ1 496 bp overlap
ChIP Kelly_shLUC-res GSE115248.CTCFL.Kelly_shLUC-res 163 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF364PUR 157 bp overlap
ELF2 2 datasets
Motif DE_48h DE_48h-ELF2_MA1483.3 10 bp overlap
Motif DE_60h DE_60h-ELF2_MA1483.3 10 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 348 bp overlap
ERF 2 datasets
Motif DE_48h DE_48h-ERF_MA0760.2 9 bp overlap
Motif DE_60h DE_60h-ERF_MA0760.2 9 bp overlap
ERF::FOXI1 2 datasets
Motif DE_48h DE_48h-ERFFOXI1_MA1935.2 10 bp overlap
Motif DE_60h DE_60h-ERFFOXI1_MA1935.2 10 bp overlap
ERF::FOXO1 2 datasets
Motif DE_48h DE_48h-ERFFOXO1_MA1936.2 12 bp overlap
Motif DE_60h DE_60h-ERFFOXO1_MA1936.2 12 bp overlap
ERG 1 dataset
ChIP Jurkat GSE49091.ERG.Jurkat 247 bp overlap
ESR1 3 datasets
ChIP MCF-7_E2 GSE14664.ESR1.MCF-7_E2 133 bp overlap
ChIP MCF-7_E2+4OHT_SRC-3 GSE119702.ESR1.MCF-7_E2+4OHT_SRC-3 166 bp overlap
ChIP MCF-7_SRC3_OHT GSE119702.ESR1.MCF-7_SRC3_OHT 166 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 727 bp overlap
ETS1 2 datasets
Motif DE_48h DE_48h-ETS1_MA0098.4 9 bp overlap
Motif DE_60h DE_60h-ETS1_MA0098.4 9 bp overlap
ETS2 2 datasets
Motif DE_48h DE_48h-ETS2_MA1484.2 9 bp overlap
Motif DE_60h DE_60h-ETS2_MA1484.2 9 bp overlap
ETV1 2 datasets
Motif DE_48h DE_48h-ETV1_MA0761.3 9 bp overlap
Motif DE_60h DE_60h-ETV1_MA0761.3 9 bp overlap
ETV2 2 datasets
Motif DE_48h DE_48h-ETV2_MA0762.2 9 bp overlap
Motif DE_60h DE_60h-ETV2_MA0762.2 9 bp overlap
ETV2::FOXI1 2 datasets
Motif DE_48h DE_48h-ETV2FOXI1_MA1942.2 11 bp overlap
Motif DE_60h DE_60h-ETV2FOXI1_MA1942.2 11 bp overlap
ETV5::FOXI1 2 datasets
Motif DE_48h DE_48h-ETV5FOXI1_MA1946.2 12 bp overlap
Motif DE_60h DE_60h-ETV5FOXI1_MA1946.2 12 bp overlap
Erg 2 datasets
Motif DE_48h DE_48h-Erg_MA0474.4 10 bp overlap
Motif DE_60h DE_60h-Erg_MA0474.4 10 bp overlap
FLI1::FOXI1 2 datasets
Motif DE_48h DE_48h-FLI1FOXI1_MA1950.2 11 bp overlap
Motif DE_60h DE_60h-FLI1FOXI1_MA1950.2 11 bp overlap
FOXA2 4 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 238 bp overlap
ChIP Caco-2 GSE66218.FOXA2.Caco-2 135 bp overlap
ChIP DE DE-FOXA2-1 805 bp overlap
ChIP DE DE-FOXA2-2 693 bp overlap
FOXJ2::ELF1 2 datasets
Motif DE_48h DE_48h-FOXJ2ELF1_MA1952.2 11 bp overlap
Motif DE_60h DE_60h-FOXJ2ELF1_MA1952.2 11 bp overlap
FOXO1::ELF1 2 datasets
Motif DE_48h DE_48h-FOXO1ELF1_MA1953.2 13 bp overlap
Motif DE_60h DE_60h-FOXO1ELF1_MA1953.2 13 bp overlap
FOXO1::ELK1 2 datasets
Motif DE_48h DE_48h-FOXO1ELK1_MA1954.2 13 bp overlap
Motif DE_60h DE_60h-FOXO1ELK1_MA1954.2 13 bp overlap
FOXO1::ELK3 2 datasets
Motif DE_48h DE_48h-FOXO1ELK3_MA1955.2 13 bp overlap
Motif DE_60h DE_60h-FOXO1ELK3_MA1955.2 13 bp overlap
FOXO1::FLI1 2 datasets
Motif DE_48h DE_48h-FOXO1FLI1_MA1956.2 13 bp overlap
Motif DE_60h DE_60h-FOXO1FLI1_MA1956.2 13 bp overlap
GABPA 2 datasets
Motif DE_48h DE_48h-GABPA_MA0062.4 10 bp overlap
Motif DE_60h DE_60h-GABPA_MA0062.4 10 bp overlap
GATA1 5 datasets
ChIP K-562 GSE107726.GATA1.K-562 330 bp overlap
ChIP K-562 ENCSR000EFT.GATA1.K-562 161 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 148 bp overlap
ChIP K562 ENCFF094CMK 251 bp overlap
ChIP erythroid-progenitor GSE124163.GATA1.erythroid-progenitor 144 bp overlap
GATA2 11 datasets
ChIP CD34_ACY957 GSE60792.GATA2.CD34_ACY957 502 bp overlap
ChIP K-562 ENCSR000DKA.GATA2.K-562 324 bp overlap
ChIP K-562 ENCSR000EWG.GATA2.K-562 116 bp overlap
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 238 bp overlap
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 445 bp overlap
