chr3 : 25,088,353 – 25,088,648

295 bp 88 TFs 0 linked genes

This 295 bp open chromatin element has no linked target genes and is bound by 88 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

88 transcription factors

ARID1A 1 dataset

ChIP HAP1 GSE108387.ARID1A.HAP1 295 bp overlap

BRD3 1 dataset

ChIP H-1_DE GSE126661.BRD3.H-1_DE 272 bp overlap

CEBPD 1 dataset

Motif DE_12h DE_12h-CEBPD_MA0836.3 8 bp overlap

CTBP1 2 datasets

ChIP HEK293T ENCFF003PDY 281 bp overlap

ChIP HEK293T ENCSR237TFX.CTBP1.HEK293T 295 bp overlap

CXXC4 1 dataset

ChIP HEK293T GSE42958.CXXC4.HEK293T 184 bp overlap

ESR1 6 datasets

ChIP Ishikawa_C1-12 GSE147141.ESR1.Ishikawa_C1-12 213 bp overlap

ChIP Ishikawa_C2-3 GSE147141.ESR1.Ishikawa_C2-3 278 bp overlap

ChIP Ishikawa_E2_D538G GSE132426.ESR1.Ishikawa_E2_D538G 277 bp overlap

ChIP Ishikawa_ETV4-KO1_Mili GSE129803.ESR1.Ishikawa_ETV4-KO1_Mili 196 bp overlap

ChIP endometrioid-adenocarcinoma_tumor_2 GSE94031.ESR1.endometrioid-adenocarcinoma_tumor_2 196 bp overlap

ChIP primary-endometrium-cancer_E1_DSG GSE114737.ESR1.primary-endometrium-cancer_E1_DSG 295 bp overlap

FEZF1 3 datasets

ChIP HEK293 ENCFF528YED 295 bp overlap

ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 295 bp overlap

ChIP HEK293 GSE76494.FEZF1.HEK293 229 bp overlap

FOSL2 2 datasets

ChIP NPC_K755R-pos GSE122631.FOSL2.NPC_K755R-pos 191 bp overlap

ChIP NPC_R1159Q GSE122631.FOSL2.NPC_R1159Q 295 bp overlap

FOXA1 1 dataset

ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 177 bp overlap

FOXA2 2 datasets

ChIP DE DE-FOXA2-1 182 bp overlap

ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 157 bp overlap

FOXC1 1 dataset

Motif DE_12h DE_12h-FOXC1_MA0032.2 11 bp overlap

FOXC2 1 dataset

Motif DE_12h DE_12h-FOXC2_MA0846.2 11 bp overlap

FOXD2 1 dataset

Motif DE_12h DE_12h-FOXD2_MA0847.4 11 bp overlap

FOXD3 1 dataset

Motif DE_12h DE_12h-FOXD3_MA0041.3 14 bp overlap

FOXE1 1 dataset

Motif DE_12h DE_12h-FOXE1_MA1487.3 12 bp overlap

FOXN3 1 dataset

Motif DE_12h DE_12h-FOXN3_MA1489.1 8 bp overlap

FOXO1-PAX3 1 dataset

ChIP RH4_Entinostat-6H GSE116344.FOXO1-PAX3.RH4_Entinostat-6H 184 bp overlap

FOXP2 1 dataset

Motif DE_12h DE_12h-FOXP2_MA0593.2 9 bp overlap

Foxl2 1 dataset

Motif DE_12h DE_12h-Foxl2_MA1607.2 10 bp overlap

GATA4 1 dataset

ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 128 bp overlap

GATA6 2 datasets

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 160 bp overlap

ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 286 bp overlap

IKZF3 2 datasets

ChIP HEK293 ENCFF518OXG 136 bp overlap

ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 214 bp overlap

IRF2BP2 1 dataset

ChIP HEK293 GSE124636.IRF2BP2.HEK293 204 bp overlap

IRF3 1 dataset

Motif DE_12h DE_12h-IRF3_MA1418.2 17 bp overlap

IRF7 1 dataset

Motif DE_12h DE_12h-IRF7_MA0772.2 13 bp overlap

IRF9 1 dataset

Motif DE_12h DE_12h-IRF9_MA0653.1 15 bp overlap

KLF10 2 datasets

ChIP HEK293 ENCFF326EGX 295 bp overlap

ChIP HEK293 ENCSR006GAQ.KLF10.HEK293 274 bp overlap

KLF4 1 dataset

ChIP HAP1 GSE130417.KLF4.HAP1 284 bp overlap

KLF5 4 datasets

ChIP HEK293 GSE88976.KLF5.HEK293 266 bp overlap

ChIP HEK293_D418N GSE88976.KLF5.HEK293_D418N 278 bp overlap

ChIP HEK293_E419K GSE88976.KLF5.HEK293_E419K 254 bp overlap

ChIP HEK293_E419Q GSE88976.KLF5.HEK293_E419Q 294 bp overlap

MAZ 2 datasets

ChIP HEK293 ENCFF994GSG 295 bp overlap

ChIP HEK293 ENCSR290SSQ.MAZ.HEK293 274 bp overlap

MYCN 2 datasets

ChIP SHEP-21N GSE80151.MYCN.SHEP-21N 231 bp overlap

ChIP SHEP-21N_24h GSE80151.MYCN.SHEP-21N_24h 231 bp overlap

MZF1 1 dataset

ChIP HEK293 ENCSR298QUH.MZF1.HEK293 295 bp overlap

NANOG 1 dataset

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 194 bp overlap

NR4A1 1 dataset

Motif DE_12h DE_12h-NR4A1_MA1112.3 8 bp overlap

Nr2e1 1 dataset

Motif DE_12h DE_12h-Nr2e1_MA0676.1 9 bp overlap

OSR2 2 datasets

ChIP HEK293 ENCFF875BDB 288 bp overlap

ChIP HEK293 ENCSR324LTM.OSR2.HEK293 295 bp overlap

OVOL3 1 dataset

ChIP HEK293 ENCSR768LIO.OVOL3.HEK293 216 bp overlap

PDX1 5 datasets

ChIP H9 ERP004206.PDX1.H9 295 bp overlap

ChIP hESC GSE58685.PDX1.hESC 230 bp overlap

ChIP hiPSC GSE125768.PDX1.hiPSC 295 bp overlap

ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 295 bp overlap

ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 295 bp overlap

PHIP 1 dataset

ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 101 bp overlap

PKNOX1 2 datasets

ChIP HEK293T ENCFF174WDB 295 bp overlap

ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 295 bp overlap

PRDM4 1 dataset

ChIP HEK293 ENCSR443MVV.PRDM4.HEK293 279 bp overlap

PRDM6 2 datasets

ChIP HEK293 ENCFF283AJL 295 bp overlap

ChIP HEK293 GSE76494.PRDM6.HEK293 295 bp overlap

RAD21 2 datasets

ChIP HAP1 GSE126634.RAD21.HAP1 295 bp overlap

ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 227 bp overlap

RARA 2 datasets

ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 295 bp overlap

ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 295 bp overlap

RBPJ 1 dataset

ChIP GSC8-11_dasatinib GSE74557.RBPJ.GSC8-11_dasatinib 224 bp overlap

RNF2 2 datasets

ChIP SYO-1_shCt GSE139053.RNF2.SYO-1_shCt 295 bp overlap

ChIP fibroblast GSE139053.RNF2.fibroblast 292 bp overlap

SMAD2-3 2 datasets

ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 52 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 163 bp overlap

SMAD2_3 1 dataset

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 87 bp overlap

SMARCA2 6 datasets

ChIP NPC_AM GSE122631.SMARCA2.NPC_AM 145 bp overlap

ChIP NPC_K755R-pos GSE122631.SMARCA2.NPC_K755R-pos 295 bp overlap

ChIP NPC_K755R-pos_ab GSE122631.SMARCA2.NPC_K755R-pos_ab 233 bp overlap

ChIP NPC_K755R-siAP GSE122631.SMARCA2.NPC_K755R-siAP 295 bp overlap

ChIP NPC_K755R-siCT GSE122631.SMARCA2.NPC_K755R-siCT 295 bp overlap

ChIP NPC_R1159Q GSE122631.SMARCA2.NPC_R1159Q 229 bp overlap

SMARCA4 5 datasets

ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 295 bp overlap

ChIP NPC_K755R-siCT GSE122631.SMARCA4.NPC_K755R-siCT 285 bp overlap

ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 295 bp overlap

ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 295 bp overlap

ChIP NSC GSE125033.SMARCA4.NSC 239 bp overlap

SMARCC1 2 datasets

ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 295 bp overlap

ChIP hiPSC GSE124903.SMARCC1.hiPSC 187 bp overlap

SOX2 4 datasets

ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 198 bp overlap

ChIP NCI-H520 GSE137459.SOX2.NCI-H520 295 bp overlap

ChIP NPC GSE122631.SOX2.NPC 295 bp overlap

ChIP RENVM GSE49404.SOX2.RENVM 171 bp overlap

SOX3 1 dataset

ChIP NPC GSE122631.SOX3.NPC 295 bp overlap

SP5_Zebrafish 2 datasets

ChIP HEK293_Zebrafish_dDBD GSE121316.SP5_Zebrafish.HEK293_Zebrafish_dDBD 268 bp overlap

ChIP HEK293_dDBD GSE110277.SP5_Zebrafish.HEK293_dDBD 184 bp overlap

SP7 2 datasets

ChIP HEK293 ENCFF733RBE 273 bp overlap

ChIP HEK293 ENCSR468IJT.SP7.HEK293 295 bp overlap

SREBF2 1 dataset

Motif DE_12h DE_12h-SREBF2_MA0596.1 10 bp overlap

SS18 1 dataset

ChIP Aska-SS GSE108025.SS18.Aska-SS 295 bp overlap

STAT1::STAT2 1 dataset

Motif DE_12h DE_12h-STAT1STAT2_MA0517.2 13 bp overlap

STAT3 1 dataset

ChIP MDA-MB-157_EtOH GSE85579.STAT3.MDA-MB-157_EtOH 215 bp overlap

Sox6 1 dataset

Motif DE_12h DE_12h-Sox6_MA0515.1 10 bp overlap

TCF7L2 2 datasets

ChIP HEK293 ENCFF513JQN 295 bp overlap

ChIP HEK293 ENCSR000EUY.TCF7L2.HEK293 295 bp overlap

TWIST1 4 datasets

ChIP SHEP-21N GSE80151.TWIST1.SHEP-21N 295 bp overlap

ChIP SHEP-21N GSE80151.TWIST1.SHEP-21N 234 bp overlap

ChIP SHEP-21N_24h GSE80151.TWIST1.SHEP-21N_24h 243 bp overlap

ChIP SHEP-21N_DOX_0H GSE80151.TWIST1.SHEP-21N_DOX_0H 295 bp overlap

WT1 2 datasets

ChIP HEK293 ENCFF906HIR 295 bp overlap

ChIP HEK293 ENCSR966PJJ.WT1.HEK293 295 bp overlap

YY1 3 datasets

ChIP Hep-G2_NC GSE120104.YY1.Hep-G2_NC 295 bp overlap

ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 295 bp overlap

ChIP WA01 ENCSR000BKD.YY1.WA01 123 bp overlap

ZBTB12 1 dataset

ChIP HEK293 ENCSR543KOA.ZBTB12.HEK293 269 bp overlap

ZBTB20 1 dataset

ChIP HEK293 ENCSR460MBI.ZBTB20.HEK293 210 bp overlap

ZBTB44 1 dataset

ChIP HEK293 ENCSR076STQ.ZBTB44.HEK293 295 bp overlap

ZBTB7C 1 dataset

Motif DE_12h DE_12h-ZBTB7C_MA0695.2 8 bp overlap

ZBTB8A 1 dataset

ChIP HEK293 ENCSR481FEC.ZBTB8A.HEK293 295 bp overlap

ZEB2 2 datasets

ChIP HEK293 ENCFF847JIE 295 bp overlap

ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 295 bp overlap

ZFP57 1 dataset

ChIP hESC GSE115387.ZFP57.hESC 288 bp overlap

ZIC2 1 dataset

ChIP HEK293 ENCFF033NQQ 120 bp overlap

ZNF133 1 dataset

ChIP HEK293 ENCSR283MWQ.ZNF133.HEK293 177 bp overlap

ZNF18 1 dataset

ChIP HEK293 ENCSR977HTH.ZNF18.HEK293 225 bp overlap

ZNF213 1 dataset

ChIP HEK293 ENCSR295GRB.ZNF213.HEK293 295 bp overlap

ZNF317 1 dataset

ChIP HEK293 GSE76494.ZNF317.HEK293 150 bp overlap

ZNF320 2 datasets

ChIP HEK293 GSE76494.ZNF320.HEK293 184 bp overlap

ChIP HEK293T GSE78099.ZNF320.HEK293T 161 bp overlap

ZNF34 2 datasets

ChIP HEK293 ENCFF481TFV 211 bp overlap

ChIP HEK293 ENCSR727PIC.ZNF34.HEK293 181 bp overlap

ZNF35 1 dataset

ChIP HEK293 GSE76494.ZNF35.HEK293 295 bp overlap

ZNF467 1 dataset

ChIP HEK293 GSE76494.ZNF467.HEK293 192 bp overlap

ZNF513 2 datasets

ChIP HEK293 ENCFF457TCC 271 bp overlap

ChIP HEK293 ENCSR503DPC.ZNF513.HEK293 255 bp overlap

ZNF558 1 dataset

Motif DE_12h DE_12h-ZNF558_MA2335.1 29 bp overlap

ZNF561 2 datasets

ChIP HEK293 ENCFF399XKF 295 bp overlap

ChIP HEK293 ENCSR125ULS.ZNF561.HEK293 295 bp overlap

ZNF580 1 dataset

ChIP HEK293 ENCSR668HOP.ZNF580.HEK293 295 bp overlap

ZNF596 1 dataset

ChIP HEK293 ENCSR344SBD.ZNF596.HEK293 245 bp overlap

ZNF629 2 datasets

ChIP HEK293 ENCFF096ELQ 295 bp overlap

ChIP HEK293 ENCSR351NON.ZNF629.HEK293 295 bp overlap

ZNF843 2 datasets

ChIP HEK293 ENCFF241QRH 295 bp overlap

ChIP HEK293 ENCSR502KPJ.ZNF843.HEK293 295 bp overlap

ZSCAN5C 1 dataset

ChIP HEK293 ENCSR731AGO.ZSCAN5C.HEK293 182 bp overlap