chr3 : 123,600,718 123,601,402
684 bp 74 TFs 4 linked genes
This 684 bp open chromatin element is linked to 4 target genes and is bound by 74 transcription factors.
Linked Genes
4 genes
Gene Expression Dist. to TSS Distance Link type
MYLK-AS1 15.8 kb Distal Multiome
HACD2 16.0 kb Distal Multiome
ADCY5 152.5 kb Distal Multiome
MYLK 283.3 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:123,595,718 – 123,606,402
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
74 transcription factors
Source
Cell type
ARID1B 2 datasets
ChIP K-562 ENCSR822CCM.ARID1B.K-562 504 bp overlap
ChIP K562 ENCFF938UXQ 137 bp overlap
Atf3 1 dataset
Motif DE_72h DE_72h-Atf3_MA1988.2 7 bp overlap
BACH1 1 dataset
Motif DE_72h DE_72h-BACH1_MA1633.2 9 bp overlap
BATF 1 dataset
Motif DE_72h DE_72h-BATF_MA1634.2 7 bp overlap
BATF3 1 dataset
Motif DE_72h DE_72h-BATF3_MA0835.3 7 bp overlap
BCL11A 5 datasets
ChIP CD34_Day5_30min GSE104676.BCL11A.CD34_Day5_30min 69 bp overlap
ChIP CD34_Day7_60min GSE104676.BCL11A.CD34_Day7_60min 74 bp overlap
ChIP CD34_Day7_90min GSE104676.BCL11A.CD34_Day7_90min 69 bp overlap
ChIP HUDEP-2_90min GSE104676.BCL11A.HUDEP-2_90min 85 bp overlap
ChIP HUDEP-2_90min GSE104676.BCL11A.HUDEP-2_90min 76 bp overlap
BHLHE22 3 datasets
Motif DE_60h DE_60h-BHLHE22_MA1635.2 6 bp overlap
Motif DE_72h DE_72h-BHLHE22_MA1635.2 6 bp overlap
Motif DE_72h DE_72h-BHLHE22_MA1635.2 6 bp overlap
BNC2 1 dataset
Motif DE_72h DE_72h-BNC2_MA1928.2 7 bp overlap
BRD4 1 dataset
ChIP keratinocyte GSE140992.BRD4.keratinocyte 544 bp overlap
CBFA2T2 2 datasets
ChIP K-562 ENCSR699PVC.CBFA2T2.K-562 246 bp overlap
ChIP K562 ENCFF963TXY 381 bp overlap
CBFA2T3 2 datasets
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 383 bp overlap
ChIP K562 ENCFF673OEZ 242 bp overlap
CEBPD 1 dataset
ChIP K-562 ENCSR000BVY.CEBPD.K-562 130 bp overlap
CREBBP 2 datasets
ChIP keratinocyte GSE140991.CREBBP.keratinocyte 432 bp overlap
ChIP keratinocyte_KLF3i GSE140991.CREBBP.keratinocyte_KLF3i 349 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF460KDD 328 bp overlap
ChIP BLaER1 ENCFF896HSY 219 bp overlap
DPF2 1 dataset
ChIP K562 ENCFF775HUO 577 bp overlap
DUX4 1 dataset
ChIP WA01 GSE94322.DUX4.WA01 250 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 188 bp overlap
EP300 2 datasets
ChIP HeLa-S3 ENCFF245KNK 361 bp overlap
ChIP HeLa-S3 ENCSR000ECV.EP300.HeLa-S3 147 bp overlap
ERF::NHLH1 2 datasets
Motif DE_60h DE_60h-ERFNHLH1_MA1938.2 16 bp overlap
Motif DE_72h DE_72h-ERFNHLH1_MA1938.2 16 bp overlap
FOXA2 4 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 283 bp overlap
ChIP BJ1-hTERT_MimoRelease GSE92491.FOXA2.BJ1-hTERT_MimoRelease 124 bp overlap
ChIP DE DE-FOXA2-1 405 bp overlap
ChIP DE DE-FOXA2-2 411 bp overlap
FOXL2 1 dataset
ChIP KGN_1513 GSE138496.FOXL2.KGN_1513 218 bp overlap
GATA1 13 datasets
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 102 bp overlap
ChIP CD34_ERYTH_BIO GSE29194.GATA1.CD34_ERYTH_BIO 231 bp overlap
ChIP CD34_ERYTH_BMP GSE29194.GATA1.CD34_ERYTH_BMP 389 bp overlap
ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 75 bp overlap
ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 97 bp overlap
ChIP K-562 GSE107726.GATA1.K-562 265 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 179 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 184 bp overlap
ChIP erythroblast ENCFF867JAR 504 bp overlap
ChIP erythroblast ENCFF867JAR 392 bp overlap
ChIP erythroblast ENCSR000EXP.GATA1.erythroblast 684 bp overlap
ChIP erythroid_Don001 GSE137982.GATA1.erythroid_Don001 251 bp overlap
ChIP erythroid_Don003 GSE137982.GATA1.erythroid_Don003 319 bp overlap
GATA1::TAL1 2 datasets
Motif DE_60h DE_60h-GATA1TAL1_MA0140.3 17 bp overlap
Motif DE_72h DE_72h-GATA1TAL1_MA0140.3 17 bp overlap
GATA2 1 dataset
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 138 bp overlap
GATA4 8 datasets
ChIP A-549 GSE85002.GATA4.A-549 253 bp overlap
ChIP DE DE-GATA4-1 684 bp overlap
ChIP DE DE-GATA4-2 684 bp overlap
ChIP ESO-26 GSE132813.GATA4.ESO-26 310 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 498 bp overlap
ChIP YCC-3 GSE51705.GATA4.YCC-3 345 bp overlap
ChIP foregut GSE117136.GATA4.foregut 451 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 284 bp overlap
GATA6 17 datasets
ChIP AGS GSE51705.GATA6.AGS 346 bp overlap
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 147 bp overlap
ChIP DE DE-GATA6-1 684 bp overlap
ChIP DE DE-GATA6-2 684 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 565 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 684 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 535 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 656 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 465 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 582 bp overlap
ChIP HUG1N GSE51936.GATA6.HUG1N 194 bp overlap
ChIP KATO-III GSE51705.GATA6.KATO-III 184 bp overlap
ChIP OACP4-C GSE132680.GATA6.OACP4-C 430 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 371 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 614 bp overlap
ChIP foregut GSE117136.GATA6.foregut 333 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 269 bp overlap
HMBOX1 2 datasets
ChIP K-562 ENCSR757IIU.HMBOX1.K-562 224 bp overlap
ChIP K562 ENCFF317JJX 521 bp overlap
HNF4A 2 datasets
ChIP IM95 GSE114018.HNF4A.IM95 220 bp overlap
ChIP KATO-III GSE114018.HNF4A.KATO-III 222 bp overlap
JUND 1 dataset
ChIP HCT116 ENCFF748ZQX 397 bp overlap
Jun 1 dataset
Motif DE_72h DE_72h-Jun_MA0489.3 8 bp overlap
KLF1 2 datasets
ChIP HEK293 ENCFF159QSW 276 bp overlap
ChIP HEK293 ENCSR859BMR.KLF1.HEK293 303 bp overlap
KLF17 1 dataset
ChIP HEK293 ENCSR065WUF.KLF17.HEK293 336 bp overlap
KLF3 1 dataset
ChIP keratinocyte GSE140991.KLF3.keratinocyte 414 bp overlap
KLF4 1 dataset
ChIP keratinocyte_diff GSE57702.KLF4.keratinocyte_diff 431 bp overlap
LDB1 1 dataset
ChIP HEP GSE52637.LDB1.HEP 166 bp overlap
LHX6 2 datasets
Motif DE_60h DE_60h-LHX6_MA0658.2 8 bp overlap
Motif DE_72h DE_72h-LHX6_MA0658.2 8 bp overlap
LMO2 1 dataset
ChIP CCRF-CEM GSE33850.LMO2.CCRF-CEM 70 bp overlap
MAFK 1 dataset
ChIP A549 ENCFF371EPR 294 bp overlap
MAX 2 datasets
ChIP HeLa-S3 ENCSR000EZF.MAX.HeLa-S3 127 bp overlap
ChIP HeLa-S3 ENCSR000EZF.MAX.HeLa-S3 162 bp overlap
NFE2 1 dataset
ChIP ProEs GSE59087.NFE2.ProEs 104 bp overlap
NFIA 1 dataset
Motif DE_72h DE_72h-NFIA_MA0670.2 6 bp overlap
NFIX 1 dataset
Motif DE_72h DE_72h-NFIX_MA0671.2 6 bp overlap
NRF1 1 dataset
