chr3 : 63,594,941 63,595,549
608 bp 102 TFs 2 linked genes
This 608 bp open chromatin element is linked to ATXN7 and THOC7 and is bound by 102 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
ATXN7 268.6 kb Distal Multiome
THOC7 268.6 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:63,589,941 – 63,600,549
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
102 transcription factors
Source
Cell type
AHR 2 datasets
ChIP MCF-7_DMSO_1d GSE90550.AHR.MCF-7_DMSO_1d 139 bp overlap
ChIP MCF-7_DMSO_45min GSE90550.AHR.MCF-7_DMSO_45min 212 bp overlap
Arid3a 1 dataset
Motif DE_36h DE_36h-Arid3a_MA0151.1 6 bp overlap
CEBPD 1 dataset
Motif DE_36h DE_36h-CEBPD_MA0836.3 8 bp overlap
CRX 3 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 342 bp overlap
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 272 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 328 bp overlap
E2F1 1 dataset
ChIP MCF-7 ENCSR000EWX.E2F1.MCF-7 284 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 494 bp overlap
ESR1 6 datasets
ChIP MCF-7 GSE68356.ESR1.MCF-7 205 bp overlap
ChIP MCF-7_E2_talen GSE94493.ESR1.MCF-7_E2_talen 377 bp overlap
ChIP MCF-7_RUNX2_DOX GSE86538.ESR1.MCF-7_RUNX2_DOX 191 bp overlap
ChIP MCF-7_ethanol_MKL1D200 GSE107476.ESR1.MCF-7_ethanol_MKL1D200 379 bp overlap
ChIP MCF-7_shFbxo_E2_SRC-3 GSE119702.ESR1.MCF-7_shFbxo_E2_SRC-3 244 bp overlap
ChIP MCF-7_shFbxo_SRC-3 GSE119702.ESR1.MCF-7_shFbxo_SRC-3 244 bp overlap
ETV6 1 dataset
ChIP GM12878 ENCSR597VGC.ETV6.GM12878 553 bp overlap
FLI1 1 dataset
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 234 bp overlap
FOXA1 1 dataset
ChIP VCaP_ETOH24H GSE58428.FOXA1.VCaP_ETOH24H 289 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 604 bp overlap
ChIP DE DE-FOXA2-2 608 bp overlap
FOXD2 4 datasets
Motif DE_36h DE_36h-FOXD2_MA0847.4 11 bp overlap
Motif DE_36h DE_36h-FOXD2_MA0847.4 11 bp overlap
Motif DE_36h DE_36h-FOXD2_MA0847.4 11 bp overlap
Motif DE_48h DE_48h-FOXD2_MA0847.4 11 bp overlap
FOXD3 1 dataset
Motif DE_36h DE_36h-FOXD3_MA0041.3 14 bp overlap
FOXE1 2 datasets
Motif DE_36h DE_36h-FOXE1_MA1487.3 12 bp overlap
Motif DE_48h DE_48h-FOXE1_MA1487.3 12 bp overlap
GATA2 1 dataset
Motif DE_36h DE_36h-GATA2_MA0036.4 7 bp overlap
GATA3 3 datasets
ChIP MCF-7 ENCFF178GBS 116 bp overlap
ChIP MCF-7 ENCFF178GBS 319 bp overlap
ChIP MCF-7_E2 GSE60270.GATA3.MCF-7_E2 228 bp overlap
GATA4 6 datasets
ChIP DE DE-GATA4-1 607 bp overlap
ChIP DE DE-GATA4-2 608 bp overlap
Motif DE_36h DE_36h-GATA4_MA0482.3 8 bp overlap
ChIP foregut GSE117136.GATA4.foregut 608 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 608 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 242 bp overlap
GATA6 12 datasets
ChIP DE DE-GATA6-1 458 bp overlap
ChIP DE DE-GATA6-2 585 bp overlap
Motif DE_36h DE_36h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 481 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 269 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 416 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 524 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 334 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 540 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 543 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 331 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 238 bp overlap
GLIS3 3 datasets
Motif DE_36h DE_36h-GLIS3_MA0737.1 14 bp overlap
Motif DE_48h DE_48h-GLIS3_MA0737.1 14 bp overlap
Motif DE_72h DE_72h-GLIS3_MA0737.1 14 bp overlap
GRHL2 3 datasets
Motif DE_36h DE_36h-GRHL2_MA1105.3 8 bp overlap
Motif DE_48h DE_48h-GRHL2_MA1105.3 8 bp overlap
ChIP MCF-7_E2_45min GSE109820.GRHL2.MCF-7_E2_45min 235 bp overlap
Gata3 1 dataset
Motif DE_36h DE_36h-Gata3_MA0037.5 8 bp overlap
HNF1A 1 dataset
Motif DE_36h DE_36h-HNF1A_MA0046.3 13 bp overlap
HOXA10 1 dataset
Motif DE_36h DE_36h-HOXA10_MA0899.2 9 bp overlap
HOXA3 1 dataset
Motif DE_36h DE_36h-HOXA3_MA2119.1 7 bp overlap
HOXA4 1 dataset
Motif DE_36h DE_36h-HOXA4_MA1496.2 7 bp overlap
HOXB4 1 dataset
Motif DE_36h DE_36h-HOXB4_MA1499.2 6 bp overlap
HOXB9 1 dataset
Motif DE_36h DE_36h-HOXB9_MA1503.2 9 bp overlap
HOXC10 1 dataset
Motif DE_36h DE_36h-HOXC10_MA0905.2 9 bp overlap
HOXC4 1 dataset
Motif DE_36h DE_36h-HOXC4_MA1504.2 6 bp overlap
HOXC9 1 dataset
Motif DE_36h DE_36h-HOXC9_MA0485.3 9 bp overlap
HOXD10 1 dataset
Motif DE_36h DE_36h-HOXD10_MA1506.2 10 bp overlap
HOXD11 1 dataset
Motif DE_36h DE_36h-HOXD11_MA0908.2 9 bp overlap
HOXD4 1 dataset
Motif DE_36h DE_36h-HOXD4_MA1507.2 6 bp overlap
HOXD9 1 dataset
Motif DE_36h DE_36h-HOXD9_MA0913.3 9 bp overlap
Hoxa11 1 dataset
Motif DE_36h DE_36h-Hoxa11_MA0911.2 9 bp overlap
IKZF1 2 datasets
Motif DE_36h DE_36h-IKZF1_MA1508.2 8 bp overlap
Motif DE_48h DE_48h-IKZF1_MA1508.2 8 bp overlap
ISL2 1 dataset
Motif DE_36h DE_36h-ISL2_MA0914.2 6 bp overlap
KDM1A 2 datasets
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 302 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 296 bp overlap
LIN54 2 datasets
Motif DE_36h DE_36h-LIN54_MA0619.2 7 bp overlap
Motif DE_48h DE_48h-LIN54_MA0619.2 7 bp overlap
MED1 1 dataset
ChIP MCF-7_SHRARS GSE60270.MED1.MCF-7_SHRARS 168 bp overlap
MEIS1 1 dataset
Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap
Mecom 1 dataset
Motif DE_36h DE_36h-Mecom_MA0029.2 11 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 464 bp overlap
NCOA1 2 datasets
ChIP MCF-7 ERP000901.NCOA1.MCF-7 175 bp overlap
