chr2 : 161,243,171 – 161,243,817
646 bp 84 TFs 1 linked gene
This 646 bp open chromatin element is linked to LINC01806 and is bound by 84 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LINC01806 920 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:161,238,171 – 161,248,817
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
84 transcription factors
Source
Cell type
ASCL1 1 dataset
Motif DE_36h DE_36h-ASCL1_MA1100.3 8 bp overlap
ATF7 1 dataset
ChIP GM12878 ENCSR014YCR.ATF7.GM12878 244 bp overlap
Ascl2 1 dataset
Motif DE_36h DE_36h-Ascl2_MA0816.1 10 bp overlap
BCL6 2 datasets
ChIP B-cell_GERMINAL_CENTER GSE68349.BCL6.B-cell_GERMINAL_CENTER 279 bp overlap
ChIP SU-DHL-4 GSE119038.BCL6.SU-DHL-4 197 bp overlap
BCOR 1 dataset
ChIP B-cell_GERMINAL_CENTER GSE43350.BCOR.B-cell_GERMINAL_CENTER 136 bp overlap
BHLHE22 1 dataset
Motif DE_36h DE_36h-BHLHE22_MA1635.2 6 bp overlap
BRD4 10 datasets
ChIP CLL_patient2 GSE109411.BRD4.CLL_patient2 609 bp overlap
ChIP CLL_patient2_4h_CpG GSE109411.BRD4.CLL_patient2_4h_CpG 422 bp overlap
ChIP CLL_patient3_4h_CpG_BET GSE109411.BRD4.CLL_patient3_4h_CpG_BET 344 bp overlap
ChIP CLL_patient4_4h_CpG GSE109411.BRD4.CLL_patient4_4h_CpG 618 bp overlap
ChIP DND41_E GSE54379.BRD4.DND41_E 222 bp overlap
ChIP GM15850_DMSO GSE99402.BRD4.GM15850_DMSO 234 bp overlap
ChIP KOPT-K1 GSE54379.BRD4.KOPT-K1 310 bp overlap
ChIP MOLT-4_DMSO GSE79288.BRD4.MOLT-4_DMSO 193 bp overlap
ChIP RH4 GSE83726.BRD4.RH4 202 bp overlap
ChIP RH4_shscr GSE140115.BRD4.RH4_shscr 201 bp overlap
Bhlha15 1 dataset
Motif DE_36h DE_36h-Bhlha15_MA1472.3 8 bp overlap
CDK7 1 dataset
ChIP Jurkat GSE50622.CDK7.Jurkat 191 bp overlap
CDK9 1 dataset
ChIP MOLT-4_DMSO GSE79288.CDK9.MOLT-4_DMSO 146 bp overlap
CREBBP 1 dataset
ChIP tonsil_GCBc_p4 GSE89688.CREBBP.tonsil_GCBc_p4 244 bp overlap
DPF2 1 dataset
ChIP GM12878 ENCSR509FWH.DPF2.GM12878 423 bp overlap
E2F8 1 dataset
Motif DE_36h DE_36h-E2F8_MA0865.3 9 bp overlap
EBF1 2 datasets
ChIP GM12878 ENCFF167CZS 321 bp overlap
ChIP LCL GSE75503.EBF1.LCL 232 bp overlap
EGR1 2 datasets
Motif DE_36h DE_36h-EGR1_MA0162.5 10 bp overlap
Motif DE_60h DE_60h-EGR1_MA0162.5 10 bp overlap
EGR2 2 datasets
Motif DE_36h DE_36h-EGR2_MA0472.2 11 bp overlap
Motif DE_60h DE_60h-EGR2_MA0472.2 11 bp overlap
EGR3 2 datasets
Motif DE_36h DE_36h-EGR3_MA0732.2 11 bp overlap
Motif DE_60h DE_60h-EGR3_MA0732.2 11 bp overlap
EGR4 2 datasets
Motif DE_36h DE_36h-EGR4_MA0733.2 11 bp overlap
Motif DE_60h DE_60h-EGR4_MA0733.2 11 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 160 bp overlap
ERF::FOXI1 1 dataset
Motif DE_36h DE_36h-ERFFOXI1_MA1935.2 10 bp overlap
ETV2::FOXI1 1 dataset
