chrX : 137,747,306 137,747,843
537 bp 88 TFs 0 linked genes
This 537 bp open chromatin element has no linked target genes and is bound by 88 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chrX:137,742,306 – 137,752,843
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
88 transcription factors
Source
Cell type
ASCL1 2 datasets
Motif ES_0h ES_0h-ASCL1_MA1631.2 9 bp overlap
ChIP NCI-H82 GSE69394.ASCL1.NCI-H82 86 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 450 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 210 bp overlap
BARX1 1 dataset
Motif DE_24h DE_24h-BARX1_MA0875.2 6 bp overlap
BCL11A 2 datasets
ChIP WA01 ENCSR000BMJ.BCL11A.WA01 119 bp overlap
ChIP WA01 ENCSR000BIP.BCL11A.WA01 115 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 423 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 295 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 260 bp overlap
BRD4 1 dataset
ChIP hESC GSE33281.BRD4.hESC 61 bp overlap
BSX 1 dataset
Motif DE_24h DE_24h-BSX_MA0876.2 6 bp overlap
CHD7 2 datasets
ChIP hiPSC_AF22_abD3F5 GSE108506.CHD7.hiPSC_AF22_abD3F5 224 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 388 bp overlap
CREB1 1 dataset
ChIP WA01 ENCSR000BSN.CREB1.WA01 132 bp overlap
CTCF 6 datasets
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 81 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 136 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 92 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 140 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 228 bp overlap
ChIP neural progenitor cell ENCFF581WPG 509 bp overlap
CTNNB1 2 datasets
ChIP hESC_YAP-_activinA_15h GSE99202.CTNNB1.hESC_YAP-_activinA_15h 253 bp overlap
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 200 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF262VBH 331 bp overlap
DLX1 1 dataset
Motif DE_24h DE_24h-DLX1_MA0879.3 6 bp overlap
DLX6 1 dataset
Motif DE_24h DE_24h-DLX6_MA0882.2 6 bp overlap
Dlx2 1 dataset
Motif DE_24h DE_24h-Dlx2_MA0885.3 8 bp overlap
Dlx3 1 dataset
Motif DE_24h DE_24h-Dlx3_MA0880.2 6 bp overlap
Dlx4 1 dataset
Motif DE_24h DE_24h-Dlx4_MA0881.2 6 bp overlap
Dlx5 1 dataset
Motif DE_24h DE_24h-Dlx5_MA1476.3 8 bp overlap
EOMES 2 datasets
ChIP hESC GSE26097.EOMES.hESC 247 bp overlap
ChIP hESC GSE26097.EOMES.hESC 194 bp overlap
EP300 3 datasets
ChIP H1 ENCFF927IYK 247 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 162 bp overlap
ChIP hESC GSE17917.EP300.hESC 109 bp overlap
FIGLA 1 dataset
Motif ES_0h ES_0h-FIGLA_MA0820.2 6 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 537 bp overlap
ChIP DE DE-FOXA2-2 537 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 201 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 209 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 488 bp overlap
ChIP DE DE-GATA4-2 455 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-1 410 bp overlap
ChIP DE DE-GATA6-2 537 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 431 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 537 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 537 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 287 bp overlap
GBX2 1 dataset
Motif DE_24h DE_24h-GBX2_MA0890.2 6 bp overlap
HDAC2 2 datasets
ChIP WA01 ENCSR000BNR.HDAC2.WA01 123 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 152 bp overlap
HESX1 1 dataset
Motif DE_24h DE_24h-HESX1_MA0894.2 6 bp overlap
HOXA7 1 dataset
Motif DE_24h DE_24h-HOXA7_MA1498.3 6 bp overlap
HSF1 2 datasets
Motif DE_12h DE_12h-HSF1_MA0486.2 13 bp overlap
Motif ES_0h ES_0h-HSF1_MA0486.2 13 bp overlap
HSF2 2 datasets
Motif DE_12h DE_12h-HSF2_MA0770.1 13 bp overlap
Motif ES_0h ES_0h-HSF2_MA0770.1 13 bp overlap
HSF4 2 datasets
Motif DE_12h DE_12h-HSF4_MA0771.1 13 bp overlap
Motif ES_0h ES_0h-HSF4_MA0771.1 13 bp overlap
JUN 11 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 210 bp overlap
ChIP DE_D1 S08-DE-d1-JUN-exp1 107 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 184 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 130 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 182 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 277 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 256 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 288 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 371 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 263 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 175 bp overlap
LBX2 1 dataset
Motif DE_24h DE_24h-LBX2_MA0699.2 6 bp overlap
LEF1 2 datasets
ChIP hESC GSE64758.LEF1.hESC 261 bp overlap
ChIP hESC_WNT3A GSE64758.LEF1.hESC_WNT3A 208 bp overlap
LHX2 1 dataset
Motif DE_24h DE_24h-LHX2_MA0700.3 6 bp overlap
MED1 1 dataset
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 412 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 209 bp overlap
MSX1 1 dataset
Motif DE_24h DE_24h-MSX1_MA0666.3 6 bp overlap
MSX2 1 dataset
Motif DE_24h DE_24h-MSX2_MA0708.3 6 bp overlap
Msx3 1 dataset
Motif DE_24h DE_24h-Msx3_MA0709.2 6 bp overlap
NANOG 11 datasets
ChIP GM23338 ENCFF065NZG 259 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 233 bp overlap
