chr3 : 47,890,619 47,890,991
372 bp 59 TFs 0 linked genes
This 372 bp open chromatin element has no linked target genes and is bound by 59 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:47,885,619 – 47,895,991
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
59 transcription factors
Source
Cell type
AR 13 datasets
ChIP breast_tumor_Male_10 GSE104399.AR.breast_tumor_Male_10 91 bp overlap
ChIP breast_tumor_Male_28 GSE104399.AR.breast_tumor_Male_28 123 bp overlap
ChIP prostate GSE56288.AR.prostate 192 bp overlap
ChIP prostate_1730_T GSE130408.AR.prostate_1730_T 135 bp overlap
ChIP prostate_1798_T GSE130408.AR.prostate_1798_T 104 bp overlap
ChIP prostate_1816_T GSE130408.AR.prostate_1816_T 178 bp overlap
ChIP prostate_2752_T GSE130408.AR.prostate_2752_T 144 bp overlap
ChIP prostate_4024_T GSE130408.AR.prostate_4024_T 205 bp overlap
ChIP prostate_P1 GSE130408.AR.prostate_P1 97 bp overlap
ChIP prostate_P25 GSE130408.AR.prostate_P25 163 bp overlap
ChIP prostate_P27 GSE130408.AR.prostate_P27 93 bp overlap
ChIP prostate_P27_T GSE130408.AR.prostate_P27_T 120 bp overlap
ChIP prostate_P7 GSE130408.AR.prostate_P7 134 bp overlap
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 359 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 263 bp overlap
BRD4 5 datasets
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_KCl-pos_JQ1-neg 372 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 372 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 372 bp overlap
ChIP retina_AB1-FW20 GSE86981.BRD4.retina_AB1-FW20 324 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 65 bp overlap
CDK8 6 datasets
ChIP leiomyoma_PT886 GSE128230.CDK8.leiomyoma_PT886 93 bp overlap
ChIP leiomyoma_PT967 GSE128230.CDK8.leiomyoma_PT967 66 bp overlap
ChIP myometrium_PT1063 GSE128230.CDK8.myometrium_PT1063 75 bp overlap
ChIP myometrium_PT848 GSE128230.CDK8.myometrium_PT848 51 bp overlap
ChIP myometrium_PT886 GSE128230.CDK8.myometrium_PT886 119 bp overlap
ChIP myometrium_PT916 GSE128230.CDK8.myometrium_PT916 121 bp overlap
CEBPA 2 datasets
ChIP THP-1_1-25D_8h GSE124032.CEBPA.THP-1_1-25D_8h 86 bp overlap
ChIP THP-1_EtOH_24h GSE124032.CEBPA.THP-1_EtOH_24h 54 bp overlap
CEBPB 4 datasets
ChIP HFOB_DIFF GSE82295.CEBPB.HFOB_DIFF 87 bp overlap
ChIP IMR-90 ENCFF468UGY 54 bp overlap
ChIP K562 ENCFF194QGF 90 bp overlap
ChIP K562 ENCFF584CTB 162 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 353 bp overlap
CREBBP 1 dataset
ChIP retina_Hu33 GSE137311.CREBBP.retina_Hu33 213 bp overlap
CRX 3 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 189 bp overlap
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 261 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 270 bp overlap
CTCF 8 datasets
ChIP gastroesophageal sphincter ENCFF125ESZ 195 bp overlap
ChIP gastroesophageal-sphincter ENCSR298ZPF.CTCF.gastroesophageal-sphincter 194 bp overlap
ChIP gastroesophageal-sphincter ENCSR146BGM.CTCF.gastroesophageal-sphincter 123 bp overlap
ChIP heart_left-ventricle ENCSR718SDR.CTCF.heart_left-ventricle 153 bp overlap
ChIP retina_Hu22 GSE137311.CTCF.retina_Hu22 226 bp overlap
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 186 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 294 bp overlap
ChIP uterus ENCSR527TPP.CTCF.uterus 112 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 225 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF335XTP 137 bp overlap
EP300 5 datasets
ChIP neural ENCSR843ZUP.EP300.neural 372 bp overlap
ChIP neural cell ENCFF442QNK 104 bp overlap
ChIP sigmoid colon ENCFF953ZIP 87 bp overlap
ChIP stomach ENCFF818VAB 229 bp overlap
ChIP tibial nerve ENCFF346AYA 312 bp overlap
ESR1 13 datasets
