chr2 : 180,448,774 180,449,476
702 bp 139 TFs 0 linked genes
This 702 bp open chromatin element has no linked target genes and is bound by 139 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:180,443,774 – 180,454,476
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
139 transcription factors
Source
Cell type
ALX3 1 dataset
Motif DE_60h DE_60h-ALX3_MA0634.2 6 bp overlap
ARGFX 1 dataset
Motif DE_60h DE_60h-ARGFX_MA1463.2 8 bp overlap
ASCL1 2 datasets
ChIP NCI-H82 GSE69394.ASCL1.NCI-H82 315 bp overlap
ChIP NCI-H82 GSE69394.ASCL1.NCI-H82 181 bp overlap
Alx1 1 dataset
Motif DE_60h DE_60h-Alx1_MA0854.2 8 bp overlap
Alx4 1 dataset
Motif DE_60h DE_60h-Alx4_MA0853.2 12 bp overlap
Arx 1 dataset
Motif DE_60h DE_60h-Arx_MA0874.2 10 bp overlap
BARX1 1 dataset
Motif DE_60h DE_60h-BARX1_MA0875.2 6 bp overlap
BSX 1 dataset
Motif DE_60h DE_60h-BSX_MA0876.2 6 bp overlap
CRX 1 dataset
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 286 bp overlap
Crx 1 dataset
Motif DE_60h DE_60h-Crx_MA0467.3 6 bp overlap
DLX1 1 dataset
Motif DE_60h DE_60h-DLX1_MA0879.3 6 bp overlap
DLX6 1 dataset
Motif DE_60h DE_60h-DLX6_MA0882.2 6 bp overlap
DRGX 1 dataset
Motif DE_60h DE_60h-DRGX_MA1481.2 6 bp overlap
DUX4 1 dataset
Motif DE_60h DE_60h-DUX4_MA0468.1 11 bp overlap
DUXA 1 dataset
Motif DE_60h DE_60h-DUXA_MA0884.2 13 bp overlap
Dlx2 1 dataset
Motif DE_60h DE_60h-Dlx2_MA0885.3 8 bp overlap
Dlx3 1 dataset
Motif DE_60h DE_60h-Dlx3_MA0880.2 6 bp overlap
Dlx4 1 dataset
Motif DE_60h DE_60h-Dlx4_MA0881.2 6 bp overlap
Dlx5 1 dataset
Motif DE_60h DE_60h-Dlx5_MA1476.3 8 bp overlap
Dmbx1 1 dataset
Motif DE_60h DE_60h-Dmbx1_MA0883.2 10 bp overlap
EMX1 1 dataset
Motif DE_60h DE_60h-EMX1_MA0612.3 6 bp overlap
EMX2 1 dataset
Motif DE_60h DE_60h-EMX2_MA0886.2 6 bp overlap
EN1 1 dataset
Motif DE_60h DE_60h-EN1_MA0027.3 6 bp overlap
EN2 2 datasets
Motif DE_60h DE_60h-EN2_MA0642.3 7 bp overlap
Motif DE_60h DE_60h-EN2_MA0642.3 7 bp overlap
EOMES 2 datasets
Motif DE_60h DE_60h-EOMES_MA0800.2 9 bp overlap
ChIP hESC GSE26097.EOMES.hESC 188 bp overlap
ESX1 1 dataset
Motif DE_60h DE_60h-ESX1_MA0644.3 7 bp overlap
EVX1 1 dataset
Motif DE_60h DE_60h-EVX1_MA0887.2 6 bp overlap
EVX2 1 dataset
Motif DE_60h DE_60h-EVX2_MA0888.2 6 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 442 bp overlap
ChIP DE DE-FOXA2-2 494 bp overlap
FOXC1 1 dataset
Motif DE_60h DE_60h-FOXC1_MA0032.2 11 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 446 bp overlap
ChIP DE DE-GATA4-2 500 bp overlap
GATA6 2 datasets
ChIP DE DE-GATA6-1 418 bp overlap
ChIP DE DE-GATA6-2 507 bp overlap
GBX1 2 datasets
Motif DE_60h DE_60h-GBX1_MA0889.2 7 bp overlap
Motif DE_60h DE_60h-GBX1_MA0889.2 7 bp overlap
GBX2 1 dataset
Motif DE_60h DE_60h-GBX2_MA0890.2 6 bp overlap
GSC 1 dataset
Motif DE_60h DE_60h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif DE_60h DE_60h-GSC2_MA0891.2 6 bp overlap
GSX1 1 dataset
Motif DE_60h DE_60h-GSX1_MA0892.2 6 bp overlap
GSX2 1 dataset
Motif DE_60h DE_60h-GSX2_MA0893.3 7 bp overlap
HESX1 1 dataset
Motif DE_60h DE_60h-HESX1_MA0894.2 6 bp overlap
HMBOX1 1 dataset
Motif DE_60h DE_60h-HMBOX1_MA0895.2 7 bp overlap
HOXA1 1 dataset
Motif DE_60h DE_60h-HOXA1_MA1495.2 6 bp overlap
HOXA2 1 dataset
Motif DE_60h DE_60h-HOXA2_MA0900.3 6 bp overlap
HOXA3 1 dataset
Motif DE_60h DE_60h-HOXA3_MA2119.1 7 bp overlap
HOXA7 1 dataset
Motif DE_60h DE_60h-HOXA7_MA1498.3 6 bp overlap
HOXB1 1 dataset
Motif DE_60h DE_60h-HOXB1_MA2093.1 7 bp overlap
HOXB2 1 dataset
Motif DE_60h DE_60h-HOXB2_MA0902.3 6 bp overlap
HOXB3 1 dataset
Motif DE_60h DE_60h-HOXB3_MA0903.2 6 bp overlap
HOXB4 1 dataset
Motif DE_60h DE_60h-HOXB4_MA1499.2 6 bp overlap
HOXB5 1 dataset
Motif DE_60h DE_60h-HOXB5_MA0904.3 6 bp overlap
HOXC4 1 dataset
Motif DE_60h DE_60h-HOXC4_MA1504.2 6 bp overlap
HOXC8 1 dataset
Motif DE_60h DE_60h-HOXC8_MA1505.2 6 bp overlap
HOXD3 2 datasets
Motif DE_60h DE_60h-HOXD3_MA0912.2 8 bp overlap
Motif DE_60h DE_60h-HOXD3_MA0912.2 8 bp overlap
HOXD4 1 dataset
Motif DE_60h DE_60h-HOXD4_MA1507.2 6 bp overlap
Hoxd13 1 dataset
Motif DE_60h DE_60h-Hoxd13_MA0909.4 7 bp overlap
ISX 1 dataset
Motif DE_60h DE_60h-ISX_MA0654.2 6 bp overlap
LBX1 2 datasets
Motif DE_60h DE_60h-LBX1_MA0618.2 7 bp overlap
Motif DE_60h DE_60h-LBX1_MA0618.2 7 bp overlap
LBX2 1 dataset
Motif DE_60h DE_60h-LBX2_MA0699.2 6 bp overlap
LHX2 1 dataset
Motif DE_60h DE_60h-LHX2_MA0700.3 6 bp overlap
LHX5 1 dataset
Motif DE_60h DE_60h-LHX5_MA1519.2 7 bp overlap
LHX6 1 dataset
Motif DE_60h DE_60h-LHX6_MA0658.2 8 bp overlap
LHX9 2 datasets
Motif DE_60h DE_60h-LHX9_MA0701.3 7 bp overlap
Motif DE_60h DE_60h-LHX9_MA0701.3 7 bp overlap
LMX1A 1 dataset
Motif DE_60h DE_60h-LMX1A_MA0702.3 7 bp overlap
LMX1B 1 dataset
Motif DE_60h DE_60h-LMX1B_MA0703.3 8 bp overlap
Lhx1 1 dataset
Motif DE_60h DE_60h-Lhx1_MA1518.3 10 bp overlap
Lhx3 1 dataset
Motif DE_60h DE_60h-Lhx3_MA0135.2 12 bp overlap
Lhx4 1 dataset
Motif DE_60h DE_60h-Lhx4_MA0704.2 6 bp overlap
Lhx8 1 dataset
Motif DE_60h DE_60h-Lhx8_MA0705.2 6 bp overlap
MEF2A 1 dataset
Motif DE_60h DE_60h-MEF2A_MA0052.5 10 bp overlap
MEF2B 1 dataset
Motif DE_60h DE_60h-MEF2B_MA0660.1 12 bp overlap
MEIS1 2 datasets
Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap
Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap
MEOX1 1 dataset
Motif DE_60h DE_60h-MEOX1_MA0661.2 7 bp overlap
MEOX2 1 dataset
Motif DE_60h DE_60h-MEOX2_MA0706.2 7 bp overlap
MIXL1 1 dataset
Motif DE_60h DE_60h-MIXL1_MA0662.2 6 bp overlap
MNX1 1 dataset
Motif DE_60h DE_60h-MNX1_MA0707.3 6 bp overlap
MSX1 1 dataset
Motif DE_60h DE_60h-MSX1_MA0666.3 6 bp overlap
MSX2 1 dataset
Motif DE_60h DE_60h-MSX2_MA0708.3 6 bp overlap
Msx3 1 dataset
Motif DE_60h DE_60h-Msx3_MA0709.2 6 bp overlap
NEUROD1 4 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 702 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 399 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 702 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 189 bp overlap
NEUROG2 1 dataset
ChIP MRC-5_NFD_05DPT GSE75910.NEUROG2.MRC-5_NFD_05DPT 199 bp overlap
NFATC3 1 dataset
Motif DE_60h DE_60h-NFATC3_MA0625.3 6 bp overlap
NKX6-1 1 dataset
Motif DE_60h DE_60h-NKX6-1_MA0674.2 7 bp overlap
NKX6-2 1 dataset
Motif DE_60h DE_60h-NKX6-2_MA0675.2 6 bp overlap
NOTO 1 dataset
Motif DE_60h DE_60h-NOTO_MA0710.2 7 bp overlap
Nfatc1 1 dataset
Motif DE_60h DE_60h-Nfatc1_MA0624.3 6 bp overlap
Nobox 1 dataset
Motif DE_60h DE_60h-Nobox_MA0125.2 6 bp overlap
Nr2e3 1 dataset
Motif DE_60h DE_60h-Nr2e3_MA0164.2 6 bp overlap
OSR1 1 dataset
Motif DE_60h DE_60h-OSR1_MA1542.2 8 bp overlap
OSR2 1 dataset
Motif DE_60h DE_60h-OSR2_MA1646.2 8 bp overlap
OTX1 1 dataset
Motif DE_60h DE_60h-OTX1_MA0711.2 6 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 310 bp overlap
PAX3 2 datasets
Motif DE_60h DE_60h-PAX3_MA0780.1 10 bp overlap
Motif DE_60h DE_60h-PAX3_MA1546.2 14 bp overlap
PAX4 1 dataset
Motif DE_60h DE_60h-PAX4_MA0068.2 8 bp overlap
PBX3 1 dataset
Motif DE_60h DE_60h-PBX3_MA1114.2 11 bp overlap
PDX1 1 dataset
Motif DE_60h DE_60h-PDX1_MA0132.3 6 bp overlap
PGR 1 dataset
Motif DE_60h DE_60h-PGR_MA2327.1 9 bp overlap
PHOX2A 1 dataset
Motif DE_60h DE_60h-PHOX2A_MA0713.1 11 bp overlap
PHOX2B 1 dataset
Motif DE_60h DE_60h-PHOX2B_MA0681.3 12 bp overlap
PITX1 1 dataset
Motif DE_60h DE_60h-PITX1_MA0682.3 6 bp overlap
PITX3 1 dataset
Motif DE_60h DE_60h-PITX3_MA0714.2 6 bp overlap
PKNOX1 1 dataset
Motif DE_60h DE_60h-PKNOX1_MA0782.3 10 bp overlap
POU6F1 2 datasets
