chr1 : 50,266,088 50,266,228
140 bp 58 TFs 0 linked genes
This 140 bp open chromatin element has no linked target genes and is bound by 58 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:50,261,088 – 50,271,228
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
58 transcription factors
Source
Cell type
ATRX 1 dataset
ChIP metastatic-neuroblastoma_SKNMM GSE100148.ATRX.metastatic-neuroblastoma_SKNMM 140 bp overlap
BNC2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR754GYI.BNC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 140 bp overlap
BRD4 8 datasets
ChIP BE2C GSE80151.BRD4.BE2C 140 bp overlap
ChIP CLB-Ga_Dinaciclib GSE133453.BRD4.CLB-Ga_Dinaciclib 140 bp overlap
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 140 bp overlap
ChIP MV4-11-B_DMSO GSE101821.BRD4.MV4-11-B_DMSO 140 bp overlap
ChIP Mutu-1_vehicle GSE84213.BRD4.Mutu-1_vehicle 129 bp overlap
ChIP SK-N-BE2-C GSE80151.BRD4.SK-N-BE2-C 140 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 140 bp overlap
ChIP SK-N-BE2-C_Resistant-veh GSE107706.BRD4.SK-N-BE2-C_Resistant-veh 140 bp overlap
CDK9 2 datasets
ChIP Kelly_CYC065 GSE107126.CDK9.Kelly_CYC065 140 bp overlap
ChIP Kelly_DMSO GSE107126.CDK9.Kelly_DMSO 140 bp overlap
CEBPB 1 dataset
ChIP HFOB_DIFF GSE82295.CEBPB.HFOB_DIFF 140 bp overlap
CHD2 2 datasets
ChIP SK-N-SH ENCFF669KMB 63 bp overlap
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 140 bp overlap
CREB5 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR758GOA.CREB5.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 140 bp overlap
CSDC2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR474KBG.CSDC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 140 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF093OYK 81 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 140 bp overlap
EP300 1 dataset
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 140 bp overlap
EZH2 1 dataset
ChIP GM23248 ENCFF506FWX 129 bp overlap
FOSL1 1 dataset
ChIP K-562 ENCSR239ZLZ.FOSL1.K-562 140 bp overlap
FOXJ3 1 dataset
ChIP SK-N-SH ENCFF124KVL 122 bp overlap
GATA2 6 datasets
ChIP SH-SY5Y ENCFF485YIB 140 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 140 bp overlap
ChIP SK-N-SH ENCFF764OZD 140 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 140 bp overlap
ChIP primary-endometrial-stromal-cell_IVD_P1 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P1 140 bp overlap
ChIP primary-endometrial-stromal-cell_IVD_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P2 140 bp overlap
GATA3 7 datasets
ChIP BE2C GSE65664.GATA3.BE2C 140 bp overlap
ChIP CLB-Ga GSE90683.GATA3.CLB-Ga 140 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 140 bp overlap
ChIP Kelly GSE94822.GATA3.Kelly 140 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 140 bp overlap
ChIP SK-N-SH ENCFF040SSB 50 bp overlap
ChIP SK-N-SH ENCFF040SSB 140 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 140 bp overlap
ChIP DE DE-GATA4-2 140 bp overlap
GATA6 5 datasets
ChIP DE DE-GATA6-1 140 bp overlap
ChIP DE DE-GATA6-2 140 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 140 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 140 bp overlap
ChIP foregut GSE117136.GATA6.foregut 119 bp overlap
GLIS3 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR507BWM.GLIS3.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 85 bp overlap
HAND2 2 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 140 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 140 bp overlap
IKZF1 1 dataset
ChIP K-562 ENCSR395HWC.IKZF1.K-562 134 bp overlap
ISL1 3 datasets
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 140 bp overlap
ChIP SK-N-SH ENCFF285GEQ 60 bp overlap
ChIP SK-N-SH ENCFF285GEQ 140 bp overlap
JUND 1 dataset
ChIP SK-N-SH ENCFF971JKN 123 bp overlap
KAT7 1 dataset
ChIP OCI-AML-3 GSE133516.KAT7.OCI-AML-3 140 bp overlap