ChIP H1 ENCFF747ZPQ 90 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 527 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 438 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 256 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 537 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 495 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 343 bp overlap
ChIP hESC GSE18292.NANOG.hESC 159 bp overlap
ChIP hESC GSE20650.NANOG.hESC 272 bp overlap
NEUROD1 1 dataset
ChIP D283-Med GSE92582.NEUROD1.D283-Med 174 bp overlap
NIPBL 2 datasets
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 247 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 205 bp overlap
Nobox 1 dataset
Motif DE_24h DE_24h-Nobox_MA0125.2 6 bp overlap
Nr5A2 1 dataset
Motif ES_0h ES_0h-Nr5A2_MA0505.3 9 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 537 bp overlap
POU5F1 7 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 357 bp overlap
ChIP GM23338 ENCFF333SNB 265 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 473 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 453 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 158 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 351 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 214 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 118 bp overlap
PRDM1 2 datasets
Motif DE_12h DE_12h-PRDM1_MA0508.4 7 bp overlap
Motif ES_0h ES_0h-PRDM1_MA0508.4 7 bp overlap
RAD21 1 dataset
ChIP H1 ENCFF698EWO 241 bp overlap
RARA 2 datasets
ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 289 bp overlap
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 380 bp overlap
RARA::RXRA 2 datasets
Motif DE_12h DE_12h-RARARXRA_MA0159.1 17 bp overlap
Motif ES_0h ES_0h-RARARXRA_MA0159.1 17 bp overlap
RAX 1 dataset
Motif DE_24h DE_24h-RAX_MA0718.2 6 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 179 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 401 bp overlap
SCRT1 1 dataset
Motif ES_0h ES_0h-SCRT1_MA0743.3 10 bp overlap
SCRT2 1 dataset
Motif ES_0h ES_0h-SCRT2_MA0744.3 10 bp overlap
SIN3A 5 datasets
ChIP H1 ENCFF042ZSL 416 bp overlap
ChIP H1 ENCFF896IJG 287 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 176 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 269 bp overlap
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 207 bp overlap
SMAD2 1 dataset
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 224 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 537 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 537 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 537 bp overlap
SMAD2_3 6 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 447 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 537 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 537 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 109 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 120 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 342 bp overlap
SMAD3 5 datasets
ChIP BG03 GSE36578.SMAD3.BG03 84 bp overlap
ChIP BG03_DIFF_0H GSE36578.SMAD3.BG03_DIFF_0H 201 bp overlap
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 227 bp overlap
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 136 bp overlap
ChIP endoderm GSE29422.SMAD3.endoderm 172 bp overlap
SMARCA4 2 datasets
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 285 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 526 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 537 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 203 bp overlap
SMARCC1 3 datasets
ChIP ESC S25-ESC-d0-BAF155-exp1 251 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 537 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 183 bp overlap
SNAI1 1 dataset
Motif ES_0h ES_0h-SNAI1_MA1558.2 7 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 379 bp overlap
SOX2 2 datasets
ChIP HNSC GSE69479.SOX2.HNSC 537 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 271 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 140 bp overlap
SREBF1 1 dataset
Motif ES_0h ES_0h-SREBF1_MA0829.3 10 bp overlap
SUZ12 1 dataset
ChIP HEK293T_PCGF2fl_OHT GSE119618.SUZ12.HEK293T_PCGF2fl_OHT 295 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 537 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 537 bp overlap
TCF12 2 datasets
Motif ES_0h ES_0h-TCF12_MA1648.2 7 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 166 bp overlap
TCF3 1 dataset
Motif ES_0h ES_0h-TCF3_MA0522.4 7 bp overlap
USF1 1 dataset
ChIP WA01 ENCSR000BIU.USF1.WA01 195 bp overlap
VEZF1 1 dataset
Motif DE_24h DE_24h-VEZF1_MA1578.2 6 bp overlap
Vdr 1 dataset
Motif DE_24h DE_24h-Vdr_MA0693.4 7 bp overlap
ZEB1 1 dataset
Motif ES_0h ES_0h-ZEB1_MA0103.4 6 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 246 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 235 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 158 bp overlap
ZNF816 1 dataset
Motif DE_24h DE_24h-ZNF816_MA1719.2 15 bp overlap
Zfx 1 dataset
Motif ES_0h ES_0h-Zfx_MA0146.3 10 bp overlap
Zic2 1 dataset
Motif ES_0h ES_0h-Zic2_MA1629.2 9 bp overlap
Zic3 1 dataset
Motif ES_0h ES_0h-Zic3_MA0697.3 7 bp overlap