chr1 : 42,164,545 – 42,165,151
606 bp 67 TFs 1 linked gene
This 606 bp open chromatin element is linked to GUCA2A and is bound by 67 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
GUCA2A at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:42,159,545 – 42,170,151
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
67 transcription factors
Source
Cell type
AR 1 dataset
ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 157 bp overlap
ARID2 2 datasets
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-K785R 381 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-K785R 88 bp overlap
ARNT 1 dataset
ChIP MCF-7_Ctrl GSE85352.ARNT.MCF-7_Ctrl 91 bp overlap
ARNT2 1 dataset
ChIP HepG2 ENCFF940DGN 113 bp overlap
BCOR 1 dataset
ChIP VCaP_EtOH GSE122572.BCOR.VCaP_EtOH 154 bp overlap
BRD4 4 datasets
ChIP COLO-741 GSE73319.BRD4.COLO-741 312 bp overlap
ChIP MCF-7_ARID1A-KO GSE123284.BRD4.MCF-7_ARID1A-KO 231 bp overlap
ChIP MCF-7_ARID1A-KO_4-OHT GSE123284.BRD4.MCF-7_ARID1A-KO_4-OHT 303 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.BRD4.MCF-7_parental_4-hydroxytamoxifen 98 bp overlap
CBFA2T2 1 dataset
ChIP NCCIT GSE71675.CBFA2T2.NCCIT 327 bp overlap
CBX4 1 dataset
ChIP hMSC GSE117084.CBX4.hMSC 194 bp overlap
CDX2 1 dataset
ChIP Caco-2_DIFF GSE23436.CDX2.Caco-2_DIFF 216 bp overlap
CTCF 17 datasets
ChIP Caco-2 ENCFF753NZV 111 bp overlap
ChIP Caco-2 ENCFF753NZV 321 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 123 bp overlap
ChIP HFFc6 ENCFF005CJI 243 bp overlap
ChIP HT-1080_CBL0137-6h GSE122462.CTCF.HT-1080_CBL0137-6h 68 bp overlap
ChIP HepG2 ENCFF127KUP 115 bp overlap
ChIP VCaP ENCSR265ARE.CTCF.VCaP 148 bp overlap
ChIP colon_transverse ENCSR102CSD.CTCF.colon_transverse 86 bp overlap
ChIP colon_transverse ENCSR833FWC.CTCF.colon_transverse 93 bp overlap
ChIP colon_transverse ENCSR833FWC.CTCF.colon_transverse 119 bp overlap
ChIP endodermal cell ENCFF471YCZ 163 bp overlap
ChIP epithelial cell of esophagus ENCFF946GGT 75 bp overlap
ChIP esophagus_squamous-epithelium ENCSR450FRI.CTCF.esophagus_squamous-epithelium 55 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 293 bp overlap
ChIP keratinocyte ENCSR000DWX.CTCF.keratinocyte 82 bp overlap
ChIP transverse colon ENCFF749DPF 100 bp overlap
ChIP transverse colon ENCFF749DPF 302 bp overlap
CTCF_s 1 dataset
ChIP HeLa-S3_biotin GSE108869.CTCF_s.HeLa-S3_biotin 60 bp overlap
E2F4 2 datasets
ChIP Hep-G2 ENCSR924LSO.E2F4.Hep-G2 266 bp overlap
ChIP HepG2 ENCFF311TOD 440 bp overlap
ESR1 3 datasets
ChIP MCF-7_E2 ERP000209.ESR1.MCF-7_E2 246 bp overlap
ChIP MCF-7_E2_30min GSE108883.ESR1.MCF-7_E2_30min 181 bp overlap
ChIP MCF-7_RAD001 GSE103023.ESR1.MCF-7_RAD001 235 bp overlap
EZH2 2 datasets
ChIP ProEs GSE59087.EZH2.ProEs 176 bp overlap
ChIP SU-DHL-6 GSE134136.EZH2.SU-DHL-6 134 bp overlap
FIGLA 1 dataset
Motif DE_72h DE_72h-FIGLA_MA0820.2 6 bp overlap
GATA1 2 datasets
ChIP K-562 GSE107726.GATA1.K-562 193 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 172 bp overlap
GATA1::TAL1 1 dataset
Motif DE_72h DE_72h-GATA1TAL1_MA0140.3 17 bp overlap
GATA2 6 datasets
Motif DE_72h DE_72h-GATA2_MA0036.4 7 bp overlap
ChIP Hep-G2 ENCSR897LDT.GATA2.Hep-G2 322 bp overlap
ChIP HepG2 ENCFF905PYM 371 bp overlap
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 196 bp overlap
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 483 bp overlap
ChIP VCaP GSE125236.GATA2.VCaP 187 bp overlap
GATA3_Nter 1 dataset
ChIP T-47D_CR3flp GSE99479.GATA3_Nter.T-47D_CR3flp 194 bp overlap
GATA4 8 datasets
ChIP DE DE-GATA4-1 497 bp overlap
ChIP DE DE-GATA4-2 565 bp overlap
Motif DE_72h DE_72h-GATA4_MA0482.3 8 bp overlap
ChIP Hep-G2 ENCSR590CNM.GATA4.Hep-G2 167 bp overlap
ChIP YCC-3 GSE51705.GATA4.YCC-3 328 bp overlap
ChIP foregut GSE117136.GATA4.foregut 561 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 459 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 343 bp overlap
GATA5 1 dataset
Motif DE_72h DE_72h-GATA5_MA0766.3 8 bp overlap
GATA6 20 datasets
ChIP Caco-2_DIFF GSE23436.GATA6.Caco-2_DIFF 96 bp overlap
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 287 bp overlap
ChIP DE DE-GATA6-1 428 bp overlap
ChIP DE DE-GATA6-2 606 bp overlap
Motif DE_72h DE_72h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 482 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 487 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 509 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 504 bp overlap
ChIP ESO-26 GSE132680.GATA6.ESO-26 352 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 559 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 542 bp overlap
ChIP PATU8988 GSE47535.GATA6.PATU8988 450 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 342 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 546 bp overlap
ChIP foregut GSE117136.GATA6.foregut 541 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 406 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 259 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 485 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 290 bp overlap
Gata3 1 dataset
Motif DE_72h DE_72h-Gata3_MA0037.5 8 bp overlap
HDAC2 1 dataset
ChIP PC-3 GSE147455.HDAC2.PC-3 142 bp overlap
HNF1B 1 dataset
ChIP foregut GSE117136.HNF1B.foregut 562 bp overlap
HNF4A 4 datasets
ChIP Caco-2_DIFF GSE23436.HNF4A.Caco-2_DIFF 210 bp overlap
ChIP Caco-2_PROLIF GSE23436.HNF4A.Caco-2_PROLIF 197 bp overlap
ChIP IM95 GSE114018.HNF4A.IM95 132 bp overlap
ChIP KATO-III GSE114018.HNF4A.KATO-III 176 bp overlap
HNRNPL 2 datasets
ChIP Hep-G2 ENCSR315JJE.HNRNPL.Hep-G2 251 bp overlap
ChIP Hep-G2 GSE120104.HNRNPL.Hep-G2 306 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 396 bp overlap
JUNB 1 dataset
ChIP CFPAC-1 GSE119930.JUNB.CFPAC-1 226 bp overlap
KAT7 1 dataset
ChIP OCI-AML-3 GSE133516.KAT7.OCI-AML-3 153 bp overlap
KDM1A 2 datasets
ChIP HepG2 ENCFF240UWG 125 bp overlap
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 209 bp overlap
LIN54 2 datasets
ChIP Hep-G2 ENCSR597MCV.LIN54.Hep-G2 445 bp overlap
ChIP HepG2 ENCFF662XDE 581 bp overlap
MED1 6 datasets
ChIP HCT-116_shLuc GSE121798.MED1.HCT-116_shLuc 368 bp overlap
ChIP HCT-116_shLuc_thaps GSE121798.MED1.HCT-116_shLuc_thaps 321 bp overlap
ChIP HCT-116_thaps GSE121798.MED1.HCT-116_thaps 445 bp overlap
ChIP VCaP GSE148358.MED1.VCaP 304 bp overlap
ChIP VCaP_R1881 GSE148358.MED1.VCaP_R1881 172 bp overlap
ChIP VCaP_R1881 GSE148358.MED1.VCaP_R1881 353 bp overlap
MEIS1 1 dataset
Motif DE_72h DE_72h-MEIS1_MA0498.3 5 bp overlap
MEIS2 1 dataset
ChIP HepG2 ENCFF157BEH 411 bp overlap
MYOD1 1 dataset
Motif DE_72h DE_72h-MYOD1_MA0499.3 9 bp overlap
OGG1 1 dataset
ChIP HEK293 GSE89017.OGG1.HEK293 260 bp overlap
PATZ1 1 dataset
ChIP HepG2 ENCFF723PFC 269 bp overlap
PHF21A 1 dataset
ChIP Hep-G2 ENCSR315VYZ.PHF21A.Hep-G2 192 bp overlap
PHIP 2 datasets
ChIP HCT-116_MLL1-KO__ab833 GSE101646.PHIP.HCT-116_MLL1-KO__ab833 135 bp overlap
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 334 bp overlap
POLR2A 8 datasets
ChIP Peyer's patch ENCFF767HVN 308 bp overlap
ChIP Peyer's patch ENCFF767HVN 210 bp overlap
ChIP Peyer's patch ENCFF990IYL 311 bp overlap
ChIP Peyer's patch ENCFF990IYL 105 bp overlap
ChIP transverse colon ENCFF098HBD 194 bp overlap
ChIP transverse colon ENCFF193UMS 606 bp overlap
ChIP transverse colon ENCFF607LKE 172 bp overlap
ChIP transverse colon ENCFF610RWV 322 bp overlap
POU5F1 2 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 354 bp overlap
ChIP SKM-1 GSE93706.POU5F1.SKM-1 187 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 459 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 226 bp overlap
PROX1 1 dataset
ChIP SW480 GSE60390.PROX1.SW480 159 bp overlap
RAD21 1 dataset
ChIP HCT-116 GSE131606.RAD21.HCT-116 256 bp overlap
REST 1 dataset
ChIP PANC-1 ENCSR000BJO.REST.PANC-1 100 bp overlap
RUNX1 1 dataset
ChIP epididymis_HEE GSE109061.RUNX1.epididymis_HEE 197 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 524 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 284 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 323 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 464 bp overlap
SMAD4 2 datasets
ChIP Caco-2 GSE112946.SMAD4.Caco-2 322 bp overlap
ChIP endoderm GSE29422.SMAD4.endoderm 144 bp overlap
SMARCA4 2 datasets
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 98 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 286 bp overlap
SMC1 1 dataset
ChIP DKO GSE131606.SMC1.DKO 192 bp overlap
SNAI2 1 dataset
Motif DE_72h DE_72h-SNAI2_MA0745.3 8 bp overlap
SRSF1 1 dataset
ChIP Hep-G2 GSE120104.SRSF1.Hep-G2 222 bp overlap
SUZ12 1 dataset
ChIP K-562 ENCSR000AUC.SUZ12.K-562 178 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 278 bp overlap
TP53 1 dataset
ChIP IMR-90_APO GSE53491.TP53.IMR-90_APO 132 bp overlap
TRPS1 1 dataset
Motif DE_72h DE_72h-TRPS1_MA1970.2 8 bp overlap
ZBTB48 2 datasets
ChIP U2OS GSE96776.ZBTB48.U2OS 524 bp overlap
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 577 bp overlap
ZBTB7A 1 dataset
ChIP K-562 ENCSR000BME.ZBTB7A.K-562 106 bp overlap
ZBTB7B 1 dataset
ChIP Hep-G2 ENCSR322ULL.ZBTB7B.Hep-G2 308 bp overlap
ZEB1 2 datasets
Motif DE_72h DE_72h-ZEB1_MA0103.4 6 bp overlap
ChIP Hep-G2 ENCSR000BVN.ZEB1.Hep-G2 198 bp overlap
ZFX 1 dataset
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 342 bp overlap
ZNF274 1 dataset
ChIP Hep-G2 ENCSR871VNN.ZNF274.Hep-G2 247 bp overlap
ZNF572 1 dataset
ChIP Hep-G2 ENCSR663CTC.ZNF572.Hep-G2 145 bp overlap
ZNF891 2 datasets
ChIP Hep-G2 ENCSR020CLV.ZNF891.Hep-G2 200 bp overlap
ChIP Hep-G2 ENCSR020CLV.ZNF891.Hep-G2 215 bp overlap
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