Motif DE_36h DE_36h-ETV2FOXI1_MA1942.2 11 bp overlap
EZH2 3 datasets
ChIP GM23338 ENCFF613YON 385 bp overlap
ChIP GM23338 ENCFF613YON 319 bp overlap
ChIP GM23338 ENCFF613YON 51 bp overlap
Elf5 3 datasets
Motif DE_36h DE_36h-Elf5_MA0136.4 8 bp overlap
Motif DE_48h DE_48h-Elf5_MA0136.4 8 bp overlap
Motif DE_60h DE_60h-Elf5_MA0136.4 8 bp overlap
FLI1::FOXI1 1 dataset
Motif DE_36h DE_36h-FLI1FOXI1_MA1950.2 11 bp overlap
FOS 1 dataset
ChIP HCT-116_A7A GSE152144.FOS.HCT-116_A7A 70 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-2 377 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 124 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 406 bp overlap
ChIP DE DE-GATA4-2 530 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 396 bp overlap
ChIP DE DE-GATA6-2 516 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 485 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 562 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 529 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 526 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 614 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 617 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 429 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 238 bp overlap
HIC2 1 dataset
Motif DE_36h DE_36h-HIC2_MA0738.2 6 bp overlap
IKZF1 3 datasets
Motif DE_36h DE_36h-IKZF1_MA1508.2 8 bp overlap
Motif DE_48h DE_48h-IKZF1_MA1508.2 8 bp overlap
Motif DE_60h DE_60h-IKZF1_MA1508.2 8 bp overlap
IKZF2 3 datasets
Motif DE_36h DE_36h-IKZF2_MA2326.1 6 bp overlap
Motif DE_48h DE_48h-IKZF2_MA2326.1 6 bp overlap
Motif DE_60h DE_60h-IKZF2_MA2326.1 6 bp overlap
IRF4 2 datasets
ChIP B-cell GSE142493.IRF4.B-cell 192 bp overlap
ChIP OCI-Ly10 GSE142493.IRF4.OCI-Ly10 235 bp overlap
KMT2A 2 datasets
ChIP MOLM-13_CBS79-KO-VP-HOTTIP GSE114981.KMT2A.MOLM-13_CBS79-KO-VP-HOTTIP 139 bp overlap
ChIP SHI-1 GSE95511.KMT2A.SHI-1 149 bp overlap
MCM3 1 dataset
ChIP K-562 ENCSR990AZC.MCM3.K-562 479 bp overlap
MEF2B 2 datasets
ChIP GM12878 ENCSR177VFS.MEF2B.GM12878 291 bp overlap
ChIP tonsil GSE110682.MEF2B.tonsil 453 bp overlap
MGA::EVX1 3 datasets
Motif DE_36h DE_36h-MGAEVX1_MA1960.2 11 bp overlap
Motif DE_48h DE_48h-MGAEVX1_MA1960.2 11 bp overlap
Motif DE_60h DE_60h-MGAEVX1_MA1960.2 11 bp overlap
MSC 1 dataset
Motif DE_36h DE_36h-MSC_MA0665.1 10 bp overlap
MTA2 2 datasets
ChIP GM12878 ENCSR293QAR.MTA2.GM12878 264 bp overlap
ChIP RH4 GSE155861.MTA2.RH4 370 bp overlap
MYB 7 datasets
Motif DE_36h DE_36h-MYB_MA0100.4 6 bp overlap
Motif DE_48h DE_48h-MYB_MA0100.4 6 bp overlap
Motif DE_60h DE_60h-MYB_MA0100.4 6 bp overlap
ChIP Jurkat GSE59657.MYB.Jurkat 128 bp overlap
ChIP Jurkat GSE59657.MYB.Jurkat 182 bp overlap
ChIP Loucy GSE94000.MYB.Loucy 107 bp overlap
ChIP PF-382 GSE94000.MYB.PF-382 67 bp overlap
MYF5 1 dataset
Motif DE_36h DE_36h-MYF5_MA1641.2 8 bp overlap
MYOD1 4 datasets
Motif DE_36h DE_36h-MYOD1_MA0499.3 9 bp overlap
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 268 bp overlap
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 351 bp overlap
ChIP myoblast GSE50413.MYOD1.myoblast 213 bp overlap
MYOG 1 dataset
Motif DE_36h DE_36h-MYOG_MA0500.3 8 bp overlap
MZF1 3 datasets
Motif DE_36h DE_36h-MZF1_MA0056.3 8 bp overlap
Motif DE_48h DE_48h-MZF1_MA0056.3 8 bp overlap
Motif DE_60h DE_60h-MZF1_MA0056.3 8 bp overlap
NEUROD1 5 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 366 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 187 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 244 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 179 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 190 bp overlap
NHLH1 1 dataset
Motif DE_36h DE_36h-NHLH1_MA0048.3 9 bp overlap
NUTM1 1 dataset
ChIP NUT_DMSO GSE133122.NUTM1.NUT_DMSO 294 bp overlap
Neurod2 1 dataset
Motif DE_36h DE_36h-Neurod2_MA1993.2 6 bp overlap
Nr2e3 3 datasets
Motif DE_36h DE_36h-Nr2e3_MA0164.2 6 bp overlap
Motif DE_48h DE_48h-Nr2e3_MA0164.2 6 bp overlap
Motif DE_60h DE_60h-Nr2e3_MA0164.2 6 bp overlap
Olig2 1 dataset
Motif DE_36h DE_36h-Olig2_MA1997.2 6 bp overlap
PHIP 2 datasets
ChIP HCT-116_MLL1-KO__ab833 GSE101646.PHIP.HCT-116_MLL1-KO__ab833 403 bp overlap
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 285 bp overlap
POLR2A 9 datasets
ChIP GM12878 ENCFF263VRI 481 bp overlap
ChIP GM12891 ENCFF012SUT 538 bp overlap
ChIP GM18505 ENCFF311CYB 511 bp overlap
ChIP GM18526 ENCFF599EPS 431 bp overlap
ChIP GM18951 ENCFF079KKO 497 bp overlap
ChIP GM19099 ENCFF726IBN 159 bp overlap
ChIP GM19193 ENCFF599VTO 525 bp overlap
ChIP Raji ENCFF613VGX 212 bp overlap
ChIP thyroid gland ENCFF979LRR 395 bp overlap
Prdm5 1 dataset
Motif DE_36h DE_36h-Prdm5_MA1999.2 11 bp overlap
Ptf1A 1 dataset
Motif DE_36h DE_36h-Ptf1A_MA1619.2 8 bp overlap
RBPJ 1 dataset
ChIP LCL GSE75503.RBPJ.LCL 307 bp overlap
RELB 1 dataset
ChIP GM12878 ENCSR387QUV.RELB.GM12878 151 bp overlap
RNF2 2 datasets
ChIP WA09 GSE105028.RNF2.WA09 122 bp overlap
ChIP WA09_heat-shock GSE105028.RNF2.WA09_heat-shock 113 bp overlap
Rhox11 1 dataset
Motif DE_36h DE_36h-Rhox11_MA0629.2 9 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 295 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 593 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 435 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 239 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 303 bp overlap
SMARCA4 5 datasets
ChIP CTV-1_DSG GSE128835.SMARCA4.CTV-1_DSG 488 bp overlap
ChIP CTV-1_FLAG_SPI1-mut GSE128835.SMARCA4.CTV-1_FLAG_SPI1-mut 187 bp overlap
ChIP CTV-1_delA GSE128835.SMARCA4.CTV-1_delA 176 bp overlap
ChIP CTV-1_delQ GSE128835.SMARCA4.CTV-1_delQ 168 bp overlap
ChIP TTC-549_NoDox GSE71504.SMARCA4.TTC-549_NoDox 189 bp overlap
SMARCC1 1 dataset
ChIP TTC-549_NoDox GSE71504.SMARCC1.TTC-549_NoDox 646 bp overlap
SPI1 2 datasets
ChIP CTV-1_delA GSE128835.SPI1.CTV-1_delA 281 bp overlap
ChIP CTV-1_delQ GSE128835.SPI1.CTV-1_delQ 276 bp overlap
STAT1_pS727 1 dataset
ChIP SET-2 GSE100566.STAT1_pS727.SET-2 366 bp overlap
STAT3 3 datasets
Motif DE_36h DE_36h-STAT3_MA0144.3 9 bp overlap
Motif DE_48h DE_48h-STAT3_MA0144.3 9 bp overlap
Motif DE_60h DE_60h-STAT3_MA0144.3 9 bp overlap
SUPT5H 1 dataset
ChIP HCT-116_pThr806 GSE138548.SUPT5H.HCT-116_pThr806 189 bp overlap
TAF1 1 dataset
ChIP GM12878 ENCSR000BGS.TAF1.GM12878 160 bp overlap
TBP 1 dataset
ChIP GM12878 ENCFF571OXR 385 bp overlap
TBX21 3 datasets
ChIP GM12878 ENCFF951HUW 232 bp overlap
ChIP GM12878 ENCFF951HUW 440 bp overlap
ChIP GM12878 ENCSR739IHN.TBX21.GM12878 224 bp overlap
TCF7L2 1 dataset
ChIP LNCaP GSE51621.TCF7L2.LNCaP 275 bp overlap
TERF1 1 dataset
ChIP LCL GSE55053.TERF1.LCL 144 bp overlap
TRIM22 1 dataset
ChIP GM12878 ENCSR637QAM.TRIM22.GM12878 395 bp overlap
Tcf12 1 dataset
Motif DE_36h DE_36h-Tcf12_MA0521.3 6 bp overlap
Tcf21 1 dataset
Motif DE_36h DE_36h-Tcf21_MA0832.2 10 bp overlap
Twist2 1 dataset
Motif DE_36h DE_36h-Twist2_MA0633.3 6 bp overlap
YY1 3 datasets
ChIP ALL GSE145549.YY1.ALL 249 bp overlap
ChIP ALL GSE145549.YY1.ALL 71 bp overlap
ChIP RH4_DMSO-6H GSE116344.YY1.RH4_DMSO-6H 286 bp overlap
YY1AP1 1 dataset
ChIP PC-9_1DF GSE131687.YY1AP1.PC-9_1DF 178 bp overlap
ZBTB18 1 dataset
Motif DE_36h DE_36h-ZBTB18_MA0698.2 11 bp overlap
ZKSCAN3 3 datasets
Motif DE_36h DE_36h-ZKSCAN3_MA1973.2 14 bp overlap
Motif DE_48h DE_48h-ZKSCAN3_MA1973.2 14 bp overlap
Motif DE_60h DE_60h-ZKSCAN3_MA1973.2 14 bp overlap
ZNF184 1 dataset
Motif DE_36h DE_36h-ZNF184_MA2120.1 13 bp overlap
ZNF324 3 datasets
Motif DE_36h DE_36h-ZNF324_MA1977.2 14 bp overlap
Motif DE_48h DE_48h-ZNF324_MA1977.2 14 bp overlap
Motif DE_60h DE_60h-ZNF324_MA1977.2 14 bp overlap
ZNF490 1 dataset
ChIP HEK293 GSE76494.ZNF490.HEK293 160 bp overlap
ZNF75D 3 datasets
Motif DE_36h DE_36h-ZNF75D_MA1601.2 12 bp overlap
Motif DE_48h DE_48h-ZNF75D_MA1601.2 12 bp overlap
Motif DE_60h DE_60h-ZNF75D_MA1601.2 12 bp overlap
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