TXNRD3
thioredoxin reductase 3 | TGR, TR2, TR2IT1, TRXR3, TXNR3, TXNRD3NT1, TXNRD3IT1, TXNRD3NB

The protein encoded by this gene belongs to the pyridine nucleotide-disulfide oxidoreductase family, and is a member of the thioredoxin (Trx) system. Three thioredoxin reductase (TrxR) isozymes are found in mammals. TrxRs are selenocysteine-containing flavoenzymes, which reduce thioredoxins, as well as other substrates, and play a key role in redox homoeostasis. This gene encodes the third TrxR, which unlike the other two isozymes, contains an additional N-terminal glutaredoxin (Grx) domain, and shows highest expression in testis. The Grx domain allows this isozyme to participate in both Trx and glutathione systems. It functions as a homodimer containing FAD, and selenocysteine (Sec) at the active site. Sec is encoded by UGA codon that normally signals translation termination. The 3' UTRs of selenoprotein mRNAs contain a conserved stem-loop structure, the Sec insertion sequence (SECIS) element, which is necessary for the recognition of UGA as a Sec codon rather than as a stop signal. Alternatively spliced transcript variants have been found for this gene. Experimental evidence suggests the use of a non-AUG (CUG) codon as a translation initiation codon (PMID:20018845). [provided by RefSeq, Aug 2017]

Member of: DE-8 DE-8.2 Developmental clusters: GC7
Biological processes 20 terms
Expression (TPM)
TXNRD3 — as a Regulated Gene

TFs regulating TXNRD3 0 TFs

Transcription factors with Perturb-seq knockdown data for TXNRD3. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = TXNRD3 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.

Data: Effect:
TF Mean coef Binding Outlier TF→Gene link

Elements linked to TXNRD3

Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of TXNRD3, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.

Accessibility Element Dist. to TSS Link type TFs
chr3:126,355,690–126,356,616 299.1 kb Distal (>10kb) Multiome 733
chr3:126,356,733–126,358,455 297.5 kb Distal (>10kb) Multiome 534
chr3:126,389,127–126,389,605 265.7 kb Distal (>10kb) Multiome 700
chr3:126,394,617–126,395,324 260.2 kb Distal (>10kb) Multiome 116
chr3:126,474,726–126,477,195 179.1 kb Distal (>10kb) Multiome 733
chr3:126,523,848–126,524,758 130.8 kb Distal (>10kb) Multiome 575
chr3:126,654,554–126,655,321 2 bp At TSS Multiome 582
chr3:126,679,144–126,679,651 24.3 kb Distal (>10kb) Multiome 342
chr3:126,703,722–126,704,881 49.0 kb Distal (>10kb) Multiome 711
chr3:126,751,552–126,752,720 97.3 kb Distal (>10kb) Multiome 361
chr3:126,887,820–126,888,945 233.3 kb Distal (>10kb) Multiome 92
chr3:126,933,925–126,934,641 279.3 kb Distal (>10kb) Multiome 84
chr3:126,982,121–126,984,731 329.2 kb Distal (>10kb) Multiome HiCAR 876
chr3:127,455,528–127,456,092 800.6 kb Distal (>10kb) Multiome HiCAR 441
chr3:127,544,147–127,544,731 889.3 kb Distal (>10kb) Multiome HiCAR 252
chr3:127,547,261–127,548,296 892.8 kb Distal (>10kb) Multiome HiCAR 460

Genome Browser

Genomic view of the TXNRD3 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.

chr3:126,345,690 – 127,558,296
Proximal 1 kb Distal 10 kb Multiome HiCAR ATAC-seq RNA-seq