ChIP MCF-7_ARID1A-KO_4-OHT GSE123284.ESR1.MCF-7_ARID1A-KO_4-OHT 85 bp overlap
ChIP breast-cancer_3840 GSE126004.ESR1.breast-cancer_3840 64 bp overlap
ChIP breast_tumor_BADOUTCOME GSE40867.ESR1.breast_tumor_BADOUTCOME 184 bp overlap
ChIP breast_tumor_Male_10 GSE104399.ESR1.breast_tumor_Male_10 371 bp overlap
ChIP breast_tumor_Male_11 GSE104399.ESR1.breast_tumor_Male_11 218 bp overlap
ChIP breast_tumor_Male_19 GSE104399.ESR1.breast_tumor_Male_19 235 bp overlap
ChIP breast_tumor_Male_28 GSE104399.ESR1.breast_tumor_Male_28 93 bp overlap
ChIP endometrioid-adenocarcinoma_tumor_1 GSE94031.ESR1.endometrioid-adenocarcinoma_tumor_1 78 bp overlap
ChIP endometrioid-adenocarcinoma_tumor_2 GSE94031.ESR1.endometrioid-adenocarcinoma_tumor_2 246 bp overlap
ChIP endometrioid-adenocarcinoma_tumor_6 GSE94031.ESR1.endometrioid-adenocarcinoma_tumor_6 86 bp overlap
ChIP endometrioid-adenocarcinoma_tumor_F GSE94031.ESR1.endometrioid-adenocarcinoma_tumor_F 170 bp overlap
ChIP primary-endometrium-cancer_E1_DSG GSE114737.ESR1.primary-endometrium-cancer_E1_DSG 132 bp overlap
ChIP primary-endometrium-cancer_E2_DSG GSE114737.ESR1.primary-endometrium-cancer_E2_DSG 57 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 163 bp overlap
FOS 2 datasets
ChIP myometrium_PT1063 GSE128230.FOS.myometrium_PT1063 58 bp overlap
ChIP myometrium_PT916 GSE128230.FOS.myometrium_PT916 117 bp overlap
FOXA1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 129 bp overlap
GATA2 1 dataset
ChIP primary-endometrial-stromal-cell_IVD_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P2 79 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-2 372 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 179 bp overlap
GATA6 3 datasets
ChIP DE DE-GATA6-2 372 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 344 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 68 bp overlap
GLYR1 1 dataset
ChIP HeLa GSE20303.GLYR1.HeLa 283 bp overlap
INTS13 1 dataset
ChIP monocyte GSE106359.INTS13.monocyte 122 bp overlap
JUN 1 dataset
ChIP myometrium_PT1063 GSE128230.JUN.myometrium_PT1063 67 bp overlap
MED1 1 dataset
ChIP HUVEC-C_siERG GSE124892.MED1.HUVEC-C_siERG 204 bp overlap
MED12 7 datasets
ChIP leiomyoma_PT848 GSE128230.MED12.leiomyoma_PT848 61 bp overlap
ChIP leiomyoma_PT886 GSE128230.MED12.leiomyoma_PT886 81 bp overlap
ChIP myometrium_PT1063 GSE128230.MED12.myometrium_PT1063 92 bp overlap
ChIP myometrium_PT848 GSE128230.MED12.myometrium_PT848 69 bp overlap
ChIP myometrium_PT886 GSE128230.MED12.myometrium_PT886 122 bp overlap
ChIP myometrium_PT916 GSE128230.MED12.myometrium_PT916 161 bp overlap
ChIP myometrium_PT967 GSE128230.MED12.myometrium_PT967 58 bp overlap
MEF2D 4 datasets
ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 61 bp overlap
ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 222 bp overlap
ChIP retina_Hu21 GSE137311.MEF2D.retina_Hu21 365 bp overlap
ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 372 bp overlap
MXI1 1 dataset
ChIP neural cell ENCFF623HQN 249 bp overlap
NEUROD1 4 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 185 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 104 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 177 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 169 bp overlap
NEUROG2 2 datasets
ChIP MRC-5_NFD_02DPT GSE75910.NEUROG2.MRC-5_NFD_02DPT 68 bp overlap
ChIP MRC-5_NFD_1DPT GSE75910.NEUROG2.MRC-5_NFD_1DPT 196 bp overlap
NR2F2 3 datasets
ChIP liver ENCFF565JGD 372 bp overlap
ChIP liver ENCSR168SMX.NR2F2.liver 335 bp overlap
ChIP liver ENCSR338MMB.NR2F2.liver 136 bp overlap
NR3C1 1 dataset
ChIP breast_tumor_Male_15 GSE104399.NR3C1.breast_tumor_Male_15 185 bp overlap
