chr3 : 39,752,851 39,753,192
341 bp 65 TFs 0 linked genes
This 341 bp open chromatin element has no linked target genes and is bound by 65 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:39,747,851 – 39,758,192
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
65 transcription factors
Source
Cell type
ATRX 2 datasets
ChIP metastatic-neuroblastoma_SKNFI GSE100148.ATRX.metastatic-neuroblastoma_SKNFI 274 bp overlap
ChIP metastatic-neuroblastoma_SKNMM GSE100148.ATRX.metastatic-neuroblastoma_SKNMM 341 bp overlap
BNC2 2 datasets
ChIP SK-N-SH ENCFF174EMC 240 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR754GYI.BNC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 127 bp overlap
BRD4 6 datasets
ChIP GM15850_DMSO GSE99402.BRD4.GM15850_DMSO 341 bp overlap
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 217 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.BRD4.Kelly_resistant_JQ1 180 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 341 bp overlap
ChIP SEM GSE83671.BRD4.SEM 179 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 221 bp overlap
CREBBP 1 dataset
ChIP tonsil_GCBc_p4 GSE89688.CREBBP.tonsil_GCBc_p4 162 bp overlap
CSDC2 2 datasets
ChIP SK-N-SH ENCFF868MXA 312 bp overlap
ChIP SK-N-SH ENCFF868MXA 165 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF274GAT 111 bp overlap
EBF1 2 datasets
ChIP LCL GSE75503.EBF1.LCL 67 bp overlap
ChIP NALM-6 GSE126300.EBF1.NALM-6 341 bp overlap
EHF 1 dataset
ChIP RWPE-1 GSE114241.EHF.RWPE-1 164 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 135 bp overlap
EP300 2 datasets
ChIP 697 GSE138031.EP300.697 164 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 156 bp overlap
ERG 5 datasets
ChIP HAEC GSE89970.ERG.HAEC 150 bp overlap
ChIP HUVEC-C GSE128382.ERG.HUVEC-C 176 bp overlap
ChIP RWPE-1 GSE114241.ERG.RWPE-1 231 bp overlap
ChIP TSU-1621MT_ATRA GSE60477.ERG.TSU-1621MT_ATRA 140 bp overlap
ChIP aortic-endothelial-cell_D16 GSE139377.ERG.aortic-endothelial-cell_D16 156 bp overlap
ETS1 1 dataset
ChIP HUVEC-C_VEGF_4H GSE41166.ETS1.HUVEC-C_VEGF_4H 174 bp overlap
FLI1 3 datasets
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 184 bp overlap
ChIP A-673_D11 GSE129155.FLI1.A-673_D11 176 bp overlap
ChIP HUVEC-C GSE109695.FLI1.HUVEC-C 142 bp overlap
FOS 2 datasets
ChIP endothelial cell of umbilical vein ENCFF415XBG 280 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EVU.FOS.endothelial_umbilical-vein 256 bp overlap
FOXA1 2 datasets
ChIP NCI-H3122 GSE39998.FOXA1.NCI-H3122 226 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 202 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 341 bp overlap
ChIP DE DE-FOXA2-2 341 bp overlap
GATA2 3 datasets
ChIP TF1 GSE73207.GATA2.TF1 250 bp overlap
ChIP endothelial cell of umbilical vein ENCFF148NLK 304 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EVW.GATA2.endothelial_umbilical-vein 320 bp overlap
GATA3 2 datasets
ChIP Kelly GSE65664.GATA3.Kelly 258 bp overlap
ChIP Kelly GSE94822.GATA3.Kelly 217 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 341 bp overlap
ChIP DE DE-GATA4-2 320 bp overlap
ChIP foregut GSE117136.GATA4.foregut 257 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 288 bp overlap
GATA6 7 datasets
ChIP AGS GSE51705.GATA6.AGS 133 bp overlap
ChIP DE DE-GATA6-1 316 bp overlap
ChIP DE DE-GATA6-2 341 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 267 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 249 bp overlap
ChIP foregut GSE117136.GATA6.foregut 269 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 211 bp overlap
HAND2 3 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 278 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 128 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 341 bp overlap
HDAC2 1 dataset
ChIP pre-B-cell GSE107886.HDAC2.pre-B-cell 174 bp overlap
HMGB2 1 dataset
ChIP HUVEC-C GSE98245.HMGB2.HUVEC-C 145 bp overlap
IKZF1 1 dataset
ChIP BCR-ABL1_LAX2 GSE58825.IKZF1.BCR-ABL1_LAX2 181 bp overlap
IKZF3 1 dataset
ChIP pre-B-cell GSE107886.IKZF3.pre-B-cell 280 bp overlap
ISL1 2 datasets
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 311 bp overlap
ChIP SK-N-SH ENCFF285GEQ 292 bp overlap
JUN 5 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 261 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 287 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 317 bp overlap
ChIP HAEC_IL1b_4h GSE89970.JUN.HAEC_IL1b_4h 133 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 287 bp overlap
JUNB 1 dataset
ChIP HAEC GSE89970.JUNB.HAEC 211 bp overlap
JUND 1 dataset
ChIP SK-N-SH ENCSR000BSK.JUND.SK-N-SH 129 bp overlap
KDM1A 3 datasets
ChIP SH-SY5Y_B0 GSE58258.KDM1A.SH-SY5Y_B0 191 bp overlap
ChIP SH-SY5Y_B0_SHLSD18A GSE58258.KDM1A.SH-SY5Y_B0_SHLSD18A 97 bp overlap
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 197 bp overlap
KMT2A 1 dataset
ChIP L826 GSE83671.KMT2A.L826 155 bp overlap
MED 1 dataset
ChIP SEM GSE83671.MED.SEM 120 bp overlap
MEIS1 1 dataset
ChIP SEM GSE38339.MEIS1.SEM 124 bp overlap
MTA2 1 dataset
ChIP pre-B-cell GSE107886.MTA2.pre-B-cell 182 bp overlap
MYB 2 datasets
ChIP Loucy GSE94000.MYB.Loucy 232 bp overlap
ChIP SEM GSE117864.MYB.SEM 279 bp overlap
MYC 1 dataset
ChIP endothelial_umbilical-vein ENCSR000DLU.MYC.endothelial_umbilical-vein 94 bp overlap
MYCN 3 datasets
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 341 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 320 bp overlap
ChIP SK-N-BE2-C GSE94822.MYCN.SK-N-BE2-C 148 bp overlap
NKX2-1 1 dataset
ChIP NCI-H3122 GSE39998.NKX2-1.NCI-H3122 272 bp overlap
NR3C1 2 datasets
ChIP NALM-6 GSE67046.NR3C1.NALM-6 119 bp overlap
ChIP SUP-B15_DEX GSE107584.NR3C1.SUP-B15_DEX 212 bp overlap
ONECUT2 1 dataset
ChIP PC-3_normoxia GSE106305.ONECUT2.PC-3_normoxia 215 bp overlap
PAX5 1 dataset
ChIP NALM-6 GSE126300.PAX5.NALM-6 341 bp overlap
PBX1 1 dataset
ChIP RCH-ACV GSE85988.PBX1.RCH-ACV 341 bp overlap
PHOX2B 2 datasets
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 341 bp overlap
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 259 bp overlap
POLR2A 1 dataset
ChIP endothelial cell of umbilical vein ENCFF303XUJ 340 bp overlap
RCOR1 1 dataset
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 159 bp overlap
RELA 16 datasets
ChIP aortic-endothelial-cell_IL1B_D10 GSE139377.RELA.aortic-endothelial-cell_IL1B_D10 183 bp overlap
ChIP aortic-endothelial-cell_IL1B_D14 GSE139377.RELA.aortic-endothelial-cell_IL1B_D14 141 bp overlap
ChIP aortic-endothelial-cell_IL1B_D16 GSE139377.RELA.aortic-endothelial-cell_IL1B_D16 221 bp overlap
ChIP aortic-endothelial-cell_IL1B_D21 GSE139377.RELA.aortic-endothelial-cell_IL1B_D21 185 bp overlap
ChIP aortic-endothelial-cell_IL1B_D22 GSE139377.RELA.aortic-endothelial-cell_IL1B_D22 172 bp overlap
ChIP aortic-endothelial-cell_IL1B_D26 GSE139377.RELA.aortic-endothelial-cell_IL1B_D26 174 bp overlap
ChIP aortic-endothelial-cell_IL1B_D27 GSE139377.RELA.aortic-endothelial-cell_IL1B_D27 234 bp overlap
ChIP aortic-endothelial-cell_IL1B_D28 GSE139377.RELA.aortic-endothelial-cell_IL1B_D28 176 bp overlap
ChIP aortic-endothelial-cell_IL1B_D38 GSE139377.RELA.aortic-endothelial-cell_IL1B_D38 187 bp overlap
ChIP aortic-endothelial-cell_IL1B_D39 GSE139377.RELA.aortic-endothelial-cell_IL1B_D39 146 bp overlap
ChIP aortic-endothelial-cell_IL1B_D4 GSE139377.RELA.aortic-endothelial-cell_IL1B_D4 160 bp overlap
ChIP aortic-endothelial-cell_IL1B_D40 GSE139377.RELA.aortic-endothelial-cell_IL1B_D40 209 bp overlap
ChIP aortic-endothelial-cell_IL1B_D45 GSE139377.RELA.aortic-endothelial-cell_IL1B_D45 151 bp overlap
ChIP aortic-endothelial-cell_IL1B_D47 GSE139377.RELA.aortic-endothelial-cell_IL1B_D47 161 bp overlap
ChIP aortic-endothelial-cell_IL1B_D6 GSE139377.RELA.aortic-endothelial-cell_IL1B_D6 131 bp overlap
ChIP aortic-endothelial-cell_IL1B_D9 GSE139377.RELA.aortic-endothelial-cell_IL1B_D9 177 bp overlap
REST 1 dataset
ChIP PFSK1 ENCSR000BOX.REST.PFSK1 125 bp overlap
RUNX1 2 datasets
ChIP 697 GSE138031.RUNX1.697 312 bp overlap
ChIP NALM-6 GSE126300.RUNX1.NALM-6 228 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 293 bp overlap
SMARCA4 4 datasets
ChIP A-549_AG15723 GSE132290.SMARCA4.A-549_AG15723 63 bp overlap
ChIP A-549_AG15724 GSE132290.SMARCA4.A-549_AG15724 93 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 132 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 199 bp overlap
SMC1 1 dataset
ChIP HCAEC GSE101921.SMC1.HCAEC 255 bp overlap
SNAI2 1 dataset
ChIP SK-N-SH ENCFF449PID 243 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 261 bp overlap
SPDEF 1 dataset
ChIP A-549 GSE86957.SPDEF.A-549 253 bp overlap
TBX2 2 datasets
ChIP Kelly GSE94822.TBX2.Kelly 200 bp overlap
ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 143 bp overlap
TCF3 1 dataset
ChIP RCH-ACV GSE85988.TCF3.RCH-ACV 341 bp overlap
TEAD4 2 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 253 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 253 bp overlap
TFEB 1 dataset
ChIP HUVEC-C GSE88894.TFEB.HUVEC-C 162 bp overlap
TP63 1 dataset
ChIP SUIT-2 GSE115461.TP63.SUIT-2 187 bp overlap
ZFP3 2 datasets
ChIP SK-N-SH ENCFF981MBE 341 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR581GUY.ZFP3.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 328 bp overlap