chrX : 112,081,697 112,082,536
839 bp 76 TFs 2 linked genes
This 839 bp open chromatin element is linked to TRPC5 and RTL4 and is bound by 76 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
TRPC5 239 bp At TSS Proximity
RTL4 478 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chrX:112,076,697 – 112,087,536
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
76 transcription factors
Source
Cell type
BCOR 2 datasets
ChIP WA01 GSE104690.BCOR.WA01 674 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 790 bp overlap
BRD1 2 datasets
ChIP HUES-64 GSE104059.BRD1.HUES-64 245 bp overlap
ChIP HUES-64 GSE104059.BRD1.HUES-64 450 bp overlap
BRD4 2 datasets
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 277 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 251 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 482 bp overlap
E2F4 1 dataset
Motif DE_12h DE_12h-E2F4_MA0470.3 13 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 118 bp overlap
E2F7 1 dataset
Motif DE_12h DE_12h-E2F7_MA0758.1 14 bp overlap
EGR1 1 dataset
Motif DE_12h DE_12h-EGR1_MA0162.5 10 bp overlap
EGR3 1 dataset
Motif DE_12h DE_12h-EGR3_MA0732.2 11 bp overlap
EGR4 1 dataset
Motif DE_12h DE_12h-EGR4_MA0733.2 11 bp overlap
EP300 2 datasets
ChIP neural ENCSR843ZUP.EP300.neural 267 bp overlap
ChIP osteoblast ENCSR000AUD.EP300.osteoblast 302 bp overlap
EZH2 19 datasets
ChIP A-673 ENCSR179SAO.EZH2.A-673 240 bp overlap
ChIP A-673 ENCSR179SAO.EZH2.A-673 459 bp overlap
ChIP GM23338 ENCSR045YHA.EZH2.GM23338 362 bp overlap
ChIP H1 ENCFF232NZA 597 bp overlap
ChIP H1 ENCFF232NZA 388 bp overlap
ChIP WA01 ENCSR000ASY.EZH2.WA01 418 bp overlap
ChIP WA01 ENCSR000ASY.EZH2.WA01 308 bp overlap
ChIP astrocyte ENCSR000ARR.EZH2.astrocyte 282 bp overlap
ChIP dermal-fibroblast_Untransformed GSE126396.EZH2.dermal-fibroblast_Untransformed 308 bp overlap
ChIP fibroblast of lung ENCFF479BAW 475 bp overlap
ChIP fibroblast of lung ENCFF479BAW 276 bp overlap
ChIP fibroblast_LUNG ENCSR000ARO.EZH2.fibroblast_LUNG 195 bp overlap
ChIP hepatocyte ENCFF118DKH 156 bp overlap
ChIP hepatocyte ENCFF552DZB 338 bp overlap
ChIP hepatocyte ENCFF552DZB 133 bp overlap
ChIP keratinocyte ENCSR000ARK.EZH2.keratinocyte 337 bp overlap
ChIP neural progenitor cell ENCFF018MKA 71 bp overlap
ChIP neural progenitor cell ENCFF472NFV 458 bp overlap
ChIP neural progenitor cell ENCFF472NFV 464 bp overlap
GLI3 1 dataset
Motif DE_12h DE_12h-GLI3_MA1491.3 15 bp overlap
Gfi1B 1 dataset
Motif DE_12h DE_12h-Gfi1B_MA0483.2 10 bp overlap
Gli1 1 dataset
Motif DE_12h DE_12h-Gli1_MA1990.2 10 bp overlap
Gli2 1 dataset
Motif DE_12h DE_12h-Gli2_MA0734.4 9 bp overlap
JARID2 7 datasets
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 471 bp overlap
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 839 bp overlap
ChIP UTEIPS11 GSE48516.JARID2.UTEIPS11 284 bp overlap
ChIP UTEIPS11 GSE48516.JARID2.UTEIPS11 239 bp overlap
ChIP UTEIPS6 GSE48516.JARID2.UTEIPS6 262 bp overlap
ChIP UTEIPS6 GSE48516.JARID2.UTEIPS6 235 bp overlap
ChIP UTEIPS7 GSE48516.JARID2.UTEIPS7 336 bp overlap
KDM4A 2 datasets
ChIP H1 ENCFF078LED 301 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 480 bp overlap
KLF1 1 dataset
Motif DE_12h DE_12h-KLF1_MA0493.3 8 bp overlap
KLF10 1 dataset
Motif DE_12h DE_12h-KLF10_MA1511.2 9 bp overlap
KLF11 1 dataset
Motif DE_12h DE_12h-KLF11_MA1512.2 10 bp overlap
KLF12 1 dataset
Motif DE_12h DE_12h-KLF12_MA0742.2 9 bp overlap
KLF14 1 dataset
Motif DE_12h DE_12h-KLF14_MA0740.2 9 bp overlap
KLF15 1 dataset
Motif DE_12h DE_12h-KLF15_MA1513.2 8 bp overlap
KLF16 1 dataset
Motif DE_12h DE_12h-KLF16_MA0741.1 11 bp overlap
KLF17 1 dataset
Motif DE_12h DE_12h-KLF17_MA1514.2 14 bp overlap
KLF2 1 dataset
Motif DE_12h DE_12h-KLF2_MA1515.2 8 bp overlap
KLF4 1 dataset
Motif DE_12h DE_12h-KLF4_MA0039.5 8 bp overlap
KLF5 1 dataset
Motif DE_12h DE_12h-KLF5_MA0599.1 10 bp overlap
KLF7 1 dataset
Motif DE_12h DE_12h-KLF7_MA1959.2 8 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 106 bp overlap
MAX 1 dataset
ChIP WTC11 ENCFF223QFY 528 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 230 bp overlap
OGG1 1 dataset
ChIP HEK293 GSE89017.OGG1.HEK293 337 bp overlap
PATZ1 1 dataset
Motif DE_12h DE_12h-PATZ1_MA1961.2 11 bp overlap
PCGF2 1 dataset
ChIP NT2-D1 GSE101538.PCGF2.NT2-D1 156 bp overlap
POU5F1 2 datasets
ChIP BG03 GSE21614.POU5F1.BG03 157 bp overlap
ChIP SKM-1 GSE93706.POU5F1.SKM-1 173 bp overlap
RREB1 1 dataset
Motif DE_12h DE_12h-RREB1_MA0073.2 19 bp overlap
RUNX1 1 dataset
ChIP Jurkat GSE85524.RUNX1.Jurkat 289 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 735 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 296 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 274 bp overlap
SMARCC1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 273 bp overlap
SMC3 1 dataset
ChIP neural ENCSR404BPV.SMC3.neural 352 bp overlap
SP1 1 dataset
Motif DE_12h DE_12h-SP1_MA0079.5 9 bp overlap
SP2 1 dataset
Motif DE_12h DE_12h-SP2_MA0516.3 9 bp overlap
SP3 1 dataset
Motif DE_12h DE_12h-SP3_MA0746.3 11 bp overlap
SP4 1 dataset
Motif DE_12h DE_12h-SP4_MA0685.2 9 bp overlap
SP8 1 dataset
Motif DE_12h DE_12h-SP8_MA0747.2 11 bp overlap
SP9 1 dataset
Motif DE_12h DE_12h-SP9_MA1564.2 10 bp overlap
SREBP2 1 dataset
ChIP HCC70 GSE126380.SREBP2.HCC70 359 bp overlap
SUZ12 7 datasets
ChIP H1 ENCFF881NFR 811 bp overlap
ChIP H1 ENCFF881NFR 481 bp overlap
ChIP K-562 ENCSR000AUC.SUZ12.K-562 140 bp overlap
ChIP K-562 ENCSR000AUC.SUZ12.K-562 304 bp overlap
ChIP NT2-D1 ENCSR000EXH.SUZ12.NT2-D1 483 bp overlap
ChIP NT2-D1 GSE101538.SUZ12.NT2-D1 389 bp overlap
ChIP hiPSC_WT GSE124903.SUZ12.hiPSC_WT 673 bp overlap
Six4 1 dataset
Motif DE_12h DE_12h-Six4_MA2001.2 7 bp overlap
TBX20 1 dataset
Motif DE_12h DE_12h-TBX20_MA0689.1 11 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 726 bp overlap
TFAP2E 1 dataset
Motif DE_12h DE_12h-TFAP2E_MA1569.2 9 bp overlap
TP53 1 dataset
ChIP hESC_DIFF GSE39912.TP53.hESC_DIFF 392 bp overlap
ZBTB6 1 dataset
Motif DE_12h DE_12h-ZBTB6_MA1581.2 9 bp overlap
ZBTB7B 1 dataset
Motif DE_12h DE_12h-ZBTB7B_MA0694.2 10 bp overlap
ZIM3 1 dataset
Motif DE_12h DE_12h-ZIM3_MA1709.2 11 bp overlap
ZKSCAN3 1 dataset
Motif DE_12h DE_12h-ZKSCAN3_MA1973.2 14 bp overlap
ZNF148 1 dataset
Motif DE_12h DE_12h-ZNF148_MA1653.2 10 bp overlap
ZNF16 1 dataset
Motif DE_12h DE_12h-ZNF16_MA1654.2 21 bp overlap
ZNF184 1 dataset
Motif DE_12h DE_12h-ZNF184_MA2120.1 13 bp overlap
ZNF324 1 dataset
Motif DE_12h DE_12h-ZNF324_MA1977.2 14 bp overlap
ZNF454 1 dataset
Motif DE_12h DE_12h-ZNF454_MA1712.2 17 bp overlap
ZNF530 1 dataset
Motif DE_12h DE_12h-ZNF530_MA1981.2 14 bp overlap
ZNF574 1 dataset
Motif DE_12h DE_12h-ZNF574_MA1982.2 14 bp overlap
ZNF667 1 dataset
Motif DE_12h DE_12h-ZNF667_MA1984.2 11 bp overlap
ZNF684 1 dataset
Motif DE_12h DE_12h-ZNF684_MA1600.2 14 bp overlap
ZNF90 1 dataset
ChIP HEK293T GSE78099.ZNF90.HEK293T 75 bp overlap
Zfx 1 dataset
Motif DE_12h DE_12h-Zfx_MA0146.3 10 bp overlap