chr2 : 50,988,454 – 50,988,972
518 bp 84 TFs 0 linked genes
This 518 bp open chromatin element has no linked target genes and is bound by 84 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:50,983,454 – 50,993,972
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
84 transcription factors
Source
Cell type
ASCL1 6 datasets
Motif DE_36h DE_36h-ASCL1_MA1100.3 8 bp overlap
Motif DE_36h DE_36h-ASCL1_MA1631.2 9 bp overlap
Motif DE_48h DE_48h-ASCL1_MA1100.3 8 bp overlap
Motif DE_48h DE_48h-ASCL1_MA1631.2 9 bp overlap
Motif DE_60h DE_60h-ASCL1_MA1100.3 8 bp overlap
Motif DE_60h DE_60h-ASCL1_MA1631.2 9 bp overlap
ATOH7 2 datasets
Motif DE_48h DE_48h-ATOH7_MA1468.1 10 bp overlap
Motif DE_60h DE_60h-ATOH7_MA1468.1 10 bp overlap
Ascl2 3 datasets
Motif DE_36h DE_36h-Ascl2_MA0816.1 10 bp overlap
Motif DE_48h DE_48h-Ascl2_MA0816.1 10 bp overlap
Motif DE_60h DE_60h-Ascl2_MA0816.1 10 bp overlap
BHLHE22 3 datasets
Motif DE_36h DE_36h-BHLHE22_MA1635.2 6 bp overlap
Motif DE_48h DE_48h-BHLHE22_MA1635.2 6 bp overlap
Motif DE_60h DE_60h-BHLHE22_MA1635.2 6 bp overlap
BRD4 1 dataset
ChIP VCaP_R1881 GSE148358.BRD4.VCaP_R1881 192 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 179 bp overlap
ERF::HOXB13 2 datasets
Motif DE_48h DE_48h-ERFHOXB13_MA1937.2 13 bp overlap
Motif DE_60h DE_60h-ERFHOXB13_MA1937.2 13 bp overlap
ESR1 1 dataset
Motif DE_60h DE_60h-ESR1_MA0112.4 15 bp overlap
ESR2 1 dataset
Motif DE_60h DE_60h-ESR2_MA0258.2 15 bp overlap
ESRRA 1 dataset
Motif DE_60h DE_60h-ESRRA_MA0592.4 9 bp overlap
ETV5::DRGX 2 datasets
Motif DE_48h DE_48h-ETV5DRGX_MA1944.2 12 bp overlap
Motif DE_60h DE_60h-ETV5DRGX_MA1944.2 12 bp overlap
ETV5::FIGLA 4 datasets
Motif DE_36h DE_36h-ETV5FIGLA_MA1945.2 14 bp overlap
Motif DE_48h DE_48h-ETV5FIGLA_MA1945.2 14 bp overlap
Motif DE_60h DE_60h-ETV5FIGLA_MA1945.2 14 bp overlap
Motif DE_72h DE_72h-ETV5FIGLA_MA1945.2 14 bp overlap
ETV5::FOXO1 2 datasets
Motif DE_48h DE_48h-ETV5FOXO1_MA1947.2 10 bp overlap
Motif DE_60h DE_60h-ETV5FOXO1_MA1947.2 10 bp overlap
Elf5 2 datasets
Motif DE_48h DE_48h-Elf5_MA0136.4 8 bp overlap
Motif DE_60h DE_60h-Elf5_MA0136.4 8 bp overlap
Esrrg 1 dataset
Motif DE_60h DE_60h-Esrrg_MA0643.2 9 bp overlap
FLI1::FOXI1 2 datasets
Motif DE_48h DE_48h-FLI1FOXI1_MA1950.2 11 bp overlap
Motif DE_60h DE_60h-FLI1FOXI1_MA1950.2 11 bp overlap
FOXA2 5 datasets
ChIP DE DE-FOXA2-1 495 bp overlap
ChIP DE DE-FOXA2-2 473 bp overlap
Motif DE_36h DE_36h-FOXA2_MA0047.4 8 bp overlap
Motif DE_48h DE_48h-FOXA2_MA0047.4 8 bp overlap
Motif DE_60h DE_60h-FOXA2_MA0047.4 8 bp overlap
FOXA3 3 datasets
Motif DE_36h DE_36h-FOXA3_MA1683.2 7 bp overlap
Motif DE_48h DE_48h-FOXA3_MA1683.2 7 bp overlap
Motif DE_60h DE_60h-FOXA3_MA1683.2 7 bp overlap
FOXE1 2 datasets
Motif DE_48h DE_48h-FOXE1_MA1487.3 12 bp overlap
Motif DE_60h DE_60h-FOXE1_MA1487.3 12 bp overlap
FOXF2 3 datasets
Motif DE_36h DE_36h-FOXF2_MA0030.2 9 bp overlap
Motif DE_48h DE_48h-FOXF2_MA0030.2 9 bp overlap
Motif DE_60h DE_60h-FOXF2_MA0030.2 9 bp overlap
FOXI1 3 datasets
Motif DE_36h DE_36h-FOXI1_MA0042.2 7 bp overlap
Motif DE_48h DE_48h-FOXI1_MA0042.2 7 bp overlap
Motif DE_60h DE_60h-FOXI1_MA0042.2 7 bp overlap
FOXP1 3 datasets
Motif DE_36h DE_36h-FOXP1_MA0481.4 7 bp overlap
Motif DE_48h DE_48h-FOXP1_MA0481.4 7 bp overlap
Motif DE_60h DE_60h-FOXP1_MA0481.4 7 bp overlap
FOXP4 3 datasets
Motif DE_36h DE_36h-FOXP4_MA2117.1 7 bp overlap
Motif DE_48h DE_48h-FOXP4_MA2117.1 7 bp overlap
Motif DE_60h DE_60h-FOXP4_MA2117.1 7 bp overlap
Foxl2 2 datasets
Motif DE_48h DE_48h-Foxl2_MA1607.2 10 bp overlap
Motif DE_60h DE_60h-Foxl2_MA1607.2 10 bp overlap
GATA1::TAL1 2 datasets
Motif DE_48h DE_48h-GATA1TAL1_MA0140.3 17 bp overlap
Motif DE_60h DE_60h-GATA1TAL1_MA0140.3 17 bp overlap
GATA2 3 datasets
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 260 bp overlap
ChIP SK-N-SH ENCFF764OZD 411 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 224 bp overlap
GATA3 1 dataset
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 374 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 495 bp overlap
ChIP DE DE-GATA4-2 518 bp overlap
GATA6 12 datasets
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 111 bp overlap
ChIP DE DE-GATA6-1 466 bp overlap
ChIP DE DE-GATA6-2 496 bp overlap
Motif DE_36h DE_36h-GATA6_MA1104.3 8 bp overlap
Motif DE_48h DE_48h-GATA6_MA1104.3 8 bp overlap
Motif DE_60h DE_60h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 308 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 307 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 421 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 349 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 361 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 372 bp overlap
GFI1 2 datasets
Motif DE_48h DE_48h-GFI1_MA0038.3 11 bp overlap
Motif DE_60h DE_60h-GFI1_MA0038.3 11 bp overlap
Gata3 3 datasets
Motif DE_36h DE_36h-Gata3_MA0037.5 8 bp overlap
Motif DE_48h DE_48h-Gata3_MA0037.5 8 bp overlap
Motif DE_60h DE_60h-Gata3_MA0037.5 8 bp overlap
Gfi1B 2 datasets
Motif DE_48h DE_48h-Gfi1B_MA0483.2 10 bp overlap
Motif DE_60h DE_60h-Gfi1B_MA0483.2 10 bp overlap
HOXD12::ELK1 2 datasets
Motif DE_48h DE_48h-HOXD12ELK1_MA1958.2 13 bp overlap
Motif DE_60h DE_60h-HOXD12ELK1_MA1958.2 13 bp overlap
IKZF2 2 datasets
Motif DE_48h DE_48h-IKZF2_MA2326.1 6 bp overlap
Motif DE_60h DE_60h-IKZF2_MA2326.1 6 bp overlap
JUNB 3 datasets
Motif DE_36h DE_36h-JUNB_MA0490.3 9 bp overlap
Motif DE_48h DE_48h-JUNB_MA0490.3 9 bp overlap
Motif DE_60h DE_60h-JUNB_MA0490.3 9 bp overlap
JUND 3 datasets
Motif DE_36h DE_36h-JUND_MA0491.3 9 bp overlap
Motif DE_48h DE_48h-JUND_MA0491.3 9 bp overlap
Motif DE_60h DE_60h-JUND_MA0491.3 9 bp overlap
LIN54 2 datasets
Motif DE_48h DE_48h-LIN54_MA0619.2 7 bp overlap
Motif DE_60h DE_60h-LIN54_MA0619.2 7 bp overlap
MAX::MYC 2 datasets
Motif DE_48h DE_48h-MAXMYC_MA0059.2 10 bp overlap
Motif DE_60h DE_60h-MAXMYC_MA0059.2 10 bp overlap
MEIS1 1 dataset
Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap
MEIS3 1 dataset
Motif DE_60h DE_60h-MEIS3_MA0775.2 7 bp overlap
MSC 5 datasets
Motif DE_36h DE_36h-MSC_MA0665.1 10 bp overlap
Motif DE_48h DE_48h-MSC_MA0665.1 10 bp overlap
Motif DE_48h DE_48h-MSC_MA0665.1 10 bp overlap
Motif DE_60h DE_60h-MSC_MA0665.1 10 bp overlap
Motif DE_60h DE_60h-MSC_MA0665.1 10 bp overlap
MXI1 2 datasets
Motif DE_48h DE_48h-MXI1_MA1108.3 6 bp overlap
Motif DE_60h DE_60h-MXI1_MA1108.3 6 bp overlap
MYOG 3 datasets
Motif DE_36h DE_36h-MYOG_MA0500.3 8 bp overlap
Motif DE_48h DE_48h-MYOG_MA0500.3 8 bp overlap
Motif DE_60h DE_60h-MYOG_MA0500.3 8 bp overlap
MZF1 2 datasets
Motif DE_48h DE_48h-MZF1_MA0056.3 8 bp overlap
Motif DE_60h DE_60h-MZF1_MA0056.3 8 bp overlap
Mecom 3 datasets
Motif DE_36h DE_36h-Mecom_MA0029.2 11 bp overlap
Motif DE_48h DE_48h-Mecom_MA0029.2 11 bp overlap
Motif DE_60h DE_60h-Mecom_MA0029.2 11 bp overlap
Msgn1 2 datasets
Motif DE_48h DE_48h-Msgn1_MA1524.3 10 bp overlap
Motif DE_60h DE_60h-Msgn1_MA1524.3 10 bp overlap
NEUROG1 2 datasets
Motif DE_48h DE_48h-NEUROG1_MA0623.2 10 bp overlap
Motif DE_60h DE_60h-NEUROG1_MA0623.2 10 bp overlap
NFE2 3 datasets
Motif DE_36h DE_36h-NFE2_MA0841.2 10 bp overlap
Motif DE_48h DE_48h-NFE2_MA0841.2 10 bp overlap
Motif DE_60h DE_60h-NFE2_MA0841.2 10 bp overlap
NHLH1 3 datasets
Motif DE_36h DE_36h-NHLH1_MA0048.3 9 bp overlap
Motif DE_48h DE_48h-NHLH1_MA0048.3 9 bp overlap
Motif DE_60h DE_60h-NHLH1_MA0048.3 9 bp overlap
NHLH2 3 datasets
Motif DE_36h DE_36h-NHLH2_MA1529.2 16 bp overlap
Motif DE_48h DE_48h-NHLH2_MA1529.2 16 bp overlap
Motif DE_60h DE_60h-NHLH2_MA1529.2 16 bp overlap
NR6A1 1 dataset
Motif DE_60h DE_60h-NR6A1_MA1541.2 14 bp overlap
Neurod2 3 datasets
Motif DE_36h DE_36h-Neurod2_MA1993.2 6 bp overlap
Motif DE_48h DE_48h-Neurod2_MA1993.2 6 bp overlap
Motif DE_60h DE_60h-Neurod2_MA1993.2 6 bp overlap
Nr2e3 1 dataset
Motif DE_48h DE_48h-Nr2e3_MA0164.2 6 bp overlap
Nr5A2 1 dataset
Motif DE_60h DE_60h-Nr5A2_MA0505.3 9 bp overlap
ONECUT1 2 datasets
Motif DE_48h DE_48h-ONECUT1_MA0679.3 9 bp overlap
Motif DE_60h DE_60h-ONECUT1_MA0679.3 9 bp overlap
ONECUT3 2 datasets
Motif DE_48h DE_48h-ONECUT3_MA0757.2 12 bp overlap
Motif DE_60h DE_60h-ONECUT3_MA0757.2 12 bp overlap
Olig2 3 datasets
Motif DE_36h DE_36h-Olig2_MA1997.2 6 bp overlap
Motif DE_48h DE_48h-Olig2_MA1997.2 6 bp overlap
Motif DE_60h DE_60h-Olig2_MA1997.2 6 bp overlap
PAX6 1 dataset
Motif DE_60h DE_60h-PAX6_MA0069.1 14 bp overlap
PPARA::RXRA 2 datasets
Motif DE_48h DE_48h-PPARARXRA_MA1148.2 17 bp overlap
Motif DE_60h DE_60h-PPARARXRA_MA1148.2 17 bp overlap
PPARG 1 dataset
Motif DE_60h DE_60h-PPARG_MA0066.2 19 bp overlap
Rhox11 2 datasets
Motif DE_48h DE_48h-Rhox11_MA0629.2 9 bp overlap