Motif DE_60h DE_60h-POU6F1_MA0628.2 6 bp overlap
Motif DE_60h DE_60h-POU6F1_MA1549.2 7 bp overlap
POU6F2 2 datasets
Motif DE_60h DE_60h-POU6F2_MA0793.2 9 bp overlap
Motif DE_60h DE_60h-POU6F2_MA0793.2 9 bp overlap
PROP1 1 dataset
Motif DE_60h DE_60h-PROP1_MA0715.1 11 bp overlap
PRRX1 1 dataset
Motif DE_60h DE_60h-PRRX1_MA0716.2 6 bp overlap
PRRX2 2 datasets
Motif DE_60h DE_60h-PRRX2_MA0075.4 7 bp overlap
Motif DE_60h DE_60h-PRRX2_MA0075.4 7 bp overlap
Pax7 1 dataset
Motif DE_60h DE_60h-Pax7_MA0680.3 10 bp overlap
Prdm4 1 dataset
Motif DE_60h DE_60h-Prdm4_MA1647.3 11 bp overlap
RAX 1 dataset
Motif DE_60h DE_60h-RAX_MA0718.2 6 bp overlap
RAX2 1 dataset
Motif DE_60h DE_60h-RAX2_MA0717.2 6 bp overlap
RELB 1 dataset
Motif DE_60h DE_60h-RELB_MA1117.2 7 bp overlap
RHOXF1 1 dataset
Motif DE_60h DE_60h-RHOXF1_MA0719.2 6 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 212 bp overlap
Rarg 1 dataset
Motif DE_60h DE_60h-Rarg_MA0860.1 17 bp overlap
SHOX 1 dataset
Motif DE_60h DE_60h-SHOX_MA0630.2 6 bp overlap
SIX2 1 dataset
Motif DE_60h DE_60h-SIX2_MA1119.2 11 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 401 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 351 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 343 bp overlap
Shox2 1 dataset
Motif DE_60h DE_60h-Shox2_MA0720.2 6 bp overlap
Six4 1 dataset
Motif DE_60h DE_60h-Six4_MA2001.2 7 bp overlap
TBX1 2 datasets
Motif DE_60h DE_60h-TBX1_MA0805.1 8 bp overlap
Motif DE_60h DE_60h-TBX1_MA0805.1 8 bp overlap
TBX15 1 dataset
Motif DE_60h DE_60h-TBX15_MA0803.1 8 bp overlap
TBX18 1 dataset
Motif DE_60h DE_60h-TBX18_MA1565.2 9 bp overlap
TBX2 1 dataset
Motif DE_60h DE_60h-TBX2_MA0688.2 9 bp overlap
TBX3 1 dataset
Motif DE_60h DE_60h-TBX3_MA1566.3 9 bp overlap
TBX4 1 dataset
Motif DE_60h DE_60h-TBX4_MA0806.1 8 bp overlap
TBX5 1 dataset
Motif DE_60h DE_60h-TBX5_MA0807.1 8 bp overlap
TLX2 1 dataset
Motif DE_60h DE_60h-TLX2_MA1577.2 6 bp overlap
UNCX 1 dataset
Motif DE_60h DE_60h-UNCX_MA0721.2 6 bp overlap
VAX1 1 dataset
Motif DE_60h DE_60h-VAX1_MA0722.2 7 bp overlap
VAX2 1 dataset
Motif DE_60h DE_60h-VAX2_MA0723.3 6 bp overlap
VENTX 1 dataset
Motif DE_60h DE_60h-VENTX_MA0724.1 9 bp overlap
VSX1 1 dataset
Motif DE_60h DE_60h-VSX1_MA0725.2 7 bp overlap
VSX2 1 dataset
Motif DE_60h DE_60h-VSX2_MA0726.2 7 bp overlap
ZNF214 1 dataset
Motif DE_60h DE_60h-ZNF214_MA1975.2 13 bp overlap
ZNF667 1 dataset
Motif DE_60h DE_60h-ZNF667_MA1984.2 11 bp overlap
mix-a 1 dataset
Motif DE_60h DE_60h-mix-a_MA0621.2 7 bp overlap