chr2 : 55,520,665 – 55,521,015

350 bp 65 TFs 1 linked gene

This 350 bp open chromatin element is linked to CFAP36 and is bound by 65 transcription factors.

Linked Genes

1 gene

Gene	Expression	Dist. to TSS	Distance	Link type
CFAP36		1.1 kb	Proximal	Proximity

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

65 transcription factors

ARID2 1 dataset

ChIP BIN-67_lentivirus-SMARCA4 GSE117734.ARID2.BIN-67_lentivirus-SMARCA4 64 bp overlap

ATF7 1 dataset

ChIP GM12878 ENCSR014YCR.ATF7.GM12878 213 bp overlap

BAF155 1 dataset

ChIP VCaP_shERG GSE110655.BAF155.VCaP_shERG 137 bp overlap

BRD3 1 dataset

ChIP HEK293T GSE39579.BRD3.HEK293T 350 bp overlap

BRD4 3 datasets

ChIP K-562_DMSO GSE99178.BRD4.K-562_DMSO 54 bp overlap

ChIP SUM159PT_DMSO_8h GSE87418.BRD4.SUM159PT_DMSO_8h 191 bp overlap

ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 153 bp overlap

CREB1 3 datasets

ChIP A-549 ENCSR000BRC.CREB1.A-549 97 bp overlap

ChIP MCF-7 ENCFF341ZEM 242 bp overlap

ChIP MCF-7 ENCSR620DUQ.CREB1.MCF-7 171 bp overlap

CRX 1 dataset

ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 169 bp overlap

CTCF 1 dataset

ChIP U-937 ERP008568.CTCF.U-937 178 bp overlap

E2F6 1 dataset

ChIP A549 ENCFF550XVR 155 bp overlap

EBF3_P177L 1 dataset

ChIP SK-N-SH GSE90682.EBF3_P177L.SK-N-SH 143 bp overlap

EHF 1 dataset

ChIP RWPE-1 GSE114241.EHF.RWPE-1 160 bp overlap

ELF3 1 dataset

ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 261 bp overlap

ERG 1 dataset

ChIP VCaP_ETOH GSE49091.ERG.VCaP_ETOH 201 bp overlap

ESR1 2 datasets

ChIP MCF-7_shFbxo_E2_SRC-3 GSE119702.ESR1.MCF-7_shFbxo_E2_SRC-3 126 bp overlap

ChIP MCF-7_shFbxo_SRC-3 GSE119702.ESR1.MCF-7_shFbxo_SRC-3 126 bp overlap

ETS1 1 dataset

ChIP CTV-1_DSG GSE128835.ETS1.CTV-1_DSG 143 bp overlap

EZH2 3 datasets

ChIP OCI-Ly1 GSE45982.EZH2.OCI-Ly1 95 bp overlap

ChIP RCH-ACV GSE135024.EZH2.RCH-ACV 72 bp overlap

ChIP WSU-DLCL2 GSE45982.EZH2.WSU-DLCL2 50 bp overlap

FOS 1 dataset

ChIP HCT-116_A7A GSE152144.FOS.HCT-116_A7A 214 bp overlap

FOXA1 1 dataset

ChIP VCaP_ETOH24H GSE58428.FOXA1.VCaP_ETOH24H 320 bp overlap

FOXA2 1 dataset

ChIP DE DE-FOXA2-1 210 bp overlap

GATA2 1 dataset

ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 184 bp overlap

GATA4 2 datasets

ChIP DE DE-GATA4-1 303 bp overlap

ChIP DE DE-GATA4-2 325 bp overlap

GATA6 2 datasets

ChIP DE DE-GATA6-1 350 bp overlap

ChIP DE DE-GATA6-2 308 bp overlap

HDAC6 1 dataset

ChIP GM12878 ENCSR933EYC.HDAC6.GM12878 84 bp overlap

HOXB13 2 datasets

ChIP G-401 GSE65381.HOXB13.G-401 332 bp overlap

ChIP prostate-cancer_PDX_70 GSE130408.HOXB13.prostate-cancer_PDX_70 75 bp overlap

HOXB8 1 dataset

ChIP CFPAC-1_HOXB8-OE GSE119930.HOXB8.CFPAC-1_HOXB8-OE 86 bp overlap

ID3 1 dataset

ChIP K-562 ENCSR005NMT.ID3.K-562 145 bp overlap

IKZF1 1 dataset

ChIP K-562 ENCSR395HWC.IKZF1.K-562 80 bp overlap

IRF1 1 dataset

ChIP monocyte_notreatment GSE100381.IRF1.monocyte_notreatment 212 bp overlap

IRF2BP2 1 dataset

ChIP HEK293 GSE124636.IRF2BP2.HEK293 159 bp overlap

JMJD1C 1 dataset

ChIP HL-60 GSE63484.JMJD1C.HL-60 159 bp overlap

JUN 1 dataset

ChIP HAEC_TNFa_4h GSE89970.JUN.HAEC_TNFa_4h 134 bp overlap

KAT7 1 dataset

ChIP OCI-AML-3 GSE133516.KAT7.OCI-AML-3 82 bp overlap

KDM1A 1 dataset

ChIP NB4_DMSO GSE128528.KDM1A.NB4_DMSO 150 bp overlap

KMT2A 4 datasets

ChIP HEK293T_C-term_shCtrl_TASP1-KO GSE90762.KMT2A.HEK293T_C-term_shCtrl_TASP1-KO 185 bp overlap

