chr3 : 24,579,045 – 24,579,558

513 bp 70 TFs 0 linked genes

This 513 bp open chromatin element has no linked target genes and is bound by 70 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

70 transcription factors

ASH2L 2 datasets

ChIP H1 ENCFF399KAM 376 bp overlap

ChIP WA01 ENCSR850KIP.ASH2L.WA01 513 bp overlap

BRD2 2 datasets

ChIP K-562 GSE140325.BRD2.K-562 358 bp overlap

ChIP K-562_DMSO GSE138084.BRD2.K-562_DMSO 272 bp overlap

BRD3 3 datasets

ChIP K-562_DMSO GSE138084.BRD3.K-562_DMSO 374 bp overlap

ChIP K-562_DMSO-IFNG GSE138084.BRD3.K-562_DMSO-IFNG 342 bp overlap

ChIP K-562_iBET-BD2-IFNG GSE138084.BRD3.K-562_iBET-BD2-IFNG 328 bp overlap

BRD4 8 datasets

ChIP HCC1806_100nMtrametinib_24h GSE87418.BRD4.HCC1806_100nMtrametinib_24h 175 bp overlap

ChIP HEK293_Ctrl GSE129407.BRD4.HEK293_Ctrl 278 bp overlap

ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 450 bp overlap

ChIP K-562_DMSO GSE138084.BRD4.K-562_DMSO 403 bp overlap

ChIP K-562_DMSO-IFNG GSE138084.BRD4.K-562_DMSO-IFNG 335 bp overlap

ChIP K-562_dilution-6-100 GSE140325.BRD4.K-562_dilution-6-100 80 bp overlap

ChIP K-562_iBET-BD1-IFNG GSE138084.BRD4.K-562_iBET-BD1-IFNG 303 bp overlap

ChIP K-562_iBET-BD2-IFNG GSE138084.BRD4.K-562_iBET-BD2-IFNG 336 bp overlap

CHD2 1 dataset

ChIP WA01 ENCSR000EBT.CHD2.WA01 153 bp overlap

CREBBP 1 dataset

ChIP MCF-7 ERP000901.CREBBP.MCF-7 265 bp overlap

CTCF 1 dataset

ChIP erythroid GSE67783.CTCF.erythroid 191 bp overlap

Dux 1 dataset

Motif DE_12h DE_12h-Dux_MA0611.3 11 bp overlap

E2F6 1 dataset

Motif DE_12h DE_12h-E2F6_MA0471.3 8 bp overlap

EED 1 dataset

ChIP ProEs GSE59087.EED.ProEs 167 bp overlap

EHMT2 1 dataset

ChIP K-562 ENCSR175EOM.EHMT2.K-562 157 bp overlap

ESR1 2 datasets

ChIP Ishikawa_E2-1h GSE129803.ESR1.Ishikawa_E2-1h 333 bp overlap

ChIP MCF-7_RUNX2_DOX GSE86538.ESR1.MCF-7_RUNX2_DOX 401 bp overlap

ETV5::FOXO1 1 dataset

Motif DE_12h DE_12h-ETV5FOXO1_MA1947.2 10 bp overlap

EZH2 1 dataset

ChIP THP-1 GSE135024.EZH2.THP-1 310 bp overlap

FERD3L 1 dataset

Motif DE_12h DE_12h-FERD3L_MA1485.1 14 bp overlap

GATA2 3 datasets

ChIP K-562 ENCSR000EWG.GATA2.K-562 116 bp overlap

ChIP SKH1 GSE87283.GATA2.SKH1 63 bp overlap

ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 264 bp overlap

GRHL2 4 datasets

ChIP HBE GSE46194.GRHL2.HBE 261 bp overlap

ChIP MCF-7 GSE109820.GRHL2.MCF-7 254 bp overlap

ChIP MCF-7_E2_45min GSE109820.GRHL2.MCF-7_E2_45min 267 bp overlap

ChIP T-47D GSE99680.GRHL2.T-47D 236 bp overlap

HAND2 1 dataset

Motif DE_12h DE_12h-HAND2_MA1638.2 6 bp overlap

ID3 1 dataset

ChIP K-562 ENCSR005NMT.ID3.K-562 513 bp overlap

Isl1 1 dataset

Motif DE_12h DE_12h-Isl1_MA1608.2 7 bp overlap

JARID2 1 dataset

ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 249 bp overlap

MED26 1 dataset

ChIP HEK293T GSE121024.MED26.HEK293T 179 bp overlap

MYC 1 dataset

ChIP CD34 GSE85488.MYC.CD34 113 bp overlap

Mecom 1 dataset

Motif DE_12h DE_12h-Mecom_MA0029.2 11 bp overlap

NBN 1 dataset

ChIP K-562 ENCSR085QEV.NBN.K-562 188 bp overlap

NEUROD1 1 dataset

Motif DE_12h DE_12h-NEUROD1_MA1109.2 8 bp overlap

NEUROG2 1 dataset

Motif DE_12h DE_12h-NEUROG2_MA1642.2 7 bp overlap

NFRKB 1 dataset

ChIP K-562 ENCSR657EOF.NFRKB.K-562 354 bp overlap

NUTM1 1 dataset

ChIP NUT_DMSO GSE133122.NUTM1.NUT_DMSO 513 bp overlap

Neurod2 1 dataset

Motif DE_12h DE_12h-Neurod2_MA0668.3 8 bp overlap

PAX3-FOXO1 1 dataset

ChIP RH4 GSE140115.PAX3-FOXO1.RH4 289 bp overlap

PLAG1 1 dataset

ChIP K-562 GSE111469.PLAG1.K-562 259 bp overlap

Prdm15 1 dataset

Motif DE_12h DE_12h-Prdm15_MA1616.2 11 bp overlap