ChIP SH-SY5Y ENCFF485YIB 405 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 390 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 189 bp overlap
ChIP VCaP GSE125236.GATA2.VCaP 219 bp overlap
ChIP VCaP_JQ1 GSE125236.GATA2.VCaP_JQ1 228 bp overlap
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 191 bp overlap
GATA3 12 datasets
ChIP CCRF-CEM GSE33850.GATA3.CCRF-CEM 158 bp overlap
ChIP CD4_TH2 GSE72266.GATA3.CD4_TH2 251 bp overlap
ChIP Jurkat GSE29180.GATA3.Jurkat 601 bp overlap
ChIP Jurkat GSE76181.GATA3.Jurkat 511 bp overlap
ChIP Jurkat GSE120063.GATA3.Jurkat 440 bp overlap
ChIP Jurkat GSE68976.GATA3.Jurkat 391 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 267 bp overlap
ChIP MCF-7_E2 GSE81510.GATA3.MCF-7_E2 176 bp overlap
ChIP MCF-7_E2_Dex GSE81510.GATA3.MCF-7_E2_Dex 191 bp overlap
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 328 bp overlap
ChIP SK-N-SH ENCFF040SSB 187 bp overlap
ChIP thymocyte GSE71751.GATA3.thymocyte 311 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 965 bp overlap
ChIP DE DE-GATA4-2 1099 bp overlap
ChIP YCC-3 GSE51705.GATA4.YCC-3 301 bp overlap
ChIP foregut GSE117136.GATA4.foregut 512 bp overlap
GATA5 2 datasets
Motif DE_48h DE_48h-GATA5_MA0766.3 8 bp overlap
Motif DE_60h DE_60h-GATA5_MA0766.3 8 bp overlap
GATA6 15 datasets
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 222 bp overlap
ChIP DE DE-GATA6-1 905 bp overlap
ChIP DE DE-GATA6-2 996 bp overlap
Motif DE_48h DE_48h-GATA6_MA1104.3 8 bp overlap
Motif DE_60h DE_60h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 646 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 742 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 1028 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 988 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 965 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 975 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 304 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 977 bp overlap
ChIP foregut GSE117136.GATA6.foregut 540 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 307 bp overlap
Gata3 2 datasets
Motif DE_48h DE_48h-Gata3_MA0037.5 8 bp overlap
Motif DE_60h DE_60h-Gata3_MA0037.5 8 bp overlap
HAND2 1 dataset
ChIP Kelly GSE94822.HAND2.Kelly 265 bp overlap
IKZF1 2 datasets
Motif DE_48h DE_48h-IKZF1_MA1508.2 8 bp overlap
Motif DE_60h DE_60h-IKZF1_MA1508.2 8 bp overlap
IKZF2 2 datasets
Motif DE_48h DE_48h-IKZF2_MA2326.1 6 bp overlap
Motif DE_60h DE_60h-IKZF2_MA2326.1 6 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 197 bp overlap
Ikzf3 2 datasets
Motif DE_48h DE_48h-Ikzf3_MA1992.2 9 bp overlap
Motif DE_60h DE_60h-Ikzf3_MA1992.2 9 bp overlap
JUN 2 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 354 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 275 bp overlap
LMO1 1 dataset
ChIP Jurkat GSE94391.LMO1.Jurkat 350 bp overlap
MAX 3 datasets
ChIP NCI-H128 GSE41105.MAX.NCI-H128 435 bp overlap
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 441 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 430 bp overlap
MAZ 1 dataset
ChIP HEK293 GSE76494.MAZ.HEK293 189 bp overlap
MED1 1 dataset
ChIP NCI-H2171 GSE36354.MED1.NCI-H2171 221 bp overlap
MYB 1 dataset
ChIP Jurkat GSE59657.MYB.Jurkat 566 bp overlap
MYC 2 datasets
ChIP NCI-H128 GSE41105.MYC.NCI-H128 155 bp overlap
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 404 bp overlap
MYCN 4 datasets
ChIP CHP-134 GSE129588.MYCN.CHP-134 493 bp overlap
ChIP CHP-134 GSE129588.MYCN.CHP-134 162 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 297 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 241 bp overlap