NRF1 1 dataset
ChIP HeLa-S3 GSE108856.NRF1.HeLa-S3 351 bp overlap
ONECUT1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 178 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 353 bp overlap
PAF1 1 dataset
ChIP HCT-116_ab20662 GSE97527.PAF1.HCT-116_ab20662 169 bp overlap
PDX1 3 datasets
ChIP hiPSC GSE125768.PDX1.hiPSC 177 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 132 bp overlap
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 202 bp overlap
PGR 2 datasets
ChIP myometrium_NP1 GSE137550.PGR.myometrium_NP1 301 bp overlap
ChIP myometrium_NP2 GSE137550.PGR.myometrium_NP2 360 bp overlap
POLR2A 18 datasets
ChIP breast epithelium ENCFF045XXN 279 bp overlap
ChIP esophagus muscularis mucosa ENCFF432ZCY 221 bp overlap
ChIP esophagus muscularis mucosa ENCFF759BBR 98 bp overlap
ChIP esophagus muscularis mucosa ENCFF791ZXN 308 bp overlap
ChIP gastroesophageal sphincter ENCFF070PCA 63 bp overlap
ChIP neural cell ENCFF604SPB 132 bp overlap
ChIP prostate gland ENCFF881OMH 60 bp overlap
ChIP sigmoid colon ENCFF101ILL 173 bp overlap
ChIP sigmoid colon ENCFF725QFT 214 bp overlap
ChIP sigmoid colon ENCFF748YVT 213 bp overlap
ChIP stomach ENCFF278MYS 134 bp overlap
ChIP stomach ENCFF820WZN 300 bp overlap
ChIP suprapubic skin ENCFF083NEJ 188 bp overlap
ChIP transverse colon ENCFF607LKE 197 bp overlap
ChIP transverse colon ENCFF610RWV 214 bp overlap
ChIP transverse colon ENCFF840PXT 177 bp overlap
ChIP upper lobe of left lung ENCFF199JUI 209 bp overlap
ChIP vagina ENCFF305NWS 110 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 191 bp overlap
RAD21 5 datasets
ChIP HAP1 GSE126634.RAD21.HAP1 251 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 208 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 372 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 148 bp overlap
ChIP neural ENCSR198ZYJ.RAD21.neural 190 bp overlap
RARA 2 datasets
ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 195 bp overlap
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 229 bp overlap
RBM39 1 dataset
ChIP K-562 ENCSR764OXF.RBM39.K-562 149 bp overlap
REST 2 datasets
ChIP neural ENCSR000BTV.REST.neural 372 bp overlap
ChIP neural cell ENCFF882LXX 221 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 372 bp overlap
RXR 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.RXR.pancreatic-progenitor_PP1 157 bp overlap
RXRA 1 dataset
ChIP liver ENCFF807CIA 218 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 212 bp overlap
SIN3A 4 datasets
ChIP H1 ENCFF042ZSL 363 bp overlap
ChIP H1 ENCFF896IJG 220 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 186 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 133 bp overlap
SMARCA4 2 datasets
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 369 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 372 bp overlap
SMC3 1 dataset
ChIP neural ENCSR404BPV.SMC3.neural 67 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_T48 GSE137168.SNAI2.SMS-CTR_T48 199 bp overlap
SOX2 3 datasets
ChIP HNSC GSE69479.SOX2.HNSC 372 bp overlap
ChIP hiPSC GSE67282.SOX2.hiPSC 75 bp overlap
ChIP hiPSC_INHI GSE67282.SOX2.hiPSC_INHI 177 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 132 bp overlap
SUPT5H 1 dataset
ChIP HeLa GSE125534.SUPT5H.HeLa 202 bp overlap
TAF1 3 datasets
ChIP WA01 ENCSR000BHO.TAF1.WA01 78 bp overlap
ChIP neural ENCSR000BTX.TAF1.neural 372 bp overlap
ChIP neural cell ENCFF468SPD 357 bp overlap
TP63 1 dataset
ChIP foreskin GSE126390.TP63.foreskin 172 bp overlap
YY1 1 dataset
ChIP Huh-7 GSE97411.YY1.Huh-7 243 bp overlap
ZNF143 2 datasets
ChIP FLP76_T4 GSE39263.ZNF143.FLP76_T4 147 bp overlap
ChIP HeLa GSE39263.ZNF143.HeLa 127 bp overlap