chr3 : 112,446,327 112,446,704
377 bp 49 TFs 0 linked genes
This 377 bp open chromatin element has no linked target genes and is bound by 49 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:112,441,327 – 112,451,704
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
49 transcription factors
Source
Cell type
ATRX 1 dataset
ChIP metastatic-neuroblastoma_CHLA90 GSE100148.ATRX.metastatic-neuroblastoma_CHLA90 160 bp overlap
BAP1 1 dataset
ChIP NCI-H1963_shNONT GSE145028.BAP1.NCI-H1963_shNONT 308 bp overlap
BNC2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR754GYI.BNC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 125 bp overlap
BRD4 10 datasets
ChIP CLL_patient1 GSE109411.BRD4.CLL_patient1 318 bp overlap
ChIP CLL_patient3 GSE109411.BRD4.CLL_patient3 377 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 176 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 377 bp overlap
ChIP NCI-H2171_DMSO GSE49224.BRD4.NCI-H2171_DMSO 231 bp overlap
ChIP SGBS_TNF GSE64233.BRD4.SGBS_TNF 169 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 377 bp overlap
ChIP SK-N-BE2-C_Resistant-veh GSE107706.BRD4.SK-N-BE2-C_Resistant-veh 147 bp overlap
ChIP SK-N-BE2-C_Resistant-veh GSE107706.BRD4.SK-N-BE2-C_Resistant-veh 164 bp overlap
ChIP SUM159PT_100nMtrametinib_24h GSE87418.BRD4.SUM159PT_100nMtrametinib_24h 377 bp overlap
CEBPA 4 datasets
ChIP Kasumi-1_CEBPA-ER GSE102697.CEBPA.Kasumi-1_CEBPA-ER 195 bp overlap
ChIP Kasumi-1_CEBPA-ER_E2 GSE102697.CEBPA.Kasumi-1_CEBPA-ER_E2 204 bp overlap
ChIP SKH1_RUNX1-EVI1_KD GSE87283.CEBPA.SKH1_RUNX1-EVI1_KD 131 bp overlap
ChIP THP-1_1-25D_24h GSE124032.CEBPA.THP-1_1-25D_24h 141 bp overlap
CEBPB 3 datasets
ChIP HL-60 GSE107553.CEBPB.HL-60 180 bp overlap
ChIP HL-60_CEBPB_overexpressed GSE100486.CEBPB.HL-60_CEBPB_overexpressed 145 bp overlap
ChIP HeLa-S3 ENCFF722WEG 225 bp overlap
CSDC2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR474KBG.CSDC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 366 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF093OYK 299 bp overlap
ChIP BLaER1 ENCFF798NMV 164 bp overlap
EBF1 4 datasets
ChIP ASC GSE54889.EBF1.ASC 203 bp overlap
ChIP GM12878 ENCFF167CZS 276 bp overlap
ChIP MUTUL GSE75503.EBF1.MUTUL 286 bp overlap
ChIP NALM-6 GSE126300.EBF1.NALM-6 328 bp overlap
ESR1 1 dataset
ChIP Ishikawa ENCSR000BQR.ESR1.Ishikawa 109 bp overlap
FLI1 2 datasets
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 238 bp overlap
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 194 bp overlap
GATA2 2 datasets
ChIP primary-endometrial-stromal-cell_IVD_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P2 272 bp overlap
ChIP primary-endometrial-stromal-cell_Veh_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_Veh_P2 284 bp overlap
GATA3 3 datasets
ChIP BE2C GSE65664.GATA3.BE2C 343 bp overlap
ChIP Kelly GSE94822.GATA3.Kelly 319 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 344 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 327 bp overlap
ChIP DE DE-GATA4-2 377 bp overlap
GATA6 7 datasets
ChIP DE DE-GATA6-1 243 bp overlap
ChIP DE DE-GATA6-2 377 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 237 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 291 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 297 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 248 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 221 bp overlap
HAND2 2 datasets
ChIP Kelly GSE94822.HAND2.Kelly 164 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 377 bp overlap
HSF1 1 dataset
ChIP NCI-H838 GSE38901.HSF1.NCI-H838 227 bp overlap
ISL1 2 datasets
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 377 bp overlap
ChIP SK-N-SH ENCFF285GEQ 342 bp overlap
LHX2 1 dataset
ChIP retina_pigment GSE60024.LHX2.retina_pigment 368 bp overlap
LMO2 1 dataset
ChIP CCRF-CEM GSE33850.LMO2.CCRF-CEM 197 bp overlap
MAX 1 dataset
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 169 bp overlap
MED1 8 datasets
ChIP NCI-H2171 GSE36354.MED1.NCI-H2171 337 bp overlap
ChIP SGBS GSE64233.MED1.SGBS 377 bp overlap
ChIP SGBS_TNF GSE64233.MED1.SGBS_TNF 300 bp overlap
ChIP hMSC-TERT4_4h GSE104537.MED1.hMSC-TERT4_4h 309 bp overlap
ChIP hMSC-TERT4_adipocyte-4H GSE113253.MED1.hMSC-TERT4_adipocyte-4H 296 bp overlap
ChIP hMSC-TERT4_osteoblast-D1 GSE113253.MED1.hMSC-TERT4_osteoblast-D1 209 bp overlap
ChIP hMSC-TERT4_osteoblast-D3 GSE113253.MED1.hMSC-TERT4_osteoblast-D3 180 bp overlap
ChIP hMSC-TERT4_undifferentiated GSE113253.MED1.hMSC-TERT4_undifferentiated 117 bp overlap
MRTFB 1 dataset
ChIP A-673-clone-Asp114 GSE92738.MRTFB.A-673-clone-Asp114 214 bp overlap
MYC 2 datasets
ChIP NCI-H128 GSE41105.MYC.NCI-H128 139 bp overlap
ChIP NCI-H128 GSE41105.MYC.NCI-H128 178 bp overlap
MYCN 3 datasets
ChIP Kelly GSE94822.MYCN.Kelly 82 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 257 bp overlap
ChIP SK-N-BE2-C GSE94822.MYCN.SK-N-BE2-C 278 bp overlap
NR1H3 1 dataset
ChIP SGBS GSE41629.NR1H3.SGBS 360 bp overlap
NRIP1 1 dataset
ChIP MCF-7_E2 ERP005838.NRIP1.MCF-7_E2 127 bp overlap
PAX5 2 datasets
ChIP GM12878 ENCSR000BHD.PAX5.GM12878 145 bp overlap
ChIP GM12878 ENCSR000BHJ.PAX5.GM12878 166 bp overlap
PHOX2B 1 dataset
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 377 bp overlap
RAD21 1 dataset
ChIP HAP1 GSE152721.RAD21.HAP1 277 bp overlap
RELA 2 datasets
ChIP SGBS GSE64233.RELA.SGBS 264 bp overlap
ChIP SGBS_TNF GSE64233.RELA.SGBS_TNF 309 bp overlap
SKI 1 dataset
ChIP HL-60 GSE107553.SKI.HL-60 104 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 304 bp overlap
SMARCA4 2 datasets
ChIP NGP GSE134626.SMARCA4.NGP 179 bp overlap
ChIP NGP_ARID1A-het GSE134626.SMARCA4.NGP_ARID1A-het 265 bp overlap
SNAI2 2 datasets
ChIP SK-N-SH ENCFF449PID 337 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR106GVM.SNAI2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 348 bp overlap
SOX2 1 dataset
ChIP RENVM GSE49404.SOX2.RENVM 176 bp overlap
STAT3 4 datasets
ChIP HCC1187 GSE152203.STAT3.HCC1187 363 bp overlap
ChIP MCF-10A ENCSR000DOZ.STAT3.MCF-10A 147 bp overlap
ChIP MCF10A-Er-Src_EtOH GSE115597.STAT3.MCF10A-Er-Src_EtOH 164 bp overlap
ChIP MDA-MB-157_EtOH GSE85579.STAT3.MDA-MB-157_EtOH 164 bp overlap
TBX2 1 dataset
ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 76 bp overlap
TCF12 1 dataset
ChIP SK-N-SH ENCFF147AHB 137 bp overlap
TCF21 1 dataset
ChIP HCASMC GSE124011.TCF21.HCASMC 176 bp overlap
TCF4 1 dataset
ChIP SK-N-SH ENCFF270OWF 198 bp overlap
TEAD4 2 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 377 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 377 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 160 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 240 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 240 bp overlap
ZFP3 3 datasets
ChIP SK-N-SH ENCFF981MBE 367 bp overlap
ChIP SK-N-SH ENCFF981MBE 252 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR581GUY.ZFP3.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 377 bp overlap
ZIM3 2 datasets
ChIP HEK293 GSE76494.ZIM3.HEK293 142 bp overlap
ChIP HEK293T GSE78099.ZIM3.HEK293T 107 bp overlap