KDM1A 1 dataset
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 140 bp overlap
KMT2A 1 dataset
ChIP MV4-11 GSE79899.KMT2A.MV4-11 140 bp overlap
L3MBTL2 2 datasets
ChIP K-562 ENCSR530XQI.L3MBTL2.K-562 140 bp overlap
ChIP K562 ENCFF320EQC 140 bp overlap
MAML3 2 datasets
ChIP SK-N-SH GSE69119.MAML3.SK-N-SH 139 bp overlap
ChIP SK-N-SH_RA GSE69119.MAML3.SK-N-SH_RA 108 bp overlap
MXI1 2 datasets
ChIP SK-N-SH ENCFF746HVJ 140 bp overlap
ChIP SK-N-SH ENCSR000EIA.MXI1.SK-N-SH 140 bp overlap
MYC 2 datasets
ChIP Kelly GSE138295.MYC.Kelly 125 bp overlap
ChIP SK-N-AS GSE138295.MYC.SK-N-AS 130 bp overlap
MYCN 10 datasets
ChIP BE2C GSE80151.MYCN.BE2C 140 bp overlap
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 134 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 140 bp overlap
ChIP Kelly GSE80151.MYCN.Kelly 140 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 140 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 140 bp overlap
ChIP NB-1643 GSE94782.MYCN.NB-1643 140 bp overlap
ChIP NGP GSE80151.MYCN.NGP 78 bp overlap
ChIP SK-N-BE2-C GSE80151.MYCN.SK-N-BE2-C 140 bp overlap
ChIP SK-N-BE2-C GSE94822.MYCN.SK-N-BE2-C 140 bp overlap
NCAPH2 1 dataset
ChIP IMR-90_alpha-amanitin-30min GSE118494.NCAPH2.IMR-90_alpha-amanitin-30min 68 bp overlap
PGR 2 datasets
ChIP myometrium_NP1 GSE137550.PGR.myometrium_NP1 61 bp overlap
ChIP myometrium_TP2 GSE137550.PGR.myometrium_TP2 138 bp overlap
PHOX2B 2 datasets
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 140 bp overlap
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 140 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 140 bp overlap
POLR2A 5 datasets
ChIP breast epithelium ENCFF065JSZ 140 bp overlap
ChIP esophagus muscularis mucosa ENCFF791ZXN 140 bp overlap
ChIP sigmoid colon ENCFF748YVT 69 bp overlap
ChIP vagina ENCFF305NWS 98 bp overlap
ChIP vagina ENCFF384GAB 131 bp overlap
PPARA 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR602QEJ.PPARA.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 140 bp overlap
RAD21 3 datasets
ChIP SK-N-SH ENCFF747MAS 140 bp overlap
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 140 bp overlap
ChIP neuroblastoma GSE115862.RAD21.neuroblastoma 119 bp overlap
RCOR1 1 dataset
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 140 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 140 bp overlap
SMARCA4 1 dataset
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 134 bp overlap
SNAI2 2 datasets
ChIP SK-N-SH ENCFF449PID 119 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR106GVM.SNAI2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 140 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 113 bp overlap
SRF 1 dataset
ChIP K-562 ENCSR582IAO.SRF.K-562 82 bp overlap
TBX2 2 datasets
ChIP Kelly GSE94822.TBX2.Kelly 140 bp overlap
ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 140 bp overlap
TCF4 2 datasets
ChIP SH-SY5Y GSE96915.TCF4.SH-SY5Y 70 bp overlap
ChIP SK-N-SH ENCFF270OWF 116 bp overlap
TEAD4 4 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 140 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 140 bp overlap
ChIP SK-N-SH ENCFF754TJT 97 bp overlap
ChIP SK-N-SH ENCSR000BUQ.TEAD4.SK-N-SH 120 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 140 bp overlap
TSHZ2 3 datasets
ChIP SK-N-SH ENCFF182EBB 69 bp overlap
ChIP SK-N-SH ENCFF182EBB 140 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 140 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 140 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 140 bp overlap
ZFP3 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR581GUY.ZFP3.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 140 bp overlap
ZNF175 1 dataset
ChIP K562 ENCFF497AEJ 140 bp overlap
ZNF395 1 dataset
ChIP K562 ENCFF464EIT 140 bp overlap
ZNF8 1 dataset
ChIP SK-N-SH ENCFF131SMT 68 bp overlap