Motif DE_60h DE_60h-Rhox11_MA0629.2 9 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 390 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 156 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 353 bp overlap
Six3 2 datasets
Motif DE_48h DE_48h-Six3_MA0631.2 11 bp overlap
Motif DE_60h DE_60h-Six3_MA0631.2 11 bp overlap
Spi1 2 datasets
Motif DE_48h DE_48h-Spi1_MA0080.7 13 bp overlap
Motif DE_60h DE_60h-Spi1_MA0080.7 13 bp overlap
Spz1 2 datasets
Motif DE_48h DE_48h-Spz1_MA0111.1 11 bp overlap
Motif DE_60h DE_60h-Spz1_MA0111.1 11 bp overlap
TCF21 2 datasets
Motif DE_48h DE_48h-TCF21_MA1568.2 10 bp overlap
Motif DE_60h DE_60h-TCF21_MA1568.2 10 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 271 bp overlap
TFAP4 2 datasets
Motif DE_48h DE_48h-TFAP4_MA1570.1 10 bp overlap
Motif DE_60h DE_60h-TFAP4_MA1570.1 10 bp overlap
TFAP4::FLI1 4 datasets
Motif DE_36h DE_36h-TFAP4FLI1_MA1967.2 14 bp overlap
Motif DE_48h DE_48h-TFAP4FLI1_MA1967.2 14 bp overlap
Motif DE_60h DE_60h-TFAP4FLI1_MA1967.2 14 bp overlap
Motif DE_72h DE_72h-TFAP4FLI1_MA1967.2 14 bp overlap
TRPS1 3 datasets
Motif DE_36h DE_36h-TRPS1_MA1970.2 8 bp overlap
Motif DE_48h DE_48h-TRPS1_MA1970.2 8 bp overlap
Motif DE_60h DE_60h-TRPS1_MA1970.2 8 bp overlap
Tcf12 3 datasets
Motif DE_36h DE_36h-Tcf12_MA0521.3 6 bp overlap
Motif DE_48h DE_48h-Tcf12_MA0521.3 6 bp overlap
Motif DE_60h DE_60h-Tcf12_MA0521.3 6 bp overlap
Twist2 3 datasets
Motif DE_36h DE_36h-Twist2_MA0633.3 6 bp overlap
Motif DE_48h DE_48h-Twist2_MA0633.3 6 bp overlap
Motif DE_60h DE_60h-Twist2_MA0633.3 6 bp overlap
ZKSCAN3 1 dataset
Motif DE_60h DE_60h-ZKSCAN3_MA1973.2 14 bp overlap
ZNF148 2 datasets
Motif DE_48h DE_48h-ZNF148_MA1653.2 10 bp overlap
Motif DE_60h DE_60h-ZNF148_MA1653.2 10 bp overlap
ZNF35 3 datasets
Motif DE_36h DE_36h-ZNF35_MA2333.1 7 bp overlap
Motif DE_48h DE_48h-ZNF35_MA2333.1 7 bp overlap
Motif DE_60h DE_60h-ZNF35_MA2333.1 7 bp overlap
ZNF382 3 datasets
Motif DE_36h DE_36h-ZNF382_MA1594.1 24 bp overlap
Motif DE_48h DE_48h-ZNF382_MA1594.1 24 bp overlap
Motif DE_60h DE_60h-ZNF382_MA1594.1 24 bp overlap
ZNF530 2 datasets
Motif DE_48h DE_48h-ZNF530_MA1981.2 14 bp overlap
Motif DE_60h DE_60h-ZNF530_MA1981.2 14 bp overlap
ZNF707 2 datasets
Motif DE_48h DE_48h-ZNF707_MA1715.1 15 bp overlap
Motif DE_60h DE_60h-ZNF707_MA1715.1 15 bp overlap
ZNF708 2 datasets
Motif DE_36h DE_36h-ZNF708_MA1730.2 9 bp overlap
Motif DE_48h DE_48h-ZNF708_MA1730.2 9 bp overlap
ZNF8 2 datasets
Motif DE_48h DE_48h-ZNF8_MA1718.1 20 bp overlap
Motif DE_60h DE_60h-ZNF8_MA1718.1 20 bp overlap
ZNF93 4 datasets
Motif DE_36h DE_36h-ZNF93_MA1721.2 14 bp overlap
Motif DE_48h DE_48h-ZNF93_MA1721.2 14 bp overlap
Motif DE_60h DE_60h-ZNF93_MA1721.2 14 bp overlap
Motif DE_72h DE_72h-ZNF93_MA1721.2 14 bp overlap
Znf423 2 datasets
Motif DE_48h DE_48h-Znf423_MA0116.1 15 bp overlap
Motif DE_60h DE_60h-Znf423_MA0116.1 15 bp overlap
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