ChIP HeLa-S3 GSE108856.NRF1.HeLa-S3 269 bp overlap
Neurod2 3 datasets
Motif DE_60h DE_60h-Neurod2_MA1993.2 6 bp overlap
Motif DE_72h DE_72h-Neurod2_MA1993.2 6 bp overlap
Motif DE_72h DE_72h-Neurod2_MA1993.2 6 bp overlap
ONECUT2 1 dataset
ChIP PC-3_normoxia GSE106305.ONECUT2.PC-3_normoxia 173 bp overlap
Olig2 3 datasets
Motif DE_60h DE_60h-Olig2_MA1997.2 6 bp overlap
Motif DE_72h DE_72h-Olig2_MA1997.2 6 bp overlap
Motif DE_72h DE_72h-Olig2_MA1997.2 6 bp overlap
PHIP 1 dataset
ChIP HCT-116_MLL1-KO__ab833 GSE101646.PHIP.HCT-116_MLL1-KO__ab833 126 bp overlap
POLR2A 4 datasets
ChIP SK-N-SH ENCFF683PFH 112 bp overlap
ChIP erythroblast ENCFF498VMR 616 bp overlap
ChIP stomach ENCFF607ZPU 325 bp overlap
ChIP stomach ENCFF820WZN 136 bp overlap
POU3F1 1 dataset
Motif DE_72h DE_72h-POU3F1_MA0786.2 10 bp overlap
POU3F2 1 dataset
Motif DE_72h DE_72h-POU3F2_MA0787.1 12 bp overlap
POU3F4 1 dataset
Motif DE_72h DE_72h-POU3F4_MA0789.1 9 bp overlap
POU5F1 1 dataset
ChIP BJ_INDUCED GSE36570.POU5F1.BJ_INDUCED 262 bp overlap
SMAD1 1 dataset
ChIP CD34_ERYTH_BMP GSE29194.SMAD1.CD34_ERYTH_BMP 120 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 613 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 274 bp overlap
SMAD3 1 dataset
ChIP HCC1954_TGFb GSE104760.SMAD3.HCC1954_TGFb 209 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 475 bp overlap
SP1 1 dataset
ChIP HCT116 ENCFF800LBN 437 bp overlap
TAL1 8 datasets
ChIP CD34 GSE52924.TAL1.CD34 149 bp overlap
ChIP HSPC-CD34pos GSE93372.TAL1.HSPC-CD34pos 113 bp overlap
ChIP K-562 ENCSR000EHB.TAL1.K-562 114 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.TAL1.K-562_enCRISPRi-KL 186 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 207 bp overlap
ChIP ProEs GSE59087.TAL1.ProEs 199 bp overlap
ChIP erythroid GSE42390.TAL1.erythroid 171 bp overlap
ChIP erythroid GSE42390.TAL1.erythroid 136 bp overlap
TCF12 2 datasets
ChIP Hep-G2 ENCSR000BJG.TCF12.Hep-G2 114 bp overlap
ChIP K562 ENCFF931DJY 391 bp overlap
TCF3 1 dataset
ChIP K-562 ENCSR970OJY.TCF3.K-562 148 bp overlap
TCF7L2 1 dataset
ChIP LNCaP GSE51621.TCF7L2.LNCaP 279 bp overlap
TFAP4 3 datasets
Motif DE_60h DE_60h-TFAP4_MA0691.1 10 bp overlap
Motif DE_72h DE_72h-TFAP4_MA0691.1 10 bp overlap
Motif DE_72h DE_72h-TFAP4_MA0691.1 10 bp overlap
TFAP4::FLI1 2 datasets
Motif DE_60h DE_60h-TFAP4FLI1_MA1967.2 14 bp overlap
Motif DE_72h DE_72h-TFAP4FLI1_MA1967.2 14 bp overlap
TP63 3 datasets
ChIP keratinocyte_D2 GSE59824.TP63.keratinocyte_D2 166 bp overlap
ChIP keratinocyte_D4 GSE59824.TP63.keratinocyte_D4 96 bp overlap
ChIP keratinocyte_D7 GSE59824.TP63.keratinocyte_D7 81 bp overlap
Tcf12 3 datasets
Motif DE_60h DE_60h-Tcf12_MA0521.3 6 bp overlap
Motif DE_72h DE_72h-Tcf12_MA0521.3 6 bp overlap
Motif DE_72h DE_72h-Tcf12_MA0521.3 6 bp overlap
Twist2 3 datasets
Motif DE_60h DE_60h-Twist2_MA0633.3 6 bp overlap
Motif DE_72h DE_72h-Twist2_MA0633.3 6 bp overlap
Motif DE_72h DE_72h-Twist2_MA0633.3 6 bp overlap
ZBTB7A 1 dataset
ChIP HUDEP-2 GSE103445.ZBTB7A.HUDEP-2 308 bp overlap
ZNF410 2 datasets
Motif DE_60h DE_60h-ZNF410_MA0752.2 16 bp overlap
Motif DE_72h DE_72h-ZNF410_MA0752.2 16 bp overlap
ZNF449 2 datasets
Motif DE_60h DE_60h-ZNF449_MA1656.2 10 bp overlap
Motif DE_72h DE_72h-ZNF449_MA1656.2 10 bp overlap