NEUROD1 2 datasets
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 225 bp overlap
ChIP NCI-H524 GSE69394.NEUROD1.NCI-H524 165 bp overlap
NKX2-5 2 datasets
ChIP hESC_ab3584 GSE89457.NKX2-5.hESC_ab3584 253 bp overlap
ChIP hESC_sc-14033 GSE89457.NKX2-5.hESC_sc-14033 176 bp overlap
OSR2 1 dataset
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 205 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 385 bp overlap
RELA 1 dataset
ChIP LNCaP_SIFOXA1_TNFA GSE83860.RELA.LNCaP_SIFOXA1_TNFA 122 bp overlap
RUNX1 2 datasets
ChIP Jurkat GSE76181.RUNX1.Jurkat 275 bp overlap
ChIP Jurkat GSE68976.RUNX1.Jurkat 258 bp overlap
RUNX2 1 dataset
ChIP PER-117 GSE151819.RUNX2.PER-117 318 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 228 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 173 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 677 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 617 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 492 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 498 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 442 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 1012 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 966 bp overlap
SMAD3 2 datasets
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 158 bp overlap
ChIP endoderm GSE29422.SMAD3.endoderm 232 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 244 bp overlap
SMARCA4 3 datasets
ChIP J-Lat_GFP-Clone-A72_DMSO GSE100266.SMARCA4.J-Lat_GFP-Clone-A72_DMSO 292 bp overlap
ChIP J-Lat_GFP-Clone-A72_JQ1 GSE100266.SMARCA4.J-Lat_GFP-Clone-A72_JQ1 341 bp overlap
ChIP NGP GSE134626.SMARCA4.NGP 356 bp overlap
SMC1A-B 1 dataset
ChIP Kelly_shLUC-res GSE115248.SMC1A-B.Kelly_shLUC-res 434 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 629 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 1125 bp overlap
SOX6 1 dataset
ChIP K-562 ENCSR788RSW.SOX6.K-562 231 bp overlap
SPI1 1 dataset
ChIP CTV-1_delQ GSE128835.SPI1.CTV-1_delQ 190 bp overlap
SPIC 2 datasets
Motif DE_48h DE_48h-SPIC_MA0687.2 13 bp overlap
Motif DE_60h DE_60h-SPIC_MA0687.2 13 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 244 bp overlap
TAL1 1 dataset
ChIP Jurkat GSE29180.TAL1.Jurkat 166 bp overlap
TBX5 6 datasets
ChIP G296S GSE85628.TBX5.G296S 296 bp overlap
ChIP G296S_2 GSE85628.TBX5.G296S_2 296 bp overlap
ChIP G296S_4 GSE85628.TBX5.G296S_4 416 bp overlap
ChIP cardiomyocyte_5 GSE85628.TBX5.cardiomyocyte_5 218 bp overlap
ChIP cardiomyocyte_7 GSE85628.TBX5.cardiomyocyte_7 218 bp overlap
ChIP hiPSC GSE81585.TBX5.hiPSC 243 bp overlap
TCF12 1 dataset
ChIP Jurkat GSE29180.TCF12.Jurkat 431 bp overlap
TRPS1 2 datasets
Motif DE_48h DE_48h-TRPS1_MA1970.2 8 bp overlap
Motif DE_60h DE_60h-TRPS1_MA1970.2 8 bp overlap
ZBTB42 1 dataset
ChIP HEK293 GSE76494.ZBTB42.HEK293 144 bp overlap
ZFX 2 datasets
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 255 bp overlap
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 59 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 471 bp overlap
ZIM3 2 datasets
Motif DE_48h DE_48h-ZIM3_MA1709.2 11 bp overlap
Motif DE_60h DE_60h-ZIM3_MA1709.2 11 bp overlap
ZMIZ1 2 datasets
ChIP THP-6_shCtrl GSE138516.ZMIZ1.THP-6_shCtrl 337 bp overlap
ChIP THP-6_shEts1 GSE138516.ZMIZ1.THP-6_shEts1 423 bp overlap
ZNF175 2 datasets
Motif DE_48h DE_48h-ZNF175_MA2332.1 9 bp overlap
Motif DE_60h DE_60h-ZNF175_MA2332.1 9 bp overlap
ZNF582 2 datasets
Motif DE_48h DE_48h-ZNF582_MA1983.2 19 bp overlap
Motif DE_60h DE_60h-ZNF582_MA1983.2 19 bp overlap