Ptf1A 1 dataset

Motif DE_12h DE_12h-Ptf1A_MA1618.2 9 bp overlap

RBBP5 3 datasets

ChIP H1 ENCFF905HFL 501 bp overlap

ChIP WA01 ENCSR000AQC.RBBP5.WA01 385 bp overlap

ChIP WA01 ENCSR000AQC.RBBP5.WA01 64 bp overlap

RREB1 1 dataset

Motif DE_12h DE_12h-RREB1_MA0073.2 19 bp overlap

SMARCA4 2 datasets

ChIP K-562 ENCSR643VTW.SMARCA4.K-562 266 bp overlap

ChIP NGP_ARID1A-het GSE134626.SMARCA4.NGP_ARID1A-het 247 bp overlap

SMARCB1 1 dataset

ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 199 bp overlap

SMARCC1 1 dataset

ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 185 bp overlap

SMARCE1 2 datasets

ChIP K-562 ENCSR157TCS.SMARCE1.K-562 400 bp overlap

ChIP K562 ENCFF690CFF 453 bp overlap

SOX10 1 dataset

Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap

SOX4 1 dataset

Motif DE_12h DE_12h-SOX4_MA0867.3 8 bp overlap

SPI1 3 datasets

ChIP K-562 ENCSR000BGW.SPI1.K-562 175 bp overlap

ChIP K-562_NABUT GSE74999.SPI1.K-562_NABUT 160 bp overlap

ChIP K562 ENCFF410ORC 205 bp overlap

SUZ12 1 dataset

ChIP LNCaP GSE39459.SUZ12.LNCaP 197 bp overlap

Sox11 1 dataset

Motif DE_12h DE_12h-Sox11_MA0869.3 8 bp overlap

Sox6 1 dataset

Motif DE_12h DE_12h-Sox6_MA0515.1 10 bp overlap

Stat2 1 dataset

Motif DE_12h DE_12h-Stat2_MA1623.2 10 bp overlap

TBP 1 dataset

ChIP K-562 GSE55306.TBP.K-562 254 bp overlap

TCF12 1 dataset

ChIP Kasumi-1 GSE23730.TCF12.Kasumi-1 187 bp overlap

TP63 7 datasets

ChIP BxPC-3 GSE115461.TP63.BxPC-3 278 bp overlap

ChIP SUIT-2 GSE115461.TP63.SUIT-2 367 bp overlap

ChIP keratinocyte_D0 GSE59824.TP63.keratinocyte_D0 344 bp overlap

ChIP keratinocyte_D2 GSE59824.TP63.keratinocyte_D2 306 bp overlap

ChIP keratinocyte_D4 GSE59824.TP63.keratinocyte_D4 233 bp overlap

ChIP keratinocyte_D7 GSE59824.TP63.keratinocyte_D7 241 bp overlap

ChIP keratinocyte_epidermal GSE67382.TP63.keratinocyte_epidermal 149 bp overlap

TRIM28 1 dataset

ChIP hESC GSE115387.TRIM28.hESC 200 bp overlap

TWIST1 1 dataset

Motif DE_12h DE_12h-TWIST1_MA1123.3 8 bp overlap

Wt1 2 datasets

Motif DE_12h DE_12h-Wt1_MA1627.2 10 bp overlap

XRCC5 1 dataset

ChIP K-562 GSE120104.XRCC5.K-562 312 bp overlap

ZBTB7A 1 dataset

ChIP Hep-G2 ENCSR000BQA.ZBTB7A.Hep-G2 98 bp overlap

ZIM3 1 dataset

Motif DE_12h DE_12h-ZIM3_MA1709.2 11 bp overlap

ZNF133 1 dataset

ChIP HEK293 ENCFF844RST 239 bp overlap

ZNF148 3 datasets

Motif DE_12h DE_12h-ZNF148_MA1653.2 10 bp overlap

ChIP K-562 ENCSR018MSO.ZNF148.K-562 513 bp overlap

ChIP K562 ENCFF352SDL 513 bp overlap

ZNF281 3 datasets

Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap

ChIP K-562 GSE121133.ZNF281.K-562 494 bp overlap

ChIP K562 ENCFF594VNM 141 bp overlap

ZNF3 1 dataset

ChIP K-562 ENCSR195QFV.ZNF3.K-562 178 bp overlap

ZNF418 1 dataset

Motif DE_12h DE_12h-ZNF418_MA1980.1 15 bp overlap

ZNF462 2 datasets

ChIP GM23338 ENCFF896CCA 236 bp overlap

ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 344 bp overlap

ZNF467 1 dataset

ChIP HEK293 GSE76494.ZNF467.HEK293 153 bp overlap

ZNF512 1 dataset

ChIP K562 ENCFF601EMZ 126 bp overlap

ZNF592 2 datasets

ChIP K-562 ENCSR249BHQ.ZNF592.K-562 316 bp overlap

ChIP K562 ENCFF547OSS 508 bp overlap

ZNF675 1 dataset

Motif DE_12h DE_12h-ZNF675_MA1714.2 19 bp overlap

ZNF75A 1 dataset

Motif DE_12h DE_12h-ZNF75A_MA2097.1 12 bp overlap

ZNF75D 1 dataset

Motif DE_12h DE_12h-ZNF75D_MA1601.2 12 bp overlap

ZNF766 2 datasets

Motif DE_12h DE_12h-ZNF766_MA2098.1 9 bp overlap

ChIP K562 ENCFF348LDO 399 bp overlap

Zfp335 1 dataset

Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap