chr20 : 13,200,733 – 13,201,399

666 bp 93 TFs 0 linked genes

This 666 bp open chromatin element has no linked target genes and is bound by 93 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

93 transcription factors

ARID1A 1 dataset

ChIP HAP1 GSE108387.ARID1A.HAP1 405 bp overlap

ARNTL 1 dataset

ChIP U2OS_DMSO GSE85096.ARNTL.U2OS_DMSO 239 bp overlap

ASCL1 4 datasets

ChIP NCI-H128 GSE69394.ASCL1.NCI-H128 165 bp overlap

ChIP NCI-H2107 GSE69394.ASCL1.NCI-H2107 155 bp overlap

ChIP NCI-H889 GSE69394.ASCL1.NCI-H889 197 bp overlap

ChIP SCLC_ASCLP GSE61197.ASCL1.SCLC_ASCLP 207 bp overlap

ASXL3 2 datasets

ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 618 bp overlap

ChIP NCI-H1963_Ab2 GSE145028.ASXL3.NCI-H1963_Ab2 367 bp overlap

ATF2 1 dataset

ChIP WA01 ENCSR000BQU.ATF2.WA01 203 bp overlap

BAP1 1 dataset

ChIP NCI-H1963_shNONT GSE145028.BAP1.NCI-H1963_shNONT 166 bp overlap

BCL11A 2 datasets

ChIP HEK293 ENCFF294OHB 343 bp overlap

ChIP HEK293 ENCSR021DJC.BCL11A.HEK293 310 bp overlap

BCOR 2 datasets

ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 193 bp overlap

ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 265 bp overlap

BRD4 9 datasets

ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 510 bp overlap

ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 446 bp overlap

ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 404 bp overlap

ChIP cortical-interneuron GSE117508.BRD4.cortical-interneuron 306 bp overlap

ChIP cortical-interneuron_KCl-pos GSE117508.BRD4.cortical-interneuron_KCl-pos 398 bp overlap

ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 186 bp overlap

ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 354 bp overlap

ChIP cortical-interneuron_R133C_KCl-pos_JQ1-pos GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-pos 355 bp overlap

ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 297 bp overlap

CASZ1 1 dataset

ChIP rhabdomyosarcoma_Trametinib GSE126143.CASZ1.rhabdomyosarcoma_Trametinib 326 bp overlap

CTCF 2 datasets

ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 304 bp overlap

ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 328 bp overlap

Crx 1 dataset

Motif DE_12h DE_12h-Crx_MA0467.3 6 bp overlap

Dmbx1 1 dataset

Motif DE_12h DE_12h-Dmbx1_MA0883.2 10 bp overlap

EP300 1 dataset

ChIP hESC GSE17917.EP300.hESC 172 bp overlap

ERG 1 dataset

ChIP VCaP_ETOH GSE49091.ERG.VCaP_ETOH 194 bp overlap

EWSR1-FLI1 1 dataset

Motif DE_12h DE_12h-EWSR1-FLI1_MA0149.1 18 bp overlap

EZH2 1 dataset

ChIP neural progenitor cell ENCFF018MKA 538 bp overlap

EZH2_phosphoT487 2 datasets

ChIP neural_progenitor ENCSR656MXA.EZH2_phosphoT487.neural_progenitor 537 bp overlap

ChIP neuron_bipolar_doxy_4d ENCSR886KKK.EZH2_phosphoT487.neuron_bipolar_doxy_4d 272 bp overlap