ChIP MCF-7_E2 ERP000901.NCOA1.MCF-7_E2 124 bp overlap
NCOA2 2 datasets
ChIP MCF-7 ERP000901.NCOA2.MCF-7 249 bp overlap
ChIP MCF-7_E2 ERP000901.NCOA2.MCF-7_E2 213 bp overlap
NCOA3 1 dataset
ChIP MCF-7_E2 ERP000901.NCOA3.MCF-7_E2 305 bp overlap
NEUROD1 5 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 281 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 224 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 287 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 300 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 298 bp overlap
NFATC3 1 dataset
Motif DE_36h DE_36h-NFATC3_MA0625.3 6 bp overlap
NFIA 2 datasets
Motif DE_36h DE_36h-NFIA_MA0670.2 6 bp overlap
Motif DE_48h DE_48h-NFIA_MA0670.2 6 bp overlap
NFIX 3 datasets
Motif DE_36h DE_36h-NFIX_MA0671.2 6 bp overlap
Motif DE_36h DE_36h-NFIX_MA1528.2 14 bp overlap
Motif DE_48h DE_48h-NFIX_MA0671.2 6 bp overlap
NKX2-3 1 dataset
Motif DE_36h DE_36h-NKX2-3_MA0672.2 8 bp overlap
NKX2-4 1 dataset
Motif DE_36h DE_36h-NKX2-4_MA2003.2 8 bp overlap
NKX2-8 1 dataset
Motif DE_36h DE_36h-NKX2-8_MA0673.2 8 bp overlap
NKX6-1 1 dataset
Motif DE_36h DE_36h-NKX6-1_MA0674.2 7 bp overlap
NKX6-3 1 dataset
Motif DE_36h DE_36h-NKX6-3_MA1530.2 8 bp overlap
NRIP1 3 datasets
ChIP MCF-7 ERP005838.NRIP1.MCF-7 280 bp overlap
ChIP MCF-7 ERP005838.NRIP1.MCF-7 225 bp overlap
ChIP MCF-7_E2 ERP005838.NRIP1.MCF-7_E2 127 bp overlap
NRL 1 dataset
ChIP retina_Hu13 GSE137311.NRL.retina_Hu13 268 bp overlap
Nfat5 1 dataset
Motif DE_36h DE_36h-Nfat5_MA0606.3 8 bp overlap
Nfatc1 1 dataset
Motif DE_36h DE_36h-Nfatc1_MA0624.3 6 bp overlap
Nkx3-2 1 dataset
Motif DE_36h DE_36h-Nkx3-2_MA0122.4 10 bp overlap
Nr2F6 1 dataset
Motif DE_48h DE_48h-Nr2F6_MA0728.1 15 bp overlap
OTX2 2 datasets
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 372 bp overlap
ChIP retina_pigment GSE60024.OTX2.retina_pigment 152 bp overlap
POU1F1 1 dataset
Motif DE_36h DE_36h-POU1F1_MA0784.3 14 bp overlap
POU2F1::SOX2 2 datasets
Motif DE_36h DE_36h-POU2F1SOX2_MA1962.1 17 bp overlap
Motif DE_36h DE_36h-POU2F1SOX2_MA1962.1 17 bp overlap
POU2F2 1 dataset
Motif DE_36h DE_36h-POU2F2_MA0507.3 13 bp overlap
POU2F3 1 dataset
Motif DE_36h DE_36h-POU2F3_MA0627.3 9 bp overlap
POU3F2 1 dataset
Motif DE_36h DE_36h-POU3F2_MA0787.1 12 bp overlap
POU3F3 1 dataset
Motif DE_36h DE_36h-POU3F3_MA0788.1 13 bp overlap
POU5F1 1 dataset
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 288 bp overlap
Pou5f1::Sox2 4 datasets
Motif DE_36h DE_36h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif DE_36h DE_36h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif DE_36h DE_36h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif DE_48h DE_48h-Pou5f1Sox2_MA0142.1 15 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 275 bp overlap
