chr2 : 5,125,044 – 5,125,789
745 bp 78 TFs 0 linked genes
This 745 bp open chromatin element has no linked target genes and is bound by 78 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:5,120,044 – 5,130,789
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
78 transcription factors
Source
Cell type
AR 16 datasets
ChIP LAPC-4_R1881 GSE148358.AR.LAPC-4_R1881 201 bp overlap
ChIP LNCaP_FOXA1 ERP003503.AR.LNCaP_FOXA1 143 bp overlap
ChIP LNCaP_R1881 GSE62492.AR.LNCaP_R1881 193 bp overlap
ChIP LNCaP_SHCTR_DHT GSE62492.AR.LNCaP_SHCTR_DHT 191 bp overlap
ChIP LNCaP_SHFOXP1_DHT GSE62492.AR.LNCaP_SHFOXP1_DHT 172 bp overlap
ChIP LNCaP_r1881 GSE94682.AR.LNCaP_r1881 188 bp overlap
ChIP LTAD_siControl GSE94577.AR.LTAD_siControl 124 bp overlap
ChIP VCaP_DHAT_18H GSE28950.AR.VCaP_DHAT_18H 215 bp overlap
ChIP VCaP_DHAT_2H GSE28950.AR.VCaP_DHAT_2H 214 bp overlap
ChIP VCaP_DHT24H GSE58428.AR.VCaP_DHT24H 376 bp overlap
ChIP VCaP_DHT24H_SHFOXA1 GSE58428.AR.VCaP_DHT24H_SHFOXA1 220 bp overlap
ChIP VCaP_DHT24H_SHRUNX1 GSE58428.AR.VCaP_DHT24H_SHRUNX1 391 bp overlap
ChIP VCaP_R1881 GSE32892.AR.VCaP_R1881 171 bp overlap
ChIP breast-cancer_ENOB-2854 GSE128018.AR.breast-cancer_ENOB-2854 309 bp overlap
ChIP breast_tumor_Male_18 GSE104399.AR.breast_tumor_Male_18 253 bp overlap
ChIP prostate-cancer_PDX_92 GSE130408.AR.prostate-cancer_PDX_92 64 bp overlap
ASCL1 4 datasets
Motif DE_60h DE_60h-ASCL1_MA1100.3 8 bp overlap
ChIP NCI-H128 GSE69394.ASCL1.NCI-H128 192 bp overlap
ChIP NCI-H2107 GSE69394.ASCL1.NCI-H2107 195 bp overlap
ChIP SCLC_ASCLP GSE61197.ASCL1.SCLC_ASCLP 237 bp overlap
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 371 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 494 bp overlap
ASXL3 2 datasets
ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 433 bp overlap
ChIP NCI-H1963_Ab2 GSE145028.ASXL3.NCI-H1963_Ab2 443 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 167 bp overlap
Ascl2 1 dataset
Motif DE_60h DE_60h-Ascl2_MA0816.1 10 bp overlap
BAP1 2 datasets
ChIP NCI-H1963_shASXL3 GSE145028.BAP1.NCI-H1963_shASXL3 457 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BAP1.NCI-H1963_shNONT 441 bp overlap
BHLHE22 1 dataset
Motif DE_60h DE_60h-BHLHE22_MA1635.2 6 bp overlap
BRD4 6 datasets
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 721 bp overlap
ChIP NCI-H1963_dBET6 GSE145028.BRD4.NCI-H1963_dBET6 255 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 570 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 635 bp overlap
ChIP RH4_shscr GSE140115.BRD4.RH4_shscr 183 bp overlap
ChIP hESC GSE33281.BRD4.hESC 64 bp overlap
Bhlha15 1 dataset
Motif DE_60h DE_60h-Bhlha15_MA1472.3 8 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 136 bp overlap
CHD7 3 datasets
ChIP H1 ENCFF126NLU 154 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 258 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 336 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 256 bp overlap
ESR1 5 datasets
ChIP ZR751 GSE72249.ESR1.ZR751 198 bp overlap
ChIP breast-cancer_3487 GSE126004.ESR1.breast-cancer_3487 183 bp overlap
ChIP breast_tumor_Male_18 GSE104399.ESR1.breast_tumor_Male_18 251 bp overlap
ChIP breast_tumor_Male_19 GSE104399.ESR1.breast_tumor_Male_19 272 bp overlap
ChIP breast_tumor_Male_5 GSE104399.ESR1.breast_tumor_Male_5 194 bp overlap
FEZF2 1 dataset