ChIP HEK293T_N-term_shCtrl GSE90762.KMT2A.HEK293T_N-term_shCtrl 266 bp overlap

ChIP KOPN-8 GSE83671.KMT2A.KOPN-8 141 bp overlap

ChIP SEM GSE83671.KMT2A.SEM 149 bp overlap

MEN1 1 dataset

ChIP MCF-7 GSE85317.MEN1.MCF-7 235 bp overlap

MYB 1 dataset

ChIP CD4_Th1 GSE72266.MYB.CD4_Th1 54 bp overlap

NCOR1 1 dataset

ChIP LS180 GSE39277.NCOR1.LS180 93 bp overlap

NKX2-1 1 dataset

ChIP H9_derived-cIN GSE99937.NKX2-1.H9_derived-cIN 158 bp overlap

PITX3 1 dataset

ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 350 bp overlap

PPARG 1 dataset

ChIP HUVEC-C_DMSO_HYPO GSE50144.PPARG.HUVEC-C_DMSO_HYPO 102 bp overlap

RBBP5 1 dataset

ChIP K-562 ENCSR000AQI.RBBP5.K-562 140 bp overlap

RELA 1 dataset

ChIP aortic-endothelial-cell_IL1B_D26 GSE139377.RELA.aortic-endothelial-cell_IL1B_D26 256 bp overlap

REST 1 dataset

ChIP HL-60 ENCFF589LOF 120 bp overlap

RORB 1 dataset

ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 195 bp overlap

RUNX1 1 dataset

ChIP NB4 GSE81992.RUNX1.NB4 123 bp overlap

RUNX1T1 1 dataset

ChIP Kasumi-1_CEBPA-ER GSE102697.RUNX1T1.Kasumi-1_CEBPA-ER 161 bp overlap

SMARCA4 5 datasets

ChIP A-549_AG15684 GSE132290.SMARCA4.A-549_AG15684 313 bp overlap

ChIP A-549_AG15685 GSE132290.SMARCA4.A-549_AG15685 350 bp overlap

ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 280 bp overlap

ChIP CTV-1_DSG GSE128835.SMARCA4.CTV-1_DSG 227 bp overlap

ChIP TTC-1240_delC GSE124903.SMARCA4.TTC-1240_delC 239 bp overlap

SMARCB1 1 dataset

ChIP MCF-7_DCDT GSE123284.SMARCB1.MCF-7_DCDT 162 bp overlap

SMC3 2 datasets

ChIP GP5D GSE51234.SMC3.GP5D 56 bp overlap

ChIP neural ENCSR404BPV.SMC3.neural 173 bp overlap

SNAI2 1 dataset

ChIP SMS-CTR_D48 GSE137168.SNAI2.SMS-CTR_D48 269 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 349 bp overlap

SP140L 1 dataset

ChIP Hep-G2 ENCSR107DKT.SP140L.Hep-G2 123 bp overlap

SPI1 3 datasets

ChIP CTV-1_FLAG_15perc GSE128835.SPI1.CTV-1_FLAG_15perc 59 bp overlap

ChIP CTV-1_delQ GSE128835.SPI1.CTV-1_delQ 115 bp overlap

ChIP Kasumi-1_SICTR GSE60130.SPI1.Kasumi-1_SICTR 102 bp overlap

TBP 1 dataset

ChIP HeLa-S3 ENCFF715NNJ 257 bp overlap

TCF3 1 dataset

ChIP Kasumi-1 GSE43834.TCF3.Kasumi-1 281 bp overlap

TERF1 1 dataset

ChIP LCL GSE55053.TERF1.LCL 171 bp overlap

ZBTB17 1 dataset

ChIP HEK293 ENCFF865LIO 350 bp overlap

ZBTB40 1 dataset

ChIP K-562 ENCSR237VLT.ZBTB40.K-562 190 bp overlap

ZNF101 1 dataset

ChIP HEK293 ENCSR462FWS.ZNF101.HEK293 153 bp overlap

ZNF335 1 dataset

ChIP HEK293 ENCFF784SLD 248 bp overlap

ZNF528 1 dataset

ChIP HEK293 GSE76494.ZNF528.HEK293 216 bp overlap

ZNF534 1 dataset

ChIP HEK293T GSE78099.ZNF534.HEK293T 288 bp overlap

ZNF569 1 dataset

ChIP HepG2 ENCFF594IPO 66 bp overlap

ZNF629 1 dataset

ChIP HEK293 ENCSR351NON.ZNF629.HEK293 235 bp overlap

ZNF660 1 dataset

ChIP HEK293 ENCSR283DOU.ZNF660.HEK293 186 bp overlap