Rarb 1 dataset
Motif DE_48h DE_48h-Rarb_MA0857.1 16 bp overlap
Rarg 1 dataset
Motif DE_48h DE_48h-Rarg_MA0859.2 15 bp overlap
SATB1 1 dataset
Motif DE_36h DE_36h-SATB1_MA1963.2 7 bp overlap
SMAD2-3 3 datasets
ChIP HGrC1_EV GSE138496.SMAD2-3.HGrC1_EV 161 bp overlap
ChIP HGrC1_WT GSE138496.SMAD2-3.HGrC1_WT 120 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 406 bp overlap
SMARCB1 2 datasets
ChIP MCF-7_4-hydroxytamoxifen GSE123284.SMARCB1.MCF-7_4-hydroxytamoxifen 212 bp overlap
ChIP MCF-7_DCDT GSE123284.SMARCB1.MCF-7_DCDT 295 bp overlap
SMC1A 1 dataset
ChIP MCF-7 GSE115602.SMC1A.MCF-7 163 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 428 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 539 bp overlap
STAT3 2 datasets
ChIP MCF-7_jc5836 GSE126004.STAT3.MCF-7_jc5836 244 bp overlap
ChIP MCF-7_jc5843 GSE126004.STAT3.MCF-7_jc5843 284 bp overlap
Sox1 2 datasets
Motif DE_36h DE_36h-Sox1_MA0870.1 15 bp overlap
Motif DE_48h DE_48h-Sox1_MA0870.1 15 bp overlap
Stat5a 1 dataset
Motif DE_36h DE_36h-Stat5a_MA1624.2 9 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 191 bp overlap
TRIM28 1 dataset
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 138 bp overlap
TRPS1 1 dataset
Motif DE_36h DE_36h-TRPS1_MA1970.2 8 bp overlap
Yy1 2 datasets
Motif DE_36h DE_36h-Yy1_MA0095.4 8 bp overlap
Motif DE_48h DE_48h-Yy1_MA0095.4 8 bp overlap
ZBTB11 2 datasets
ChIP K562 ENCFF694AXU 317 bp overlap
ChIP K562 ENCFF694AXU 162 bp overlap
ZBTB17 2 datasets
Motif DE_36h DE_36h-ZBTB17_MA2102.1 8 bp overlap
Motif DE_48h DE_48h-ZBTB17_MA2102.1 8 bp overlap
ZFP42 2 datasets
Motif DE_36h DE_36h-ZFP42_MA1651.2 13 bp overlap
Motif DE_48h DE_48h-ZFP42_MA1651.2 13 bp overlap
ZFX 2 datasets
ChIP MCF-7 ENCFF009NAJ 380 bp overlap
ChIP MCF-7 ENCSR435OQD.ZFX.MCF-7 542 bp overlap
ZNF136 1 dataset
Motif DE_36h DE_36h-ZNF136_MA1588.1 15 bp overlap
ZNF143 1 dataset
ChIP MCF-7 GSE76454.ZNF143.MCF-7 279 bp overlap
ZNF574 1 dataset
Motif DE_36h DE_36h-ZNF574_MA1982.2 14 bp overlap
ZNF667 1 dataset
Motif DE_48h DE_48h-ZNF667_MA1984.2 11 bp overlap
ZNF76 2 datasets
Motif DE_36h DE_36h-ZNF76_MA1716.2 17 bp overlap
Motif DE_48h DE_48h-ZNF76_MA1716.2 17 bp overlap
Zfx 3 datasets
Motif DE_36h DE_36h-Zfx_MA0146.3 10 bp overlap
Motif DE_48h DE_48h-Zfx_MA0146.3 10 bp overlap
Motif DE_72h DE_72h-Zfx_MA0146.3 10 bp overlap
Zic1::Zic2 2 datasets
Motif DE_36h DE_36h-Zic1Zic2_MA1628.2 7 bp overlap
Motif DE_48h DE_48h-Zic1Zic2_MA1628.2 7 bp overlap
Zic2 2 datasets
Motif DE_36h DE_36h-Zic2_MA1629.2 9 bp overlap
Motif DE_48h DE_48h-Zic2_MA1629.2 9 bp overlap
Zic3 2 datasets
Motif DE_36h DE_36h-Zic3_MA0697.3 7 bp overlap
Motif DE_48h DE_48h-Zic3_MA0697.3 7 bp overlap