Motif DE_60h DE_60h-FEZF2_MA2341.1 8 bp overlap
FOXA1 41 datasets
ChIP 22Rv1 GSE85558.FOXA1.22Rv1 231 bp overlap
ChIP 22Rv1_CST GSE129951.FOXA1.22Rv1_CST 242 bp overlap
ChIP 22Rv1_CST_Crispr GSE123618.FOXA1.22Rv1_CST_Crispr 166 bp overlap
ChIP 22Rv1_CST_Crispr_WT3 GSE123618.FOXA1.22Rv1_CST_Crispr_WT3 184 bp overlap
ChIP 22Rv1_Dox GSE85558.FOXA1.22Rv1_Dox 262 bp overlap
ChIP 22Rv1_i176m_CST GSE123618.FOXA1.22Rv1_i176m_CST 196 bp overlap
ChIP LAPC-4_CST_DHT GSE123618.FOXA1.LAPC-4_CST_DHT 280 bp overlap
ChIP LNCaP_F266S_shFOXA1 GSE128883.FOXA1.LNCaP_F266S_shFOXA1 239 bp overlap
ChIP LNCaP_G87R_shFOXA1 GSE128883.FOXA1.LNCaP_G87R_shFOXA1 208 bp overlap
ChIP LNCaP_R1881 GSE69043.FOXA1.LNCaP_R1881 153 bp overlap
ChIP MCF-7 GSE81714.FOXA1.MCF-7 229 bp overlap
ChIP MCF-7 ERP001226.FOXA1.MCF-7 187 bp overlap
ChIP MCF-7_E2 GSE60270.FOXA1.MCF-7_E2 167 bp overlap
ChIP MCF-7_E2 GSE23852.FOXA1.MCF-7_E2 202 bp overlap
ChIP MCF-7_E2_TAM ERP000380.FOXA1.MCF-7_E2_TAM 126 bp overlap
ChIP MCF-7_ETOH GSE23852.FOXA1.MCF-7_ETOH 168 bp overlap
ChIP MCF-7_siFEN1 GSE95302.FOXA1.MCF-7_siFEN1 186 bp overlap
ChIP MCF-7_vehicle_ab2 GSE112969.FOXA1.MCF-7_vehicle_ab2 259 bp overlap
ChIP NCI-H3122 GSE39998.FOXA1.NCI-H3122 280 bp overlap
ChIP VCaP_DHT24H GSE58428.FOXA1.VCaP_DHT24H 320 bp overlap
ChIP VCaP_DHT24H GSE58428.FOXA1.VCaP_DHT24H 355 bp overlap
ChIP ZR-75-1_estrogen_ab1 GSE112969.FOXA1.ZR-75-1_estrogen_ab1 228 bp overlap
ChIP ZR-75-1_estrogen_ab2 GSE112969.FOXA1.ZR-75-1_estrogen_ab2 437 bp overlap
ChIP ZR-75-1_vehicle_ab1 GSE112969.FOXA1.ZR-75-1_vehicle_ab1 233 bp overlap
ChIP ZR-75-1_vehicle_ab2 GSE112969.FOXA1.ZR-75-1_vehicle_ab2 474 bp overlap
ChIP ZR751 GSE72249.FOXA1.ZR751 402 bp overlap
ChIP ZR751_DEX GSE72249.FOXA1.ZR751_DEX 433 bp overlap
ChIP ZR751_E2 GSE72249.FOXA1.ZR751_E2 460 bp overlap
ChIP ZR751_E2_TAM ERP000380.FOXA1.ZR751_E2_TAM 215 bp overlap
ChIP breast-cancer_3487 GSE126004.FOXA1.breast-cancer_3487 489 bp overlap
ChIP breast-cancer_ENOB-2849 GSE128018.FOXA1.breast-cancer_ENOB-2849 195 bp overlap
ChIP breast-cancer_ENOB-2852 GSE128018.FOXA1.breast-cancer_ENOB-2852 239 bp overlap
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 581 bp overlap
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 99 bp overlap
ChIP breast-cancer_Veh-2858 GSE128018.FOXA1.breast-cancer_Veh-2858 278 bp overlap
ChIP breast-cancer_Veh-2860 GSE128018.FOXA1.breast-cancer_Veh-2860 562 bp overlap
ChIP breast_tumor_Male_13 GSE104399.FOXA1.breast_tumor_Male_13 471 bp overlap
ChIP breast_tumor_Male_19 GSE104399.FOXA1.breast_tumor_Male_19 420 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 348 bp overlap
ChIP primary-breast-cancer_B2_DSG GSE114737.FOXA1.primary-breast-cancer_B2_DSG 207 bp overlap
ChIP primary-prostate-cancer_P2_DSG GSE114737.FOXA1.primary-prostate-cancer_P2_DSG 519 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 547 bp overlap
ChIP DE DE-FOXA2-2 613 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 571 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 218 bp overlap
GATA2 1 dataset
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 177 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 291 bp overlap
ChIP DE DE-GATA4-2 370 bp overlap
ChIP foregut GSE117136.GATA4.foregut 447 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 529 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 359 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-1 287 bp overlap
ChIP DE DE-GATA6-2 362 bp overlap
ChIP foregut GSE117136.GATA6.foregut 522 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 211 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 228 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 322 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000BNR.HDAC2.WA01 192 bp overlap
HNF1B 1 dataset
ChIP foregut GSE117136.HNF1B.foregut 253 bp overlap
KDM1A 3 datasets
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 440 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 328 bp overlap
ChIP pancreatic-progenitor_PP2-KDM1A-inh GSE104840.KDM1A.pancreatic-progenitor_PP2-KDM1A-inh 220 bp overlap
MAX 2 datasets
ChIP NCI-H128 GSE41105.MAX.NCI-H128 285 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 138 bp overlap
MSC 1 dataset
Motif DE_60h DE_60h-MSC_MA0665.1 10 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 201 bp overlap
MYC 1 dataset
ChIP P493-6_scramble-shRNA GSE101853.MYC.P493-6_scramble-shRNA 116 bp overlap
MYF5 2 datasets
Motif DE_60h DE_60h-MYF5_MA1641.2 8 bp overlap
ChIP Rh18 GSE84628.MYF5.Rh18 202 bp overlap
MYF6 1 dataset
Motif DE_60h DE_60h-MYF6_MA0667.1 10 bp overlap
MYOD1 3 datasets
Motif DE_60h DE_60h-MYOD1_MA0499.3 9 bp overlap
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 247 bp overlap
ChIP RH4 GSE83726.MYOD1.RH4 174 bp overlap
MYOG 2 datasets
Motif DE_60h DE_60h-MYOG_MA0500.3 8 bp overlap
ChIP RH4_DMSO-6H GSE116344.MYOG.RH4_DMSO-6H 257 bp overlap
NANOG 11 datasets
ChIP GM23338 ENCFF065NZG 239 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 148 bp overlap
ChIP H1 ENCFF747ZPQ 233 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 529 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 502 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 205 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 607 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 374 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 268 bp overlap
ChIP hESC GSE18292.NANOG.hESC 247 bp overlap
ChIP hESC GSE20650.NANOG.hESC 260 bp overlap
NHLH1 1 dataset
Motif DE_60h DE_60h-NHLH1_MA0048.3 9 bp overlap
NKX2-1 2 datasets
ChIP NCI-H1819 GSE39998.NKX2-1.NCI-H1819 232 bp overlap
ChIP NCI-H3122 GSE39998.NKX2-1.NCI-H3122 349 bp overlap
NKX2-2 2 datasets
Motif DE_60h DE_60h-NKX2-2_MA1645.2 8 bp overlap
Motif DE_60h DE_60h-NKX2-2_MA1645.2 8 bp overlap
NKX2-5 1 dataset
Motif DE_60h DE_60h-NKX2-5_MA0063.3 7 bp overlap
NR3C1 2 datasets
ChIP MCF-7_E2_Dex GSE81510.NR3C1.MCF-7_E2_Dex 255 bp overlap
ChIP MCF-7_ICI_Dex GSE81510.NR3C1.MCF-7_ICI_Dex 224 bp overlap
Neurod2 1 dataset
Motif DE_60h DE_60h-Neurod2_MA1993.2 6 bp overlap
Olig2 1 dataset
Motif DE_60h DE_60h-Olig2_MA1997.2 6 bp overlap
PBX3 1 dataset
Motif DE_60h DE_60h-PBX3_MA1114.2 11 bp overlap
PDX1 1 dataset
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 305 bp overlap
PKNOX1 1 dataset
Motif DE_60h DE_60h-PKNOX1_MA0782.3 10 bp overlap
POLR2A 4 datasets
ChIP H1 ENCFF566JSR 297 bp overlap
ChIP H1 ENCFF770YBQ 471 bp overlap
ChIP H1 ENCFF833NJP 411 bp overlap
ChIP H1 ENCFF833NJP 235 bp overlap
POU5F1 5 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 531 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 339 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 412 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 249 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 209 bp overlap
Ptf1A 1 dataset
Motif DE_60h DE_60h-Ptf1A_MA1619.2 8 bp overlap
RARA 1 dataset
ChIP hiPSC_D2 GSE132532.RARA.hiPSC_D2 313 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 305 bp overlap
RXR 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.RXR.pancreatic-progenitor_PP1 178 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 252 bp overlap
SIN3A 1 dataset
ChIP MCF-7 ENCSR000BUM.SIN3A.MCF-7 415 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE21614.SMAD3.BG03 199 bp overlap
SMARCA4 4 datasets
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 263 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 378 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 355 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 321 bp overlap
SMARCB1 1 dataset
ChIP hiPSC GSE124903.SMARCB1.hiPSC 192 bp overlap
SMARCC1 1 dataset
ChIP hiPSC GSE124903.SMARCC1.hiPSC 285 bp overlap
SOX10 1 dataset
Motif DE_60h DE_60h-SOX10_MA0442.3 6 bp overlap
SOX2 9 datasets
ChIP H9 GSE46837.SOX2.H9 156 bp overlap
ChIP HNSC GSE69479.SOX2.HNSC 279 bp overlap
ChIP NPC GSE122631.SOX2.NPC 132 bp overlap
ChIP hESC GSE18292.SOX2.hESC 54 bp overlap
ChIP hESC GSE18292.SOX2.hESC 97 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 355 bp overlap
ChIP hiPSC GSE67282.SOX2.hiPSC 259 bp overlap
ChIP hiPSC_KDP53 GSE67282.SOX2.hiPSC_KDP53 174 bp overlap
ChIP hiPSC_KDP53_INHI GSE67282.SOX2.hiPSC_KDP53_INHI 252 bp overlap
SOX21 1 dataset
ChIP neuroepithelilal-cells GSE110505.SOX21.neuroepithelilal-cells 346 bp overlap
SOX4 1 dataset
Motif DE_60h DE_60h-SOX4_MA0867.3 8 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 321 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 505 bp overlap
STAT3 1 dataset
ChIP HCC70_EtOH GSE85579.STAT3.HCC70_EtOH 137 bp overlap
Sox11 1 dataset
Motif DE_60h DE_60h-Sox11_MA0869.3 8 bp overlap
TAF7 2 datasets
ChIP H1 ENCFF061XZZ 337 bp overlap
ChIP WA01 ENCSR000BLU.TAF7.WA01 355 bp overlap
TAL1::TCF3 1 dataset
Motif DE_60h DE_60h-TAL1TCF3_MA0091.2 10 bp overlap
TBP 2 datasets
ChIP H1 ENCFF859IIO 377 bp overlap
ChIP WA01 ENCSR000ECB.TBP.WA01 161 bp overlap
TCF12 3 datasets
ChIP H1 ENCFF203EBH 233 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 206 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 138 bp overlap
TEAD4 2 datasets
ChIP MCF-7_BLRP_WT_E2 GSE125594.TEAD4.MCF-7_BLRP_WT_E2 182 bp overlap
ChIP MCF-7_BLRP_WT_Veh GSE125594.TEAD4.MCF-7_BLRP_WT_Veh 176 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 162 bp overlap
TFAP4 1 dataset
Motif DE_60h DE_60h-TFAP4_MA0691.1 10 bp overlap
TP53 1 dataset
ChIP hESC_DIFF GSE39912.TP53.hESC_DIFF 276 bp overlap
TRIM28 1 dataset
ChIP hESC GSE115387.TRIM28.hESC 174 bp overlap
Tcf12 1 dataset
Motif DE_60h DE_60h-Tcf12_MA0521.3 6 bp overlap
Tcf21 1 dataset
Motif DE_60h DE_60h-Tcf21_MA0832.2 10 bp overlap
Twist2 1 dataset
Motif DE_60h DE_60h-Twist2_MA0633.3 6 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 155 bp overlap
ZNF143 1 dataset
ChIP WA01 ENCSR000EBW.ZNF143.WA01 152 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 159 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 151 bp overlap
ZNF677 1 dataset
Motif DE_60h DE_60h-ZNF677_MA2101.1 12 bp overlap
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