FEZF1 3 datasets

ChIP HEK293 ENCFF528YED 225 bp overlap

ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 336 bp overlap

ChIP HEK293 GSE76494.FEZF1.HEK293 247 bp overlap

FIP1L1 2 datasets

ChIP Hep-G2 GSE120104.FIP1L1.Hep-G2 200 bp overlap

ChIP Hep-G2 ENCSR313VZG.FIP1L1.Hep-G2 191 bp overlap

FOXA1 1 dataset

ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 211 bp overlap

FOXA2 3 datasets

ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 389 bp overlap

ChIP DE DE-FOXA2-1 383 bp overlap

ChIP DE DE-FOXA2-2 380 bp overlap

FOXP1 1 dataset

ChIP H9 GSE31006.FOXP1.H9 124 bp overlap

GLIS1 2 datasets

ChIP HEK293 ENCFF299RSE 230 bp overlap

ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 375 bp overlap

GSC 1 dataset

Motif DE_12h DE_12h-GSC_MA0648.2 6 bp overlap

GSC2 1 dataset

Motif DE_12h DE_12h-GSC2_MA0891.2 6 bp overlap

HAND2 1 dataset

Motif DE_12h DE_12h-HAND2_MA1638.2 6 bp overlap

HOXB8 1 dataset

ChIP CFPAC-1_HOXB8-OE GSE119930.HOXB8.CFPAC-1_HOXB8-OE 318 bp overlap

HOXC6 1 dataset

ChIP 22Rv1 GSE129951.HOXC6.22Rv1 519 bp overlap

INSM2 1 dataset

ChIP HEK293 ENCSR382GSF.INSM2.HEK293 288 bp overlap

IRF9 1 dataset

Motif DE_12h DE_12h-IRF9_MA0653.1 15 bp overlap

KDM1A 1 dataset

ChIP NCI-H526_DMSO GSE66297.KDM1A.NCI-H526_DMSO 185 bp overlap

MAX 1 dataset

ChIP NCI-H128 GSE41105.MAX.NCI-H128 332 bp overlap

MEIS1 1 dataset

Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap

MEIS3 1 dataset

Motif DE_12h DE_12h-MEIS3_MA0775.2 7 bp overlap

MYC 1 dataset

ChIP NCI-H2171 GSE41105.MYC.NCI-H2171 173 bp overlap

NANOG 6 datasets

ChIP HUES-8 GSE109524.NANOG.HUES-8 665 bp overlap

ChIP WA01 ERP004238.NANOG.WA01 309 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 666 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 538 bp overlap

ChIP hESC GSE18292.NANOG.hESC 188 bp overlap

ChIP hESC GSE18292.NANOG.hESC 95 bp overlap

NEUROD1 2 datasets

ChIP D283-Med GSE92582.NEUROD1.D283-Med 387 bp overlap

ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 380 bp overlap

NFRKB 1 dataset

ChIP HepG2 ENCFF930CVC 298 bp overlap

NKX3-1 1 dataset

ChIP islet ERP004003.NKX3-1.islet 339 bp overlap

NR1H2::RXRA 1 dataset

Motif DE_12h DE_12h-NR1H2RXRA_MA0115.1 17 bp overlap

OSR2 3 datasets

ChIP HEK293 ENCFF875BDB 284 bp overlap

ChIP HEK293 ENCSR324LTM.OSR2.HEK293 338 bp overlap

ChIP HEK293 GSE76494.OSR2.HEK293 213 bp overlap

OTX1 1 dataset

Motif DE_12h DE_12h-OTX1_MA0711.2 6 bp overlap

OTX2 1 dataset

Motif DE_12h DE_12h-OTX2_MA0712.3 7 bp overlap

OVOL3 2 datasets

ChIP HEK293 ENCFF898STB 357 bp overlap

ChIP HEK293 ENCSR768LIO.OVOL3.HEK293 233 bp overlap

PAX6 1 dataset

ChIP EndoC-betaH2 GSE87530.PAX6.EndoC-betaH2 274 bp overlap

PBX3 1 dataset

Motif DE_12h DE_12h-PBX3_MA1114.2 11 bp overlap

PCBP2 1 dataset

ChIP Hep-G2 GSE120104.PCBP2.Hep-G2 390 bp overlap

PDX1 1 dataset

ChIP islet ERP001456.PDX1.islet 308 bp overlap

PITX1 1 dataset

Motif DE_12h DE_12h-PITX1_MA0682.3 6 bp overlap

PITX2 1 dataset

Motif DE_12h DE_12h-PITX2_MA1547.2 8 bp overlap

PITX3 1 dataset

Motif DE_12h DE_12h-PITX3_MA0714.2 6 bp overlap

PKNOX1 1 dataset

Motif DE_12h DE_12h-PKNOX1_MA0782.3 10 bp overlap

POU2F3 1 dataset

ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 171 bp overlap

POU5F1 3 datasets

ChIP HUES-8 GSE109524.POU5F1.HUES-8 420 bp overlap

ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 233 bp overlap

ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 305 bp overlap

PRDM4 2 datasets

ChIP HEK293 ENCFF069PHD 385 bp overlap

ChIP HEK293 ENCSR443MVV.PRDM4.HEK293 416 bp overlap

PRDM6 2 datasets

ChIP HEK293 ENCFF283AJL 315 bp overlap

ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 405 bp overlap

PRDM9 1 dataset

Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap

Pparg::Rxra 1 dataset

Motif DE_12h DE_12h-PpargRxra_MA0065.3 13 bp overlap

Prdm14 1 dataset

Motif DE_12h DE_12h-Prdm14_MA1998.2 8 bp overlap

Prdm4 1 dataset

Motif DE_12h DE_12h-Prdm4_MA1647.3 11 bp overlap

RARA 3 datasets

ChIP hiPSC_D2 GSE132532.RARA.hiPSC_D2 298 bp overlap

ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 283 bp overlap

ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 305 bp overlap

RHOXF1 1 dataset

Motif DE_12h DE_12h-RHOXF1_MA0719.2 6 bp overlap

SIX2 2 datasets

ChIP HEK GSE73865.SIX2.HEK 73 bp overlap

ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 269 bp overlap

SOX10 1 dataset

Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap

SOX2 5 datasets

ChIP LK2_DNp63 GSE137459.SOX2.LK2_DNp63 288 bp overlap

ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 415 bp overlap

ChIP RENVM GSE49404.SOX2.RENVM 203 bp overlap

ChIP hESC GSE18292.SOX2.hESC 110 bp overlap

ChIP hiPSC GSE56567.SOX2.hiPSC 370 bp overlap

SOX21 1 dataset

ChIP neuroepithelilal-cells GSE110505.SOX21.neuroepithelilal-cells 505 bp overlap

SOX4 1 dataset

Motif DE_12h DE_12h-SOX4_MA0867.3 8 bp overlap

SP7 3 datasets

ChIP HEK293 ENCFF733RBE 484 bp overlap

ChIP HEK293 ENCFF733RBE 511 bp overlap

ChIP HEK293 ENCSR468IJT.SP7.HEK293 431 bp overlap

SPIC 1 dataset

Motif DE_12h DE_12h-SPIC_MA0687.2 13 bp overlap

SS18 1 dataset

ChIP Aska-SS GSE108025.SS18.Aska-SS 267 bp overlap

Sox11 2 datasets

Motif DE_12h DE_12h-Sox11_MA0869.3 8 bp overlap

Sox6 1 dataset

Motif DE_12h DE_12h-Sox6_MA0515.1 10 bp overlap

TBX20 1 dataset

Motif DE_12h DE_12h-TBX20_MA0689.1 11 bp overlap

TP53 1 dataset

ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 239 bp overlap

WT1 2 datasets

ChIP HEK293 ENCFF906HIR 388 bp overlap

ChIP HEK293 ENCSR966PJJ.WT1.HEK293 644 bp overlap

ZBTB44 2 datasets

ChIP HEK293 ENCFF560VPN 173 bp overlap

ChIP HEK293 ENCSR076STQ.ZBTB44.HEK293 276 bp overlap

ZBTB6 3 datasets

ChIP HEK293 ENCFF881ECZ 295 bp overlap

ChIP HEK293 GSE76494.ZBTB6.HEK293 216 bp overlap

ChIP HEK293 ENCSR619OUC.ZBTB6.HEK293 207 bp overlap

ZBTB7B 1 dataset

Motif DE_12h DE_12h-ZBTB7B_MA0694.2 10 bp overlap

ZEB2 1 dataset

ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 245 bp overlap

ZIM3 1 dataset

ChIP HEK293T GSE78099.ZIM3.HEK293T 98 bp overlap

ZKSCAN3 1 dataset

Motif DE_12h DE_12h-ZKSCAN3_MA1973.2 14 bp overlap

ZNF354C 1 dataset

Motif DE_12h DE_12h-ZNF354C_MA0130.1 6 bp overlap

ZNF366 1 dataset

ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 521 bp overlap

ZNF496 1 dataset

ChIP HEK293T GSE78099.ZNF496.HEK293T 165 bp overlap

ZNF582 1 dataset

Motif DE_12h DE_12h-ZNF582_MA1983.2 19 bp overlap

ZNF707 1 dataset

Motif DE_12h DE_12h-ZNF707_MA1715.1 15 bp overlap

ZSCAN16 2 datasets

ChIP HEK293 ENCFF533NFT 361 bp overlap

ChIP HEK293 ENCSR864VJE.ZSCAN16.HEK293 222 bp overlap

ZSCAN30 1 dataset

ChIP HEK293 ENCSR768VNZ.ZSCAN30.HEK293 267 bp overlap

ZSCAN5C 1 dataset

ChIP HEK293 ENCSR731AGO.ZSCAN5C.HEK293 295 bp overlap

Zic1::Zic2 1 dataset

Motif DE_12h DE_12h-Zic1Zic2_MA1628.2 7 bp overlap

Zic2 1 dataset

Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap

Zic3 1 dataset

Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap